Wall clock time and date at job start Mon Mar 30 2020 08:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 112.90710 * 2 1 4 4 C 1.53780 * 113.61448 * 228.74622 * 2 1 3 5 5 C 1.53781 * 87.08282 * 270.88595 * 4 2 1 6 6 C 1.53784 * 113.60980 * 131.24827 * 2 1 3 7 7 H 1.09006 * 113.68457 * 203.67472 * 6 2 1 8 8 C 1.50692 * 113.61719 * 334.56822 * 6 2 1 9 9 O 1.21277 * 120.00368 * 341.89753 * 8 6 2 10 10 N 1.34777 * 119.99943 * 161.90393 * 8 6 2 11 11 C 1.46938 * 120.60614 * 0.02562 * 10 8 6 12 12 C 1.53188 * 108.77320 * 233.53999 * 11 10 8 13 13 C 1.53042 * 109.33700 * 305.41199 * 12 11 10 14 14 C 1.53038 * 109.53730 * 61.35302 * 13 12 11 15 15 H 1.08999 * 109.49969 * 58.58541 * 14 13 12 16 16 C 1.50702 * 109.49801 * 178.65166 * 14 13 12 17 17 H 1.07998 * 120.00550 * 119.99942 * 16 14 13 18 18 C 1.37885 * 119.99723 * 299.99921 * 16 14 13 19 19 N 1.31514 * 119.99835 * 359.97438 * 18 16 14 20 20 Si 1.86801 * 119.99962 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.46938 * 359.97438 * 20 18 16 22 22 H 1.48491 * 109.47193 * 119.99617 * 20 18 16 23 23 H 1.48494 * 109.46905 * 239.99833 * 20 18 16 24 24 C 1.46931 * 120.63181 * 180.02562 * 10 8 6 25 25 H 1.09001 * 109.47329 * 300.34358 * 1 2 3 26 26 H 1.08999 * 109.47005 * 60.34512 * 1 2 3 27 27 H 1.09001 * 109.47565 * 180.34106 * 1 2 3 28 28 H 1.09005 * 109.46926 * 191.25109 * 3 2 1 29 29 H 1.08996 * 109.46872 * 311.24651 * 3 2 1 30 30 H 1.08996 * 109.47230 * 71.25013 * 3 2 1 31 31 H 1.08996 * 113.61413 * 156.33543 * 4 2 1 32 32 H 1.08997 * 113.68707 * 25.44359 * 4 2 1 33 33 H 1.09002 * 113.61757 * 220.02340 * 5 4 2 34 34 H 1.09002 * 113.69128 * 89.12606 * 5 4 2 35 35 H 1.08998 * 109.55563 * 113.76302 * 11 10 8 36 36 H 1.09000 * 109.61062 * 353.34375 * 11 10 8 37 37 H 1.09002 * 109.49554 * 185.44786 * 12 11 10 38 38 H 1.09000 * 109.50163 * 65.37881 * 12 11 10 39 39 H 1.09006 * 109.45870 * 181.37214 * 13 12 11 40 40 H 1.09000 * 109.46192 * 301.33034 * 13 12 11 41 41 H 0.96998 * 120.00016 * 180.02562 * 19 18 16 42 42 H 1.09001 * 109.58257 * 6.64296 * 24 10 8 43 43 H 1.08999 * 109.58569 * 246.22099 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1255 1.4093 0.0000 4 6 2.1460 -0.9291 -1.0593 5 6 2.0929 -2.0426 0.0000 6 6 2.1459 -0.9291 1.0595 7 1 3.1590 -0.6508 1.3501 8 6 1.2452 -1.1772 2.2418 9 8 0.3138 -0.4322 2.4616 10 7 1.4747 -2.2272 3.0551 11 6 2.5996 -3.1379 2.8017 12 6 2.0682 -4.5735 2.7437 13 6 1.2888 -4.8776 4.0252 14 6 0.0961 -3.9252 4.1370 15 1 -0.5445 -4.0403 3.2627 16 6 -0.6896 -4.2471 5.3821 17 1 -0.8163 -3.4978 6.1495 18 6 -1.2467 -5.4983 5.5415 19 7 -1.0928 -6.4105 4.6068 20 14 -2.2212 -5.8970 7.0844 21 1 -2.2474 -4.7084 7.9744 22 1 -3.6100 -6.2670 6.7110 23 1 -1.5804 -7.0327 7.7948 24 6 0.6049 -2.4825 4.2115 25 1 -0.3634 0.5192 0.8869 26 1 -0.3633 0.5085 -0.8931 27 1 -0.3634 -1.0276 0.0061 28 1 3.1954 1.3517 -0.2005 29 1 1.6429 2.0077 -0.7727 30 1 1.9627 1.8726 0.9731 31 1 3.1590 -0.6499 -1.3489 32 1 1.4956 -1.1094 -1.9151 33 1 2.9717 -2.6875 0.0002 34 1 1.1574 -2.6019 0.0010 35 1 3.3286 -3.0502 3.6073 36 1 3.0695 -2.8834 1.8517 37 1 2.9040 -5.2673 2.6529 38 1 1.4092 -4.6830 1.8825 39 1 0.9305 -5.9066 3.9968 40 1 1.9419 -4.7444 4.8877 41 1 -1.4851 -7.2906 4.7187 42 1 -0.2409 -1.7953 4.1912 43 1 1.1707 -2.3418 5.1324 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597899890.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:26:56 Heat of formation + Delta-G solvation = -30.506631 kcal Electronic energy + Delta-G solvation = -21488.157309 eV Core-core repulsion = 18533.275335 eV Total energy + Delta-G solvation = -2954.881973 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.70156 -38.20637 -36.46821 -33.50782 -31.40794 -30.73410 -30.00501 -27.25373 -26.93411 -25.04769 -24.06135 -22.49094 -21.65378 -20.16409 -18.67960 -17.74311 -16.91145 -16.16751 -15.32216 -15.14565 -14.68516 -14.30038 -14.00449 -13.67025 -13.40544 -13.18741 -13.12648 -12.73168 -12.41345 -12.14113 -12.01468 -11.88717 -11.74499 -11.49085 -11.07625 -11.00073 -10.83956 -10.75463 -10.66425 -10.31509 -10.20579 -10.03349 -9.94363 -9.71596 -9.39410 -8.97123 -8.74139 -8.38141 -7.81748 -6.01703 -4.08616 3.14271 3.28735 3.36938 3.41142 3.62663 4.42614 4.45464 4.58138 4.70545 4.78100 5.15447 5.27913 5.30719 5.41864 5.50784 5.59690 5.65408 5.71267 5.76624 5.84167 5.85116 5.92174 6.03979 6.07392 6.12557 6.22631 6.33073 6.35646 6.43412 6.49899 6.51383 6.67999 6.75961 6.85075 7.04207 7.20696 7.35764 7.69919 7.93713 8.08207 8.10880 8.38966 8.76954 8.95703 9.56314 11.03785 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.032782 B = 0.005034 C = 0.004754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.917613 B = 5561.356930 C = 5888.107565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.059 4.059 3 C -0.134 4.134 4 C -0.136 4.136 5 C -0.126 4.126 6 C -0.128 4.128 7 H 0.108 0.892 8 C 0.518 3.482 9 O -0.547 6.547 10 N -0.602 5.602 11 C 0.106 3.894 12 C -0.134 4.134 13 C -0.112 4.112 14 C 0.040 3.960 15 H 0.028 0.972 16 C -0.513 4.513 17 H 0.057 0.943 18 C 0.063 3.937 19 N -0.889 5.889 20 Si 0.892 3.108 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.117 3.883 25 H 0.089 0.911 26 H 0.044 0.956 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.058 0.942 36 H 0.075 0.925 37 H 0.055 0.945 38 H 0.057 0.943 39 H 0.095 0.905 40 H 0.034 0.966 41 H 0.259 0.741 42 H 0.077 0.923 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.669 8.240 -9.893 16.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.060 4.060 3 C -0.191 4.191 4 C -0.173 4.173 5 C -0.164 4.164 6 C -0.150 4.150 7 H 0.126 0.874 8 C 0.306 3.694 9 O -0.426 6.426 10 N -0.334 5.334 11 C -0.017 4.017 12 C -0.172 4.172 13 C -0.150 4.150 14 C 0.021 3.979 15 H 0.046 0.954 16 C -0.551 4.551 17 H 0.075 0.925 18 C -0.138 4.138 19 N -0.528 5.528 20 Si 0.720 3.280 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.211 1.211 24 C -0.004 4.004 25 H 0.108 0.892 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.105 0.895 35 H 0.077 0.923 36 H 0.094 0.906 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.113 0.887 40 H 0.053 0.947 41 H 0.069 0.931 42 H 0.096 0.904 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.124 8.446 -9.793 15.827 hybrid contribution -0.365 -0.539 0.895 1.107 sum 8.759 7.907 -8.898 14.779 Atomic orbital electron populations 1.21769 0.92265 1.02321 1.02369 1.21635 0.96532 0.93790 0.94007 1.21712 0.99716 0.95679 1.02007 1.23054 1.00926 0.96457 0.96863 1.22903 1.02944 0.95791 0.94733 1.22858 0.99842 0.99143 0.93120 0.87370 1.20386 0.85241 0.80608 0.83186 1.90579 1.31883 1.47150 1.72938 1.48319 1.30155 1.26497 1.28396 1.21822 0.88411 0.90886 1.00615 1.21988 0.99743 0.94030 1.01439 1.21624 0.96202 1.04599 0.92596 1.18957 0.93239 0.88010 0.97663 0.95378 1.21130 1.32334 0.97848 1.03824 0.92477 1.24936 0.96108 0.96335 0.96434 1.69883 1.45008 1.04691 1.33238 0.86534 0.79844 0.78316 0.83312 1.19730 1.21029 1.21053 1.21955 0.92947 1.00413 0.85102 0.89219 0.93716 0.93057 0.92915 0.92628 0.92276 0.90120 0.91206 0.90717 0.89483 0.92321 0.90637 0.92638 0.92436 0.88704 0.94678 0.93063 0.90416 0.92941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.87 7.62 37.16 0.28 -1.59 16 2 C -0.06 -0.74 1.22 -153.69 -0.19 -0.92 16 3 C -0.13 -1.45 9.20 37.16 0.34 -1.11 16 4 C -0.14 -1.41 7.22 -25.92 -0.19 -1.60 16 5 C -0.13 -1.50 5.90 -25.92 -0.15 -1.65 16 6 C -0.13 -1.72 2.51 -90.96 -0.23 -1.95 16 7 H 0.11 1.27 8.10 -51.93 -0.42 0.85 16 8 C 0.52 9.30 6.78 -10.99 -0.07 9.22 16 9 O -0.55 -11.46 12.86 5.56 0.07 -11.39 16 10 N -0.60 -11.19 2.97 -172.78 -0.51 -11.70 16 11 C 0.11 1.65 6.08 -3.71 -0.02 1.63 16 12 C -0.13 -2.37 6.08 -26.61 -0.16 -2.53 16 13 C -0.11 -2.52 4.96 -26.69 -0.13 -2.65 16 14 C 0.04 1.00 2.25 -91.67 -0.21 0.79 16 15 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 16 C -0.51 -13.96 8.57 -34.44 -0.29 -14.26 16 17 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 18 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 19 N -0.89 -25.02 11.31 55.43 0.63 -24.39 16 20 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 21 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 C 0.12 2.56 5.66 -3.72 -0.02 2.54 16 25 H 0.09 1.51 6.04 -51.93 -0.31 1.20 16 26 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.80 7.22 -51.93 -0.37 0.43 16 28 H 0.05 0.48 7.94 -51.93 -0.41 0.07 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 0.71 7.96 -51.93 -0.41 0.29 16 32 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 33 H 0.07 0.76 7.14 -51.93 -0.37 0.39 16 34 H 0.09 1.20 7.55 -51.93 -0.39 0.81 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.08 0.96 4.41 -51.93 -0.23 0.73 16 37 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.09 2.42 6.04 -51.93 -0.31 2.11 16 40 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 42 H 0.08 1.83 7.01 -51.93 -0.36 1.47 16 43 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 324.19 15.07 4.89 4.89 Total: -1.00 -29.22 324.19 -8.46 -37.68 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -7.37 Total: 1.21 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: -1.14 Total: -12.45 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: 0.11 Total: -36.10 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.07 Total: -11.39 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.22 -8.46 -37.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597899890.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.176 kcal (2) G-P(sol) polarization free energy of solvation -29.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds