Wall clock time and date at job start Mon Mar 30 2020 08:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 112.90569 * 2 1 4 4 C 1.53787 * 113.61323 * 228.75197 * 2 1 3 5 5 C 1.53954 * 87.10987 * 220.08710 * 4 2 1 6 6 C 1.53779 * 113.61668 * 131.25229 * 2 1 3 7 7 H 1.09003 * 113.61294 * 25.35232 * 6 2 1 8 8 C 1.50692 * 113.61610 * 254.52945 * 6 2 1 9 9 O 1.21290 * 120.00322 * 263.72454 * 8 6 2 10 10 N 1.34772 * 120.00134 * 83.71976 * 8 6 2 11 11 C 1.46503 * 120.00416 * 179.97438 * 10 8 6 12 12 H 1.08996 * 110.01285 * 326.39426 * 11 10 8 13 13 C 1.53881 * 110.02899 * 87.83598 * 11 10 8 14 14 C 1.54265 * 106.59921 * 119.28967 * 13 11 10 15 15 C 1.54892 * 104.19556 * 23.60597 * 14 13 11 16 16 H 1.08998 * 110.75326 * 80.37799 * 15 14 13 17 17 C 1.50699 * 110.91057 * 203.67011 * 15 14 13 18 18 H 1.08005 * 119.99898 * 115.95484 * 17 15 14 19 19 C 1.37876 * 120.00469 * 295.95512 * 17 15 14 20 20 N 1.31513 * 119.99916 * 359.97438 * 19 17 15 21 21 Si 1.86795 * 120.00111 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47076 * 89.99941 * 21 19 17 23 23 H 1.48502 * 109.47129 * 209.99725 * 21 19 17 24 24 H 1.48502 * 109.47373 * 329.99808 * 21 19 17 25 25 C 1.54261 * 110.03509 * 204.99733 * 11 10 8 26 26 H 1.08997 * 109.46922 * 288.74325 * 1 2 3 27 27 H 1.08997 * 109.47342 * 48.74684 * 1 2 3 28 28 H 1.08998 * 109.46663 * 168.74860 * 1 2 3 29 29 H 1.09001 * 109.47248 * 185.32013 * 3 2 1 30 30 H 1.09002 * 109.47294 * 305.31992 * 3 2 1 31 31 H 1.09002 * 109.47152 * 65.31935 * 3 2 1 32 32 H 1.08993 * 113.61449 * 334.56749 * 4 2 1 33 33 H 1.09003 * 113.61225 * 105.38625 * 4 2 1 34 34 H 1.08999 * 113.61272 * 270.84470 * 5 4 2 35 35 H 1.08994 * 113.66529 * 139.88858 * 5 4 2 36 36 H 0.97000 * 120.00315 * 0.02562 * 10 8 6 37 37 H 1.09006 * 110.02909 * 238.56924 * 13 11 10 38 38 H 1.08999 * 110.03236 * 359.97438 * 13 11 10 39 39 H 1.09003 * 110.48223 * 264.92795 * 14 13 11 40 40 H 1.08996 * 110.48345 * 142.28597 * 14 13 11 41 41 H 0.96998 * 120.00554 * 180.02562 * 20 19 17 42 42 H 1.09007 * 110.48541 * 98.42742 * 25 11 10 43 43 H 1.08996 * 110.49032 * 335.79123 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1255 1.4093 0.0000 4 6 2.1461 -0.9291 -1.0595 5 6 3.1928 -1.3159 0.0011 6 6 2.1461 -0.9291 1.0593 7 1 1.4940 -1.7528 1.3499 8 6 2.7254 -0.1961 2.2416 9 8 3.9114 0.0553 2.2777 10 7 1.9256 0.1804 3.2590 11 6 2.4889 0.8925 4.4088 12 1 3.5028 0.5433 4.6036 13 6 2.4946 2.4075 4.1392 14 6 1.6139 3.0524 5.2293 15 6 1.6401 2.0302 6.3927 16 1 2.5566 2.1303 6.9742 17 6 0.4296 2.1896 7.2760 18 1 -0.2909 1.3888 7.3544 19 6 0.2417 3.3575 7.9842 20 7 1.1192 4.3325 7.8892 21 14 -1.2585 3.5546 9.0796 22 1 -0.9405 3.0692 10.4465 23 1 -1.6423 4.9879 9.1402 24 1 -2.3853 2.7636 8.5230 25 6 1.6048 0.6698 5.6532 26 1 -0.3633 0.3302 0.9731 27 1 -0.3634 0.6776 -0.7726 28 1 -0.3632 -1.0079 -0.2005 29 1 3.2095 1.3458 -0.0953 30 1 1.7197 1.9753 -0.8385 31 1 1.8717 1.9110 0.9338 32 1 1.4946 -1.7534 -1.3491 33 1 2.5638 -0.3988 -1.9153 34 1 4.0725 -0.6723 0.0015 35 1 3.4432 -2.3767 0.0021 36 1 0.9772 -0.0208 3.2304 37 1 3.5116 2.7944 4.2036 38 1 2.0787 2.6128 3.1528 39 1 0.5958 3.1900 4.8651 40 1 2.0379 4.0045 5.5483 41 1 0.9873 5.1541 8.3877 42 1 2.0222 -0.1170 6.2817 43 1 0.5853 0.4225 5.3576 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597716597.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:28:07 Heat of formation + Delta-G solvation = -64.602038 kcal Electronic energy + Delta-G solvation = -20886.300504 eV Core-core repulsion = 17929.940043 eV Total energy + Delta-G solvation = -2956.360461 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.73663 -39.67482 -38.22457 -35.26404 -33.76722 -31.59065 -30.03313 -29.25495 -28.35134 -27.27139 -25.64235 -23.39470 -22.03307 -21.31268 -20.80690 -19.19462 -18.47787 -18.11645 -16.97438 -16.62780 -16.29515 -16.07934 -15.53619 -15.43849 -14.52199 -14.49304 -14.13713 -14.05645 -13.78363 -13.65961 -13.17460 -13.03937 -12.93975 -12.80142 -12.56715 -12.46101 -12.31770 -12.23237 -12.07721 -11.77707 -11.63498 -11.40825 -11.30495 -11.09232 -10.97342 -10.83276 -10.49101 -10.46183 -9.94791 -8.10134 -6.20602 1.43385 1.44201 1.54038 1.70721 2.32731 2.46055 3.21073 3.49164 3.57142 3.70628 3.86354 3.90955 4.02599 4.17899 4.24543 4.31695 4.58531 4.65931 4.68410 4.73254 4.77739 4.82196 4.90856 4.96673 4.98182 5.01279 5.05511 5.08393 5.14669 5.15715 5.22125 5.30132 5.33348 5.40503 5.49523 5.58169 5.65232 5.70331 5.92018 5.98351 6.37039 6.69088 6.90295 7.36986 7.47484 8.98872 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.033659 B = 0.004197 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.671126 B = 6669.488598 C = 6886.161638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.066 4.066 3 C -0.135 4.135 4 C -0.118 4.118 5 C -0.122 4.122 6 C -0.132 4.132 7 H 0.135 0.865 8 C 0.520 3.480 9 O -0.589 6.589 10 N -0.709 5.709 11 C 0.150 3.850 12 H 0.066 0.934 13 C -0.122 4.122 14 C -0.089 4.089 15 C 0.040 3.960 16 H -0.002 1.002 17 C -0.529 4.529 18 H 0.060 0.940 19 C 0.011 3.989 20 N -0.922 5.922 21 Si 0.954 3.046 22 H -0.278 1.278 23 H -0.287 1.287 24 H -0.263 1.263 25 C -0.106 4.106 26 H 0.053 0.947 27 H 0.064 0.936 28 H 0.077 0.923 29 H 0.045 0.955 30 H 0.075 0.925 31 H 0.040 0.960 32 H 0.106 0.894 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.410 0.590 37 H 0.046 0.954 38 H 0.062 0.938 39 H 0.040 0.960 40 H 0.035 0.965 41 H 0.259 0.741 42 H 0.059 0.941 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.636 -11.094 -17.761 21.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.066 4.066 3 C -0.192 4.192 4 C -0.155 4.155 5 C -0.160 4.160 6 C -0.153 4.153 7 H 0.153 0.847 8 C 0.308 3.692 9 O -0.469 6.469 10 N -0.360 5.360 11 C 0.045 3.955 12 H 0.084 0.916 13 C -0.161 4.161 14 C -0.127 4.127 15 C 0.021 3.979 16 H 0.017 0.983 17 C -0.567 4.567 18 H 0.078 0.922 19 C -0.187 4.187 20 N -0.561 5.561 21 Si 0.780 3.220 22 H -0.204 1.204 23 H -0.213 1.213 24 H -0.188 1.188 25 C -0.145 4.145 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.096 0.904 29 H 0.064 0.936 30 H 0.094 0.906 31 H 0.059 0.941 32 H 0.125 0.875 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.101 0.899 36 H 0.246 0.754 37 H 0.065 0.935 38 H 0.080 0.920 39 H 0.059 0.941 40 H 0.054 0.946 41 H 0.068 0.932 42 H 0.078 0.922 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.767 -10.745 -17.664 20.751 hybrid contribution -0.641 0.714 1.186 1.526 sum -2.407 -10.031 -16.478 19.440 Atomic orbital electron populations 1.21793 0.92184 1.03212 1.02248 1.21732 0.96356 0.93683 0.94874 1.21648 1.00258 0.95515 1.01756 1.23033 0.97368 0.99124 0.95982 1.22777 0.96699 1.02055 0.94475 1.23145 1.00827 1.00137 0.91220 0.84682 1.21117 0.86100 0.78213 0.83757 1.90644 1.17930 1.58076 1.80275 1.46209 1.12399 1.57955 1.19417 1.21433 0.97278 0.91184 0.85607 0.91624 1.22503 0.99303 0.95386 0.98861 1.22075 0.96981 0.98782 0.94900 1.19532 0.95093 0.90822 0.92449 0.98333 1.21481 1.08000 1.00786 1.26406 0.92201 1.25785 0.99085 0.95827 0.98053 1.70103 1.36985 1.06119 1.42904 0.85613 0.80127 0.77084 0.79173 1.20377 1.21299 1.18757 1.22556 0.98909 0.98545 0.94442 0.92801 0.91668 0.90428 0.93620 0.90598 0.94124 0.87529 0.90623 0.91303 0.89931 0.75362 0.93522 0.91966 0.94126 0.94618 0.93196 0.92243 0.90707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.19 71.98 0.66 -1.23 16 2 C -0.07 -1.14 1.31 -51.65 -0.07 -1.21 16 3 C -0.13 -2.96 8.09 71.98 0.58 -2.38 16 4 C -0.12 -1.65 7.22 31.18 0.23 -1.43 16 5 C -0.12 -2.34 7.08 31.18 0.22 -2.12 16 6 C -0.13 -2.66 3.66 -11.01 -0.04 -2.70 16 7 H 0.14 2.02 8.10 -2.39 -0.02 2.00 16 8 C 0.52 15.26 5.86 87.66 0.51 15.78 16 9 O -0.59 -22.41 15.55 -3.06 -0.05 -22.46 16 10 N -0.71 -20.57 4.98 -439.10 -2.19 -22.76 16 11 C 0.15 5.47 3.25 45.72 0.15 5.62 16 12 H 0.07 2.60 7.56 -2.39 -0.02 2.58 16 13 C -0.12 -4.84 6.59 31.32 0.21 -4.64 16 14 C -0.09 -4.20 5.67 31.67 0.18 -4.02 16 15 C 0.04 1.98 2.76 -10.25 -0.03 1.96 16 16 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 17 C -0.53 -28.48 8.53 25.60 0.22 -28.27 16 18 H 0.06 3.10 7.78 -2.91 -0.02 3.07 16 19 C 0.01 0.61 5.35 84.65 0.45 1.07 16 20 N -0.92 -53.89 12.22 21.45 0.26 -53.63 16 21 Si 0.95 43.05 29.54 68.60 2.03 45.08 16 22 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 23 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 24 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 25 C -0.11 -4.16 5.94 31.67 0.19 -3.97 16 26 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.08 0.78 7.94 -2.39 -0.02 0.77 16 29 H 0.04 1.15 7.32 -2.39 -0.02 1.13 16 30 H 0.08 1.38 8.14 -2.39 -0.02 1.37 16 31 H 0.04 1.06 7.46 -2.39 -0.02 1.04 16 32 H 0.11 1.03 7.96 -2.39 -0.02 1.01 16 33 H 0.08 1.02 8.10 -2.39 -0.02 1.00 16 34 H 0.07 1.70 6.89 -2.39 -0.02 1.68 16 35 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.41 9.70 8.36 -92.71 -0.77 8.92 16 37 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 38 H 0.06 2.30 7.68 -2.39 -0.02 2.28 16 39 H 0.04 1.92 8.05 -2.39 -0.02 1.91 16 40 H 0.03 1.88 7.51 -2.39 -0.02 1.86 16 41 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 42 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 43 H 0.07 2.70 7.64 -2.39 -0.02 2.68 16 Total: -1.00 -65.44 337.75 3.71 -61.72 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: 0.20 Total: 19.59 kcal Atomic # 6 Polarization: -31.00 SS G_CDS: 3.46 Total: -27.54 kcal Atomic # 7 Polarization: -74.47 SS G_CDS: -1.93 Total: -76.39 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -0.05 Total: -22.46 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -65.44 3.71 -61.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597716597.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.877 kcal (2) G-P(sol) polarization free energy of solvation -65.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds