Wall clock time and date at job start Mon Mar 30 2020 08:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 112.90804 * 2 1 4 4 C 1.53787 * 113.61584 * 228.74969 * 2 1 3 5 5 C 1.53782 * 87.08056 * 270.88381 * 4 2 1 6 6 C 1.53772 * 87.08238 * 334.56634 * 5 4 2 7 7 H 1.09006 * 113.61634 * 140.06574 * 6 5 4 8 8 C 1.50705 * 113.61808 * 270.88363 * 6 5 4 9 9 O 1.21284 * 119.99709 * 68.07263 * 8 6 5 10 10 N 1.34780 * 119.99898 * 248.07829 * 8 6 5 11 11 C 1.46919 * 120.62895 * 359.97256 * 10 8 6 12 12 C 1.53195 * 108.77239 * 126.41673 * 11 10 8 13 13 C 1.53043 * 109.31508 * 54.62979 * 12 11 10 14 14 C 1.53033 * 109.53726 * 298.63798 * 13 12 11 15 15 H 1.08999 * 109.52552 * 301.39506 * 14 13 12 16 16 C 1.50703 * 109.49620 * 181.31366 * 14 13 12 17 17 H 1.08003 * 120.00086 * 244.97344 * 16 14 13 18 18 C 1.37880 * 119.99900 * 64.97338 * 16 14 13 19 19 N 1.31515 * 119.99861 * 6.49582 * 18 16 14 20 20 Si 1.86801 * 119.99957 * 186.49067 * 18 16 14 21 21 H 1.48504 * 109.47074 * 84.98913 * 20 18 16 22 22 H 1.48506 * 109.47275 * 324.99158 * 20 18 16 23 23 H 1.48495 * 109.47032 * 204.98881 * 20 18 16 24 24 C 1.46927 * 120.62718 * 179.97438 * 10 8 6 25 25 H 1.08999 * 109.47195 * 288.74415 * 1 2 3 26 26 H 1.09002 * 109.47346 * 48.75037 * 1 2 3 27 27 H 1.09005 * 109.47045 * 168.74570 * 1 2 3 28 28 H 1.08996 * 109.47387 * 204.93509 * 3 2 1 29 29 H 1.08997 * 109.47603 * 324.93939 * 3 2 1 30 30 H 1.09002 * 109.47049 * 84.93946 * 3 2 1 31 31 H 1.09000 * 113.61559 * 156.33837 * 4 2 1 32 32 H 1.08996 * 113.69388 * 25.44365 * 4 2 1 33 33 H 1.08998 * 113.61369 * 220.01823 * 5 4 2 34 34 H 1.08997 * 113.61337 * 89.11480 * 5 4 2 35 35 H 1.08998 * 109.58595 * 246.19416 * 11 10 8 36 36 H 1.08998 * 109.59322 * 6.48744 * 11 10 8 37 37 H 1.09000 * 109.50038 * 174.58483 * 12 11 10 38 38 H 1.09000 * 109.49763 * 294.64909 * 12 11 10 39 39 H 1.09000 * 109.46239 * 178.61079 * 13 12 11 40 40 H 1.09002 * 109.45618 * 58.65614 * 13 12 11 41 41 H 0.96997 * 119.99559 * 179.97438 * 19 18 16 42 42 H 1.08999 * 109.58671 * 113.79724 * 24 10 8 43 43 H 1.09000 * 109.70592 * 353.44367 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1255 1.4093 0.0000 4 6 2.1460 -0.9291 -1.0594 5 6 2.0929 -2.0426 0.0000 6 6 2.1460 -0.9292 1.0593 7 1 1.4956 -1.1095 1.9152 8 6 3.5466 -0.5431 1.4598 9 8 4.2718 0.0173 0.6654 10 7 3.9934 -0.8207 2.7007 11 6 3.1266 -1.4987 3.6741 12 6 3.8594 -2.7318 4.2119 13 6 5.2203 -2.3087 4.7697 14 6 6.0641 -1.6955 3.6499 15 1 6.1889 -2.4229 2.8478 16 6 7.4157 -1.3087 4.1928 17 1 7.7072 -0.2692 4.2256 18 6 8.2801 -2.2818 4.6478 19 7 7.9805 -3.5527 4.4914 20 14 9.8769 -1.7948 5.4860 21 1 9.6232 -1.5466 6.9281 22 1 10.4093 -0.5592 4.8573 23 1 10.8674 -2.8913 5.3392 24 6 5.3565 -0.4511 3.1056 25 1 -0.3633 0.3302 0.9731 26 1 -0.3634 0.6776 -0.7726 27 1 -0.3633 -1.0080 -0.2006 28 1 3.1253 1.3813 -0.4332 29 1 1.4922 2.0715 -0.5903 30 1 2.1834 1.7793 1.0237 31 1 3.1591 -0.6499 -1.3490 32 1 1.4957 -1.1094 -1.9153 33 1 2.9717 -2.6875 0.0000 34 1 1.1569 -2.6009 -0.0001 35 1 2.9006 -0.8204 4.4968 36 1 2.2003 -1.8047 3.1878 37 1 3.2677 -3.1897 5.0046 38 1 4.0039 -3.4500 3.4048 39 1 5.7335 -3.1805 5.1754 40 1 5.0756 -1.5723 5.5602 41 1 8.5888 -4.2373 4.8111 42 1 5.3126 0.3129 3.8818 43 1 5.9040 -0.0666 2.2451 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597899889.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:26:52 Heat of formation + Delta-G solvation = -30.432074 kcal Electronic energy + Delta-G solvation = -21364.160927 eV Core-core repulsion = 18409.282186 eV Total energy + Delta-G solvation = -2954.878740 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.78174 -38.25422 -36.32350 -33.46412 -31.41725 -30.75427 -30.20587 -27.43165 -26.75132 -25.01352 -24.13727 -22.46918 -21.69831 -20.35260 -18.74730 -17.52219 -16.94291 -16.21446 -15.29469 -14.79873 -14.73927 -14.39931 -14.33981 -13.73082 -13.50615 -13.16948 -12.94065 -12.72339 -12.48470 -12.32389 -12.07401 -11.99173 -11.91747 -11.29642 -11.03341 -10.95924 -10.93859 -10.79679 -10.77479 -10.39616 -10.05764 -9.99880 -9.86222 -9.72451 -9.47527 -9.06026 -8.79421 -8.37137 -7.85402 -6.04051 -4.07777 3.03192 3.30249 3.36732 3.39550 3.54712 4.42932 4.46630 4.67201 4.70272 4.90879 5.10197 5.24587 5.28128 5.37958 5.49571 5.60536 5.62442 5.66737 5.70930 5.84051 5.86295 5.90553 5.99242 6.06884 6.08310 6.16366 6.31722 6.38064 6.38742 6.45741 6.49024 6.62652 6.69957 6.80240 6.99748 7.14942 7.28230 7.68254 7.90115 7.99129 8.06425 8.36954 8.73388 8.96396 9.56324 11.04487 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.034935 B = 0.004808 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.303314 B = 5821.812605 C = 6089.318043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.066 4.066 3 C -0.138 4.138 4 C -0.128 4.128 5 C -0.122 4.122 6 C -0.135 4.135 7 H 0.092 0.908 8 C 0.529 3.471 9 O -0.544 6.544 10 N -0.601 5.601 11 C 0.107 3.893 12 C -0.134 4.134 13 C -0.106 4.106 14 C 0.039 3.961 15 H 0.034 0.966 16 C -0.516 4.516 17 H 0.056 0.944 18 C 0.065 3.935 19 N -0.888 5.888 20 Si 0.891 3.109 21 H -0.280 1.280 22 H -0.274 1.274 23 H -0.287 1.287 24 C 0.118 3.882 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.081 0.919 29 H 0.045 0.955 30 H 0.047 0.953 31 H 0.094 0.906 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.060 0.940 36 H 0.074 0.926 37 H 0.056 0.944 38 H 0.059 0.941 39 H 0.079 0.921 40 H 0.037 0.963 41 H 0.260 0.740 42 H 0.052 0.948 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.523 3.296 -5.250 16.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.067 4.067 3 C -0.195 4.195 4 C -0.166 4.166 5 C -0.160 4.160 6 C -0.156 4.156 7 H 0.110 0.890 8 C 0.316 3.684 9 O -0.423 6.423 10 N -0.333 5.333 11 C -0.016 4.016 12 C -0.173 4.173 13 C -0.145 4.145 14 C 0.020 3.980 15 H 0.053 0.947 16 C -0.555 4.555 17 H 0.075 0.925 18 C -0.137 4.137 19 N -0.526 5.526 20 Si 0.718 3.282 21 H -0.206 1.206 22 H -0.199 1.199 23 H -0.213 1.213 24 C -0.003 4.003 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.100 0.900 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.112 0.888 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.104 0.896 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.098 0.902 40 H 0.056 0.944 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -15.050 3.419 -5.618 16.424 hybrid contribution 0.839 0.017 0.802 1.161 sum -14.211 3.436 -4.816 15.393 Atomic orbital electron populations 1.21615 0.93123 1.01775 1.01837 1.21612 0.94703 0.94955 0.95432 1.21867 1.02072 0.94142 1.01422 1.23120 1.02023 0.95452 0.95976 1.22704 1.02351 0.95773 0.95172 1.22677 0.95163 0.99341 0.98425 0.88971 1.19864 0.88014 0.78849 0.81639 1.90596 1.58065 1.42994 1.50615 1.48272 1.15597 1.57592 1.11847 1.21793 0.93016 0.94856 0.91922 1.21989 0.98851 0.96289 1.00140 1.21560 0.92368 1.01523 0.99004 1.18961 0.92923 0.91777 0.94309 0.94738 1.21047 0.99576 0.93284 1.41562 0.92526 1.24933 0.97934 0.94904 0.95897 1.69949 1.37299 0.99334 1.46025 0.86633 0.83292 0.78206 0.80032 1.20591 1.19899 1.21311 1.21964 0.79663 0.99276 0.99407 0.92433 0.92202 0.92433 0.90030 0.93589 0.93355 0.88753 0.91902 0.91026 0.89604 0.92121 0.90781 0.92502 0.92256 0.90226 0.94406 0.92982 0.92943 0.90245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.18 9.04 37.16 0.34 -0.85 16 2 C -0.07 -0.81 1.33 -153.69 -0.20 -1.02 16 3 C -0.14 -1.86 8.07 37.16 0.30 -1.56 16 4 C -0.13 -1.61 6.78 -25.92 -0.18 -1.79 16 5 C -0.12 -1.52 7.31 -25.92 -0.19 -1.71 16 6 C -0.13 -1.84 3.20 -90.96 -0.29 -2.13 16 7 H 0.09 1.10 5.86 -51.93 -0.30 0.80 16 8 C 0.53 9.51 6.39 -10.98 -0.07 9.44 16 9 O -0.54 -11.31 12.32 5.55 0.07 -11.24 16 10 N -0.60 -11.21 2.97 -172.79 -0.51 -11.73 16 11 C 0.11 1.67 6.29 -3.71 -0.02 1.65 16 12 C -0.13 -2.37 6.08 -26.61 -0.16 -2.53 16 13 C -0.11 -2.36 5.01 -26.69 -0.13 -2.50 16 14 C 0.04 0.97 2.12 -91.67 -0.19 0.78 16 15 H 0.03 0.97 8.12 -51.93 -0.42 0.55 16 16 C -0.52 -14.05 8.50 -34.44 -0.29 -14.34 16 17 H 0.06 1.53 7.76 -52.48 -0.41 1.12 16 18 C 0.07 1.79 5.24 -17.82 -0.09 1.70 16 19 N -0.89 -25.23 11.98 55.43 0.66 -24.57 16 20 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 C 0.12 2.57 5.65 -3.73 -0.02 2.55 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.51 8.04 -51.93 -0.42 0.09 16 27 H 0.06 0.48 7.34 -51.93 -0.38 0.10 16 28 H 0.08 1.29 5.92 -51.93 -0.31 0.98 16 29 H 0.05 0.52 7.95 -51.93 -0.41 0.11 16 30 H 0.05 0.68 8.00 -51.93 -0.42 0.27 16 31 H 0.09 1.41 6.85 -51.93 -0.36 1.05 16 32 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16 33 H 0.07 1.01 8.09 -51.93 -0.42 0.59 16 34 H 0.09 0.86 7.65 -51.93 -0.40 0.46 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 0.95 5.33 -51.93 -0.28 0.67 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.08 2.00 6.71 -51.93 -0.35 1.65 16 40 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 42 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.08 1.87 7.01 -51.93 -0.36 1.51 16 LS Contribution 325.04 15.07 4.90 4.90 Total: -1.00 -29.31 325.04 -8.44 -37.75 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -7.32 Total: 1.03 kcal Atomic # 6 Polarization: -11.08 SS G_CDS: -1.22 Total: -12.30 kcal Atomic # 7 Polarization: -36.44 SS G_CDS: 0.15 Total: -36.29 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.07 Total: -11.24 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.31 -8.44 -37.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597899889.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.316 kcal (2) G-P(sol) polarization free energy of solvation -29.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds