Wall clock time and date at job start Mon Mar 30 2020 08:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 112.90710 * 2 1 4 4 C 1.53780 * 113.61448 * 228.74622 * 2 1 3 5 5 C 1.53781 * 87.08282 * 270.88595 * 4 2 1 6 6 C 1.53784 * 113.60980 * 131.24827 * 2 1 3 7 7 H 1.09006 * 113.68457 * 203.67472 * 6 2 1 8 8 C 1.50692 * 113.61719 * 334.56822 * 6 2 1 9 9 O 1.21277 * 120.00368 * 341.89753 * 8 6 2 10 10 N 1.34777 * 119.99943 * 161.90393 * 8 6 2 11 11 C 1.46938 * 120.60614 * 0.02562 * 10 8 6 12 12 C 1.53188 * 108.77320 * 233.53999 * 11 10 8 13 13 C 1.53042 * 109.33700 * 305.41199 * 12 11 10 14 14 C 1.53038 * 109.53730 * 61.35302 * 13 12 11 15 15 H 1.08999 * 109.49969 * 58.58541 * 14 13 12 16 16 C 1.50702 * 109.49801 * 178.65166 * 14 13 12 17 17 H 1.07998 * 120.00550 * 119.99942 * 16 14 13 18 18 C 1.37885 * 119.99723 * 299.99921 * 16 14 13 19 19 N 1.31514 * 119.99835 * 359.97438 * 18 16 14 20 20 Si 1.86801 * 119.99962 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.46938 * 359.97438 * 20 18 16 22 22 H 1.48491 * 109.47193 * 119.99617 * 20 18 16 23 23 H 1.48494 * 109.46905 * 239.99833 * 20 18 16 24 24 C 1.46931 * 120.63181 * 180.02562 * 10 8 6 25 25 H 1.09001 * 109.47329 * 300.34358 * 1 2 3 26 26 H 1.08999 * 109.47005 * 60.34512 * 1 2 3 27 27 H 1.09001 * 109.47565 * 180.34106 * 1 2 3 28 28 H 1.09005 * 109.46926 * 191.25109 * 3 2 1 29 29 H 1.08996 * 109.46872 * 311.24651 * 3 2 1 30 30 H 1.08996 * 109.47230 * 71.25013 * 3 2 1 31 31 H 1.08996 * 113.61413 * 156.33543 * 4 2 1 32 32 H 1.08997 * 113.68707 * 25.44359 * 4 2 1 33 33 H 1.09002 * 113.61757 * 220.02340 * 5 4 2 34 34 H 1.09002 * 113.69128 * 89.12606 * 5 4 2 35 35 H 1.08998 * 109.55563 * 113.76302 * 11 10 8 36 36 H 1.09000 * 109.61062 * 353.34375 * 11 10 8 37 37 H 1.09002 * 109.49554 * 185.44786 * 12 11 10 38 38 H 1.09000 * 109.50163 * 65.37881 * 12 11 10 39 39 H 1.09006 * 109.45870 * 181.37214 * 13 12 11 40 40 H 1.09000 * 109.46192 * 301.33034 * 13 12 11 41 41 H 0.96998 * 120.00016 * 180.02562 * 19 18 16 42 42 H 1.09001 * 109.58257 * 6.64296 * 24 10 8 43 43 H 1.08999 * 109.58569 * 246.22099 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1255 1.4093 0.0000 4 6 2.1460 -0.9291 -1.0593 5 6 2.0929 -2.0426 0.0000 6 6 2.1459 -0.9291 1.0595 7 1 3.1590 -0.6508 1.3501 8 6 1.2452 -1.1772 2.2418 9 8 0.3138 -0.4322 2.4616 10 7 1.4747 -2.2272 3.0551 11 6 2.5996 -3.1379 2.8017 12 6 2.0682 -4.5735 2.7437 13 6 1.2888 -4.8776 4.0252 14 6 0.0961 -3.9252 4.1370 15 1 -0.5445 -4.0403 3.2627 16 6 -0.6896 -4.2471 5.3821 17 1 -0.8163 -3.4978 6.1495 18 6 -1.2467 -5.4983 5.5415 19 7 -1.0928 -6.4105 4.6068 20 14 -2.2212 -5.8970 7.0844 21 1 -2.2474 -4.7084 7.9744 22 1 -3.6100 -6.2670 6.7110 23 1 -1.5804 -7.0327 7.7948 24 6 0.6049 -2.4825 4.2115 25 1 -0.3634 0.5192 0.8869 26 1 -0.3633 0.5085 -0.8931 27 1 -0.3634 -1.0276 0.0061 28 1 3.1954 1.3517 -0.2005 29 1 1.6429 2.0077 -0.7727 30 1 1.9627 1.8726 0.9731 31 1 3.1590 -0.6499 -1.3489 32 1 1.4956 -1.1094 -1.9151 33 1 2.9717 -2.6875 0.0002 34 1 1.1574 -2.6019 0.0010 35 1 3.3286 -3.0502 3.6073 36 1 3.0695 -2.8834 1.8517 37 1 2.9040 -5.2673 2.6529 38 1 1.4092 -4.6830 1.8825 39 1 0.9305 -5.9066 3.9968 40 1 1.9419 -4.7444 4.8877 41 1 -1.4851 -7.2906 4.7187 42 1 -0.2409 -1.7953 4.1912 43 1 1.1707 -2.3418 5.1324 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597899890.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:26:56 Heat of formation + Delta-G solvation = -46.506478 kcal Electronic energy + Delta-G solvation = -21488.851114 eV Core-core repulsion = 18533.275335 eV Total energy + Delta-G solvation = -2955.575779 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.90852 -39.56503 -38.01200 -35.38586 -33.10898 -32.17294 -31.33436 -28.29758 -28.19362 -26.90001 -25.56681 -23.49072 -23.26324 -21.74328 -20.12082 -18.96024 -18.54843 -17.90301 -16.80652 -16.56782 -16.26408 -15.61896 -15.24641 -15.06148 -15.01150 -14.51840 -14.39559 -14.07128 -14.04057 -13.60027 -13.48328 -13.09980 -12.89698 -12.79792 -12.69735 -12.57242 -12.39149 -12.12758 -11.97295 -11.85484 -11.68577 -11.51421 -11.26383 -11.20460 -10.93037 -10.81604 -10.45431 -10.24435 -9.41446 -8.12338 -6.27758 1.38020 1.40125 1.51602 1.75338 2.19113 2.43019 3.13910 3.44626 3.61692 3.65092 3.85295 4.00692 4.17543 4.27279 4.35882 4.39908 4.54942 4.59116 4.61842 4.69775 4.79718 4.82244 4.87774 4.87925 4.95005 4.98523 5.03064 5.06219 5.13743 5.17126 5.27712 5.30842 5.35250 5.49126 5.53990 5.59645 5.62500 5.66497 5.92175 6.12928 6.33644 6.66340 6.82135 7.34649 7.40606 8.91417 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.032782 B = 0.005034 C = 0.004754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.917613 B = 5561.356930 C = 5888.107565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.068 4.068 3 C -0.130 4.130 4 C -0.116 4.116 5 C -0.127 4.127 6 C -0.126 4.126 7 H 0.140 0.860 8 C 0.508 3.492 9 O -0.587 6.587 10 N -0.608 5.608 11 C 0.108 3.892 12 C -0.126 4.126 13 C -0.105 4.105 14 C 0.043 3.957 15 H -0.017 1.017 16 C -0.538 4.538 17 H 0.050 0.950 18 C 0.018 3.982 19 N -0.913 5.913 20 Si 0.955 3.045 21 H -0.270 1.270 22 H -0.282 1.282 23 H -0.275 1.275 24 C 0.130 3.870 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.027 0.973 28 H 0.078 0.922 29 H 0.063 0.937 30 H 0.040 0.960 31 H 0.113 0.887 32 H 0.073 0.927 33 H 0.103 0.897 34 H 0.058 0.942 35 H 0.077 0.923 36 H 0.116 0.884 37 H 0.089 0.911 38 H 0.043 0.957 39 H 0.062 0.938 40 H 0.036 0.964 41 H 0.262 0.738 42 H 0.049 0.951 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.490 8.604 -11.123 18.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.068 4.068 3 C -0.187 4.187 4 C -0.153 4.153 5 C -0.164 4.164 6 C -0.147 4.147 7 H 0.158 0.842 8 C 0.298 3.702 9 O -0.468 6.468 10 N -0.340 5.340 11 C -0.014 4.014 12 C -0.164 4.164 13 C -0.144 4.144 14 C 0.024 3.976 15 H 0.001 0.999 16 C -0.577 4.577 17 H 0.068 0.932 18 C -0.182 4.182 19 N -0.552 5.552 20 Si 0.781 3.219 21 H -0.194 1.194 22 H -0.208 1.208 23 H -0.200 1.200 24 C 0.008 3.992 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.046 0.954 28 H 0.097 0.903 29 H 0.082 0.918 30 H 0.059 0.941 31 H 0.131 0.869 32 H 0.092 0.908 33 H 0.121 0.879 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.133 0.867 37 H 0.107 0.893 38 H 0.062 0.938 39 H 0.080 0.920 40 H 0.055 0.945 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 11.969 8.808 -11.038 18.511 hybrid contribution -1.332 -0.641 1.271 1.949 sum 10.637 8.166 -9.767 16.591 Atomic orbital electron populations 1.21670 0.94596 1.00462 1.01665 1.21713 0.94866 0.95389 0.94863 1.21691 1.01322 0.94324 1.01351 1.23016 1.02449 0.94058 0.95811 1.22906 1.02788 0.96086 0.94632 1.23065 1.00073 1.00583 0.90980 0.84244 1.21400 0.85360 0.79602 0.83815 1.90577 1.33797 1.48473 1.73924 1.48416 1.30443 1.27552 1.27543 1.22043 0.87427 0.88478 1.03437 1.21893 0.99970 0.96603 0.97918 1.21419 0.95699 1.01827 0.95426 1.18848 0.93515 0.90532 0.94753 0.99873 1.21476 1.33428 0.98082 1.04696 0.93164 1.25686 0.96970 0.96151 0.99346 1.70015 1.45526 1.04942 1.34753 0.85551 0.78338 0.78245 0.79804 1.19393 1.20817 1.20002 1.21481 0.92912 0.97775 0.87076 0.92451 0.91861 0.95423 0.90265 0.91751 0.94126 0.86915 0.90812 0.87909 0.92295 0.90482 0.86659 0.89267 0.93770 0.91995 0.94549 0.92916 0.93282 0.92476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.69 7.62 71.98 0.55 -3.14 16 2 C -0.07 -1.53 1.22 -51.65 -0.06 -1.60 16 3 C -0.13 -2.43 9.20 71.98 0.66 -1.76 16 4 C -0.12 -1.93 7.22 31.12 0.22 -1.71 16 5 C -0.13 -2.61 5.90 31.12 0.18 -2.42 16 6 C -0.13 -3.05 2.51 -11.01 -0.03 -3.08 16 7 H 0.14 2.57 8.10 -2.38 -0.02 2.55 16 8 C 0.51 18.23 6.78 87.65 0.59 18.82 16 9 O -0.59 -25.76 12.86 -3.02 -0.04 -25.80 16 10 N -0.61 -22.51 2.97 -818.94 -2.43 -24.95 16 11 C 0.11 3.07 6.08 86.36 0.53 3.60 16 12 C -0.13 -4.28 6.08 30.67 0.19 -4.10 16 13 C -0.11 -4.82 4.96 30.62 0.15 -4.67 16 14 C 0.04 2.21 2.25 -11.47 -0.03 2.19 16 15 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 16 C -0.54 -30.54 8.57 25.60 0.22 -30.32 16 17 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 18 C 0.02 0.98 5.30 84.66 0.45 1.43 16 19 N -0.91 -52.93 11.31 21.45 0.24 -52.69 16 20 Si 0.96 44.27 29.54 68.60 2.03 46.29 16 21 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 22 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 23 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 24 C 0.13 5.95 5.66 86.35 0.49 6.43 16 25 H 0.06 2.04 6.04 -2.39 -0.01 2.02 16 26 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.03 0.89 7.22 -2.39 -0.02 0.87 16 28 H 0.08 1.07 7.94 -2.38 -0.02 1.05 16 29 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.11 1.25 7.96 -2.39 -0.02 1.23 16 32 H 0.07 1.22 8.10 -2.39 -0.02 1.20 16 33 H 0.10 1.56 7.14 -2.39 -0.02 1.54 16 34 H 0.06 1.57 7.55 -2.39 -0.02 1.55 16 35 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.12 2.40 4.41 -2.39 -0.01 2.39 16 37 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 38 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.06 3.25 6.04 -2.38 -0.01 3.23 16 40 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 42 H 0.05 2.47 7.01 -2.39 -0.02 2.46 16 43 H 0.06 2.51 8.14 -2.39 -0.02 2.50 16 Total: -1.00 -68.61 324.19 4.88 -63.73 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: 0.97 Total: 13.73 kcal Atomic # 6 Polarization: -24.43 SS G_CDS: 4.12 Total: -20.32 kcal Atomic # 7 Polarization: -75.44 SS G_CDS: -2.19 Total: -77.63 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: -0.04 Total: -25.80 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Total: -68.61 4.88 -63.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597899890.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.221 kcal (2) G-P(sol) polarization free energy of solvation -68.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds