Wall clock time and date at job start Mon Mar 30 2020 08:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 112.84792 * 2 1 4 4 C 1.53781 * 113.61667 * 131.19558 * 2 1 3 5 5 C 1.53783 * 87.07642 * 89.11929 * 4 2 1 6 6 C 1.53776 * 87.17712 * 25.39108 * 5 4 2 7 7 H 1.09006 * 113.61019 * 89.15313 * 6 5 4 8 8 C 1.50694 * 113.61691 * 220.06115 * 6 5 4 9 9 O 1.21276 * 120.00289 * 116.29153 * 8 6 5 10 10 N 1.34783 * 119.99681 * 296.29919 * 8 6 5 11 11 C 1.46926 * 120.63236 * 359.97438 * 10 8 6 12 12 C 1.53192 * 108.77460 * 233.58834 * 11 10 8 13 13 C 1.53041 * 109.31391 * 305.36647 * 12 11 10 14 14 C 1.53042 * 109.54104 * 61.36342 * 13 12 11 15 15 H 1.09006 * 109.49568 * 58.58421 * 14 13 12 16 16 C 1.50697 * 109.50089 * 178.65017 * 14 13 12 17 17 H 1.08002 * 119.99905 * 119.99618 * 16 14 13 18 18 C 1.37878 * 119.99888 * 300.00585 * 16 14 13 19 19 N 1.31510 * 120.00339 * 359.97438 * 18 16 14 20 20 Si 1.86799 * 119.99589 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47228 * 89.99929 * 20 18 16 22 22 H 1.48494 * 109.47148 * 209.99737 * 20 18 16 23 23 H 1.48503 * 109.47610 * 329.99811 * 20 18 16 24 24 C 1.46921 * 120.62708 * 179.72079 * 10 8 6 25 25 H 1.08997 * 109.46908 * 283.35460 * 1 2 3 26 26 H 1.09003 * 109.47014 * 43.35585 * 1 2 3 27 27 H 1.08996 * 109.46751 * 163.35369 * 1 2 3 28 28 H 1.09001 * 109.47208 * 171.68914 * 3 2 1 29 29 H 1.09000 * 109.47731 * 291.69005 * 3 2 1 30 30 H 1.08998 * 109.47107 * 51.69256 * 3 2 1 31 31 H 1.08997 * 113.61224 * 334.57260 * 4 2 1 32 32 H 1.09002 * 113.61527 * 203.66876 * 4 2 1 33 33 H 1.09007 * 113.61250 * 139.98726 * 5 4 2 34 34 H 1.09002 * 113.61439 * 270.79730 * 5 4 2 35 35 H 1.09001 * 109.58327 * 353.37190 * 11 10 8 36 36 H 1.08990 * 109.58331 * 113.65953 * 11 10 8 37 37 H 1.09000 * 109.49697 * 65.31248 * 12 11 10 38 38 H 1.08994 * 109.50105 * 185.41122 * 12 11 10 39 39 H 1.08997 * 109.46255 * 181.38570 * 13 12 11 40 40 H 1.09000 * 109.45918 * 301.35616 * 13 12 11 41 41 H 0.96998 * 120.00252 * 180.02562 * 19 18 16 42 42 H 1.09002 * 109.58642 * 246.19953 * 24 10 8 43 43 H 1.08999 * 109.58951 * 6.62177 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4100 0.0000 4 6 2.1461 -0.9280 1.0602 5 6 2.0930 -2.0424 0.0018 6 6 2.1448 -0.9317 -1.0603 7 1 3.1576 -0.6531 -1.3517 8 6 1.2428 -1.1828 -2.2410 9 8 0.3187 -0.4312 -2.4689 10 7 1.4629 -2.2429 -3.0437 11 6 2.5786 -3.1622 -2.7808 12 6 3.4256 -3.2855 -4.0512 13 6 2.5289 -3.7032 -5.2189 14 6 1.4608 -2.6323 -5.4527 15 1 1.9429 -1.6774 -5.6624 16 6 0.5990 -3.0285 -6.6236 17 1 -0.4631 -3.1708 -6.4887 18 6 1.1663 -3.2096 -7.8671 19 7 2.4595 -3.0361 -8.0315 20 14 0.0980 -3.7015 -9.3184 21 1 -0.4040 -2.4811 -9.9996 22 1 0.9008 -4.5066 -10.2736 23 1 -1.0520 -4.5076 -8.8359 24 6 0.5885 -2.5044 -4.1951 25 1 -0.3633 0.2374 0.9999 26 1 -0.3633 0.7472 -0.7055 27 1 -0.3633 -0.9846 -0.2944 28 1 3.2023 1.3500 0.1485 29 1 1.9152 1.8924 -0.9549 30 1 1.6781 1.9921 0.8064 31 1 1.4945 -1.1068 1.9156 32 1 3.1591 -0.6485 1.3496 33 1 2.9718 -2.6874 0.0025 34 1 1.1575 -2.6019 0.0033 35 1 3.1917 -2.7699 -1.9695 36 1 2.1877 -4.1410 -2.5032 37 1 3.8891 -2.3245 -4.2742 38 1 4.2003 -4.0373 -3.9005 39 1 3.1334 -3.8157 -6.1189 40 1 2.0463 -4.6521 -4.9848 41 1 2.8586 -3.1631 -8.9064 42 1 0.0384 -3.4313 -4.0331 43 1 -0.1119 -1.6781 -4.3171 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597899891.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:27:00 Heat of formation + Delta-G solvation = -33.053429 kcal Electronic energy + Delta-G solvation = -21371.207481 eV Core-core repulsion = 18416.215070 eV Total energy + Delta-G solvation = -2954.992411 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.70049 -38.22793 -36.44161 -33.49725 -31.42955 -30.70331 -30.02677 -27.29584 -26.96026 -25.04637 -24.06032 -22.55688 -21.61423 -20.19482 -18.56160 -17.91504 -16.82727 -16.21615 -15.33236 -15.23364 -14.64548 -14.28768 -13.93156 -13.70262 -13.40548 -13.19256 -12.91047 -12.80457 -12.65435 -12.16213 -12.00600 -11.86346 -11.79859 -11.51450 -11.18079 -10.98519 -10.84537 -10.76055 -10.65021 -10.36710 -10.21516 -10.06956 -9.93714 -9.74421 -9.41524 -8.99345 -8.77241 -8.37539 -7.82203 -6.01213 -4.08272 3.14172 3.30346 3.36874 3.39988 3.62652 4.41696 4.43547 4.53740 4.67774 4.73025 5.14969 5.28350 5.28669 5.41272 5.48195 5.57522 5.63775 5.69130 5.73263 5.79122 5.82069 5.86203 6.01263 6.06728 6.10319 6.18572 6.26671 6.35474 6.43183 6.45366 6.51222 6.63447 6.69551 6.83939 7.02637 7.20212 7.35690 7.69921 7.93988 8.08265 8.10393 8.39210 8.76110 8.95710 9.56577 11.04254 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.034791 B = 0.004823 C = 0.004534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.607794 B = 5803.956209 C = 6173.453177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.061 4.061 3 C -0.135 4.135 4 C -0.135 4.135 5 C -0.127 4.127 6 C -0.128 4.128 7 H 0.110 0.890 8 C 0.518 3.482 9 O -0.547 6.547 10 N -0.602 5.602 11 C 0.110 3.890 12 C -0.135 4.135 13 C -0.112 4.112 14 C 0.041 3.959 15 H 0.028 0.972 16 C -0.514 4.514 17 H 0.056 0.944 18 C 0.063 3.937 19 N -0.890 5.890 20 Si 0.893 3.107 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 C 0.117 3.883 25 H 0.043 0.957 26 H 0.072 0.928 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.056 0.944 39 H 0.095 0.905 40 H 0.035 0.965 41 H 0.260 0.740 42 H 0.052 0.948 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.865 1.710 16.555 16.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.061 4.061 3 C -0.192 4.192 4 C -0.172 4.172 5 C -0.164 4.164 6 C -0.149 4.149 7 H 0.128 0.872 8 C 0.306 3.694 9 O -0.425 6.425 10 N -0.334 5.334 11 C -0.013 4.013 12 C -0.174 4.174 13 C -0.150 4.150 14 C 0.022 3.978 15 H 0.047 0.953 16 C -0.552 4.552 17 H 0.075 0.925 18 C -0.138 4.138 19 N -0.528 5.528 20 Si 0.720 3.280 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.199 1.199 24 C -0.004 4.004 25 H 0.062 0.938 26 H 0.091 0.909 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.113 0.887 40 H 0.053 0.947 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.504 2.085 16.280 16.603 hybrid contribution -0.305 -0.430 -0.991 1.123 sum 2.199 1.655 15.289 15.534 Atomic orbital electron populations 1.21559 0.92300 1.03094 1.00295 1.21685 0.96403 0.93989 0.94049 1.21723 0.99818 0.95587 1.02087 1.23050 1.01054 0.96401 0.96696 1.22889 1.02634 0.95921 0.94973 1.22908 1.00139 0.98894 0.92990 0.87167 1.20349 0.85268 0.80596 0.83224 1.90637 1.32476 1.46612 1.72805 1.48306 1.30363 1.26286 1.28478 1.21769 0.88227 0.93131 0.98200 1.22009 0.98145 1.01095 0.96117 1.21623 0.98165 0.98187 0.97028 1.19033 0.92945 0.95610 0.90246 0.95339 1.21089 0.94237 1.46834 0.93056 0.92531 1.24932 0.94964 0.95228 0.98674 1.69871 1.10070 1.49648 1.23248 0.86586 0.80417 0.78567 0.82385 1.20669 1.21258 1.19887 1.22041 0.93128 1.00194 0.85061 0.93778 0.90911 0.92810 0.92846 0.92120 0.92628 0.91247 0.90015 0.90755 0.89823 0.90933 0.92223 0.92465 0.92585 0.88698 0.94652 0.93001 0.92951 0.90415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.56 7.43 37.16 0.28 -1.28 16 2 C -0.06 -0.74 1.22 -153.60 -0.19 -0.92 16 3 C -0.13 -1.50 9.16 37.16 0.34 -1.16 16 4 C -0.13 -1.31 7.23 -25.92 -0.19 -1.50 16 5 C -0.13 -1.37 5.93 -25.92 -0.15 -1.53 16 6 C -0.13 -1.72 2.43 -90.87 -0.22 -1.94 16 7 H 0.11 1.38 8.01 -51.93 -0.42 0.97 16 8 C 0.52 9.33 6.48 -10.99 -0.07 9.26 16 9 O -0.55 -11.55 13.16 5.56 0.07 -11.48 16 10 N -0.60 -11.22 2.97 -172.53 -0.51 -11.73 16 11 C 0.11 1.72 5.83 -3.71 -0.02 1.70 16 12 C -0.14 -2.42 6.08 -26.61 -0.16 -2.59 16 13 C -0.11 -2.53 4.96 -26.69 -0.13 -2.66 16 14 C 0.04 1.01 2.26 -91.45 -0.21 0.81 16 15 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 16 C -0.51 -14.02 8.57 -34.44 -0.30 -14.32 16 17 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 18 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 19 N -0.89 -25.10 11.31 55.43 0.63 -24.47 16 20 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 23 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 24 C 0.12 2.56 5.68 -3.51 -0.02 2.54 16 25 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.07 1.13 7.16 -51.93 -0.37 0.75 16 27 H 0.05 0.80 6.50 -51.93 -0.34 0.46 16 28 H 0.05 0.52 8.01 -51.93 -0.42 0.10 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 32 H 0.08 0.69 8.01 -51.93 -0.42 0.27 16 33 H 0.07 0.69 7.35 -51.92 -0.38 0.31 16 34 H 0.08 0.98 7.68 -51.93 -0.40 0.58 16 35 H 0.07 0.92 4.90 -51.93 -0.25 0.67 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.09 2.43 6.04 -51.93 -0.31 2.11 16 40 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 42 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.08 1.83 7.00 -51.93 -0.36 1.47 16 LS Contribution 324.95 15.07 4.90 4.90 Total: -1.00 -29.44 324.95 -8.51 -37.95 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -7.44 Total: 0.59 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: -1.14 Total: -11.94 kcal Atomic # 7 Polarization: -36.32 SS G_CDS: 0.12 Total: -36.20 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.07 Total: -11.48 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.44 -8.51 -37.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597899891.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.892 kcal (2) G-P(sol) polarization free energy of solvation -29.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds