Wall clock time and date at job start Mon Mar 30 2020 08:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 112.90804 * 2 1 4 4 C 1.53787 * 113.61584 * 228.74969 * 2 1 3 5 5 C 1.53782 * 87.08056 * 270.88381 * 4 2 1 6 6 C 1.53772 * 87.08238 * 334.56634 * 5 4 2 7 7 H 1.09006 * 113.61634 * 140.06574 * 6 5 4 8 8 C 1.50705 * 113.61808 * 270.88363 * 6 5 4 9 9 O 1.21284 * 119.99709 * 68.07263 * 8 6 5 10 10 N 1.34780 * 119.99898 * 248.07829 * 8 6 5 11 11 C 1.46919 * 120.62895 * 359.97256 * 10 8 6 12 12 C 1.53195 * 108.77239 * 126.41673 * 11 10 8 13 13 C 1.53043 * 109.31508 * 54.62979 * 12 11 10 14 14 C 1.53033 * 109.53726 * 298.63798 * 13 12 11 15 15 H 1.08999 * 109.52552 * 301.39506 * 14 13 12 16 16 C 1.50703 * 109.49620 * 181.31366 * 14 13 12 17 17 H 1.08003 * 120.00086 * 244.97344 * 16 14 13 18 18 C 1.37880 * 119.99900 * 64.97338 * 16 14 13 19 19 N 1.31515 * 119.99861 * 6.49582 * 18 16 14 20 20 Si 1.86801 * 119.99957 * 186.49067 * 18 16 14 21 21 H 1.48504 * 109.47074 * 84.98913 * 20 18 16 22 22 H 1.48506 * 109.47275 * 324.99158 * 20 18 16 23 23 H 1.48495 * 109.47032 * 204.98881 * 20 18 16 24 24 C 1.46927 * 120.62718 * 179.97438 * 10 8 6 25 25 H 1.08999 * 109.47195 * 288.74415 * 1 2 3 26 26 H 1.09002 * 109.47346 * 48.75037 * 1 2 3 27 27 H 1.09005 * 109.47045 * 168.74570 * 1 2 3 28 28 H 1.08996 * 109.47387 * 204.93509 * 3 2 1 29 29 H 1.08997 * 109.47603 * 324.93939 * 3 2 1 30 30 H 1.09002 * 109.47049 * 84.93946 * 3 2 1 31 31 H 1.09000 * 113.61559 * 156.33837 * 4 2 1 32 32 H 1.08996 * 113.69388 * 25.44365 * 4 2 1 33 33 H 1.08998 * 113.61369 * 220.01823 * 5 4 2 34 34 H 1.08997 * 113.61337 * 89.11480 * 5 4 2 35 35 H 1.08998 * 109.58595 * 246.19416 * 11 10 8 36 36 H 1.08998 * 109.59322 * 6.48744 * 11 10 8 37 37 H 1.09000 * 109.50038 * 174.58483 * 12 11 10 38 38 H 1.09000 * 109.49763 * 294.64909 * 12 11 10 39 39 H 1.09000 * 109.46239 * 178.61079 * 13 12 11 40 40 H 1.09002 * 109.45618 * 58.65614 * 13 12 11 41 41 H 0.96997 * 119.99559 * 179.97438 * 19 18 16 42 42 H 1.08999 * 109.58671 * 113.79724 * 24 10 8 43 43 H 1.09000 * 109.70592 * 353.44367 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1255 1.4093 0.0000 4 6 2.1460 -0.9291 -1.0594 5 6 2.0929 -2.0426 0.0000 6 6 2.1460 -0.9292 1.0593 7 1 1.4956 -1.1095 1.9152 8 6 3.5466 -0.5431 1.4598 9 8 4.2718 0.0173 0.6654 10 7 3.9934 -0.8207 2.7007 11 6 3.1266 -1.4987 3.6741 12 6 3.8594 -2.7318 4.2119 13 6 5.2203 -2.3087 4.7697 14 6 6.0641 -1.6955 3.6499 15 1 6.1889 -2.4229 2.8478 16 6 7.4157 -1.3087 4.1928 17 1 7.7072 -0.2692 4.2256 18 6 8.2801 -2.2818 4.6478 19 7 7.9805 -3.5527 4.4914 20 14 9.8769 -1.7948 5.4860 21 1 9.6232 -1.5466 6.9281 22 1 10.4093 -0.5592 4.8573 23 1 10.8674 -2.8913 5.3392 24 6 5.3565 -0.4511 3.1056 25 1 -0.3633 0.3302 0.9731 26 1 -0.3634 0.6776 -0.7726 27 1 -0.3633 -1.0080 -0.2006 28 1 3.1253 1.3813 -0.4332 29 1 1.4922 2.0715 -0.5903 30 1 2.1834 1.7793 1.0237 31 1 3.1591 -0.6499 -1.3490 32 1 1.4957 -1.1094 -1.9153 33 1 2.9717 -2.6875 0.0000 34 1 1.1569 -2.6009 -0.0001 35 1 2.9006 -0.8204 4.4968 36 1 2.2003 -1.8047 3.1878 37 1 3.2677 -3.1897 5.0046 38 1 4.0039 -3.4500 3.4048 39 1 5.7335 -3.1805 5.1754 40 1 5.0756 -1.5723 5.5602 41 1 8.5888 -4.2373 4.8111 42 1 5.3126 0.3129 3.8818 43 1 5.9040 -0.0666 2.2451 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597899889.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:26:51 Heat of formation + Delta-G solvation = -46.532137 kcal Electronic energy + Delta-G solvation = -21364.859078 eV Core-core repulsion = 18409.282186 eV Total energy + Delta-G solvation = -2955.576892 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.00239 -39.64480 -37.83818 -35.35423 -33.13930 -32.12808 -31.54974 -28.42426 -27.97920 -26.83914 -25.65062 -23.51308 -23.33015 -21.86548 -20.25153 -18.93968 -18.36009 -18.03167 -16.75380 -16.43258 -16.12580 -15.68173 -15.47959 -15.11440 -14.92219 -14.65432 -14.50968 -14.19762 -13.81758 -13.68355 -13.46134 -13.04808 -12.96320 -12.87223 -12.71741 -12.64116 -12.24990 -12.08947 -12.01185 -11.88734 -11.85548 -11.58396 -11.28281 -10.98865 -10.93226 -10.83288 -10.48015 -10.33561 -9.44129 -8.15944 -6.27374 1.39815 1.40193 1.50030 1.65530 2.12811 2.42813 3.13827 3.46141 3.54375 3.69041 3.89425 3.96115 4.19748 4.22689 4.32220 4.37372 4.49742 4.60636 4.63873 4.70218 4.75021 4.80815 4.84181 4.89115 4.90664 4.96090 5.01725 5.06395 5.09624 5.20931 5.27402 5.28892 5.34668 5.42360 5.46736 5.58849 5.59354 5.70344 5.90379 6.02010 6.30684 6.62504 6.82850 7.31023 7.40270 8.91693 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.034935 B = 0.004808 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.303314 B = 5821.812605 C = 6089.318043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.059 4.059 3 C -0.136 4.136 4 C -0.133 4.133 5 C -0.115 4.115 6 C -0.136 4.136 7 H 0.121 0.879 8 C 0.519 3.481 9 O -0.582 6.582 10 N -0.609 5.609 11 C 0.108 3.892 12 C -0.126 4.126 13 C -0.099 4.099 14 C 0.042 3.958 15 H -0.013 1.013 16 C -0.540 4.540 17 H 0.052 0.948 18 C 0.018 3.982 19 N -0.916 5.916 20 Si 0.954 3.046 21 H -0.269 1.269 22 H -0.272 1.272 23 H -0.284 1.284 24 C 0.132 3.868 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.047 0.953 29 H 0.067 0.933 30 H 0.037 0.963 31 H 0.057 0.943 32 H 0.088 0.912 33 H 0.046 0.954 34 H 0.125 0.875 35 H 0.081 0.919 36 H 0.115 0.885 37 H 0.092 0.908 38 H 0.043 0.957 39 H 0.045 0.955 40 H 0.043 0.957 41 H 0.262 0.738 42 H 0.059 0.941 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.645 3.367 -4.621 19.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.060 4.060 3 C -0.194 4.194 4 C -0.170 4.170 5 C -0.153 4.153 6 C -0.157 4.157 7 H 0.139 0.861 8 C 0.308 3.692 9 O -0.463 6.463 10 N -0.340 5.340 11 C -0.014 4.014 12 C -0.165 4.165 13 C -0.138 4.138 14 C 0.022 3.978 15 H 0.005 0.995 16 C -0.578 4.578 17 H 0.070 0.930 18 C -0.181 4.181 19 N -0.555 5.555 20 Si 0.780 3.220 21 H -0.194 1.194 22 H -0.197 1.197 23 H -0.210 1.210 24 C 0.009 3.991 25 H 0.086 0.914 26 H 0.088 0.912 27 H 0.094 0.906 28 H 0.066 0.934 29 H 0.086 0.914 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.106 0.894 33 H 0.064 0.936 34 H 0.143 0.857 35 H 0.099 0.901 36 H 0.132 0.868 37 H 0.110 0.890 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -18.198 3.487 -4.983 19.188 hybrid contribution 1.869 0.011 0.543 1.947 sum -16.329 3.498 -4.440 17.279 Atomic orbital electron populations 1.21613 0.89875 1.03328 1.02938 1.21699 0.96855 0.93329 0.94099 1.21810 1.00840 0.95938 1.00777 1.23067 1.00692 0.95945 0.97310 1.22790 1.03162 0.95135 0.94170 1.22721 0.92222 1.00591 1.00124 0.86094 1.20804 0.89755 0.77843 0.80757 1.90591 1.59640 1.44506 1.51551 1.48372 1.14525 1.58076 1.13045 1.22038 0.93329 0.93863 0.92168 1.21900 0.96758 0.97217 1.00578 1.21363 0.94423 0.99944 0.98041 1.18850 0.93264 0.91913 0.93735 0.99463 1.21424 1.01251 0.93214 1.41944 0.93000 1.25697 1.01214 0.94820 0.96382 1.70075 1.38462 1.00208 1.46716 0.85631 0.79273 0.77811 0.79330 1.19402 1.19677 1.20963 1.21487 0.81624 0.97875 0.98118 0.91387 0.91166 0.90628 0.93433 0.91449 0.94381 0.92413 0.89383 0.93554 0.85668 0.90082 0.86756 0.88961 0.93829 0.93604 0.93848 0.92930 0.92285 0.93213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.67 9.04 71.98 0.65 -1.02 16 2 C -0.06 -1.29 1.33 -51.65 -0.07 -1.36 16 3 C -0.14 -3.57 8.07 71.98 0.58 -2.99 16 4 C -0.13 -3.14 6.78 31.12 0.21 -2.93 16 5 C -0.11 -2.58 7.31 31.12 0.23 -2.35 16 6 C -0.14 -3.36 3.20 -11.01 -0.04 -3.40 16 7 H 0.12 2.29 5.86 -2.38 -0.01 2.27 16 8 C 0.52 18.70 6.39 87.66 0.56 19.26 16 9 O -0.58 -25.48 12.32 -3.04 -0.04 -25.51 16 10 N -0.61 -22.58 2.97 -818.98 -2.43 -25.02 16 11 C 0.11 3.05 6.29 86.36 0.54 3.59 16 12 C -0.13 -4.27 6.08 30.67 0.19 -4.08 16 13 C -0.10 -4.48 5.01 30.62 0.15 -4.32 16 14 C 0.04 2.15 2.12 -11.48 -0.02 2.13 16 15 H -0.01 -0.77 8.12 -2.39 -0.02 -0.79 16 16 C -0.54 -30.54 8.50 25.60 0.22 -30.33 16 17 H 0.05 2.90 7.76 -2.91 -0.02 2.88 16 18 C 0.02 1.02 5.24 84.66 0.44 1.47 16 19 N -0.92 -53.77 11.98 21.45 0.26 -53.51 16 20 Si 0.95 44.21 29.54 68.60 2.03 46.24 16 21 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 22 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 23 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 24 C 0.13 5.97 5.65 86.35 0.49 6.46 16 25 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.07 0.87 8.04 -2.39 -0.02 0.85 16 27 H 0.07 0.82 7.34 -2.38 -0.02 0.80 16 28 H 0.05 1.57 5.92 -2.39 -0.01 1.55 16 29 H 0.07 1.42 7.95 -2.39 -0.02 1.40 16 30 H 0.04 1.05 8.00 -2.39 -0.02 1.03 16 31 H 0.06 1.79 6.85 -2.39 -0.02 1.78 16 32 H 0.09 1.61 8.10 -2.39 -0.02 1.59 16 33 H 0.05 1.28 8.09 -2.39 -0.02 1.26 16 34 H 0.13 1.87 7.65 -2.39 -0.02 1.85 16 35 H 0.08 2.03 8.14 -2.39 -0.02 2.02 16 36 H 0.11 2.36 5.33 -2.39 -0.01 2.35 16 37 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 38 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.05 2.36 6.71 -2.39 -0.02 2.34 16 40 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 42 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 43 H 0.05 2.51 7.01 -2.39 -0.02 2.49 16 Total: -1.00 -68.99 325.04 4.92 -64.07 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 0.97 Total: 13.60 kcal Atomic # 6 Polarization: -24.01 SS G_CDS: 4.13 Total: -19.87 kcal Atomic # 7 Polarization: -76.35 SS G_CDS: -2.18 Total: -78.53 kcal Atomic # 8 Polarization: -25.48 SS G_CDS: -0.04 Total: -25.51 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -68.99 4.92 -64.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597899889.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.538 kcal (2) G-P(sol) polarization free energy of solvation -68.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds