Wall clock time and date at job start Mon Mar 30 2020 08:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 112.84792 * 2 1 4 4 C 1.53781 * 113.61667 * 131.19558 * 2 1 3 5 5 C 1.53783 * 87.07642 * 89.11929 * 4 2 1 6 6 C 1.53776 * 87.17712 * 25.39108 * 5 4 2 7 7 H 1.09006 * 113.61019 * 89.15313 * 6 5 4 8 8 C 1.50694 * 113.61691 * 220.06115 * 6 5 4 9 9 O 1.21276 * 120.00289 * 116.29153 * 8 6 5 10 10 N 1.34783 * 119.99681 * 296.29919 * 8 6 5 11 11 C 1.46926 * 120.63236 * 359.97438 * 10 8 6 12 12 C 1.53192 * 108.77460 * 233.58834 * 11 10 8 13 13 C 1.53041 * 109.31391 * 305.36647 * 12 11 10 14 14 C 1.53042 * 109.54104 * 61.36342 * 13 12 11 15 15 H 1.09006 * 109.49568 * 58.58421 * 14 13 12 16 16 C 1.50697 * 109.50089 * 178.65017 * 14 13 12 17 17 H 1.08002 * 119.99905 * 119.99618 * 16 14 13 18 18 C 1.37878 * 119.99888 * 300.00585 * 16 14 13 19 19 N 1.31510 * 120.00339 * 359.97438 * 18 16 14 20 20 Si 1.86799 * 119.99589 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47228 * 89.99929 * 20 18 16 22 22 H 1.48494 * 109.47148 * 209.99737 * 20 18 16 23 23 H 1.48503 * 109.47610 * 329.99811 * 20 18 16 24 24 C 1.46921 * 120.62708 * 179.72079 * 10 8 6 25 25 H 1.08997 * 109.46908 * 283.35460 * 1 2 3 26 26 H 1.09003 * 109.47014 * 43.35585 * 1 2 3 27 27 H 1.08996 * 109.46751 * 163.35369 * 1 2 3 28 28 H 1.09001 * 109.47208 * 171.68914 * 3 2 1 29 29 H 1.09000 * 109.47731 * 291.69005 * 3 2 1 30 30 H 1.08998 * 109.47107 * 51.69256 * 3 2 1 31 31 H 1.08997 * 113.61224 * 334.57260 * 4 2 1 32 32 H 1.09002 * 113.61527 * 203.66876 * 4 2 1 33 33 H 1.09007 * 113.61250 * 139.98726 * 5 4 2 34 34 H 1.09002 * 113.61439 * 270.79730 * 5 4 2 35 35 H 1.09001 * 109.58327 * 353.37190 * 11 10 8 36 36 H 1.08990 * 109.58331 * 113.65953 * 11 10 8 37 37 H 1.09000 * 109.49697 * 65.31248 * 12 11 10 38 38 H 1.08994 * 109.50105 * 185.41122 * 12 11 10 39 39 H 1.08997 * 109.46255 * 181.38570 * 13 12 11 40 40 H 1.09000 * 109.45918 * 301.35616 * 13 12 11 41 41 H 0.96998 * 120.00252 * 180.02562 * 19 18 16 42 42 H 1.09002 * 109.58642 * 246.19953 * 24 10 8 43 43 H 1.08999 * 109.58951 * 6.62177 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4100 0.0000 4 6 2.1461 -0.9280 1.0602 5 6 2.0930 -2.0424 0.0018 6 6 2.1448 -0.9317 -1.0603 7 1 3.1576 -0.6531 -1.3517 8 6 1.2428 -1.1828 -2.2410 9 8 0.3187 -0.4312 -2.4689 10 7 1.4629 -2.2429 -3.0437 11 6 2.5786 -3.1622 -2.7808 12 6 3.4256 -3.2855 -4.0512 13 6 2.5289 -3.7032 -5.2189 14 6 1.4608 -2.6323 -5.4527 15 1 1.9429 -1.6774 -5.6624 16 6 0.5990 -3.0285 -6.6236 17 1 -0.4631 -3.1708 -6.4887 18 6 1.1663 -3.2096 -7.8671 19 7 2.4595 -3.0361 -8.0315 20 14 0.0980 -3.7015 -9.3184 21 1 -0.4040 -2.4811 -9.9996 22 1 0.9008 -4.5066 -10.2736 23 1 -1.0520 -4.5076 -8.8359 24 6 0.5885 -2.5044 -4.1951 25 1 -0.3633 0.2374 0.9999 26 1 -0.3633 0.7472 -0.7055 27 1 -0.3633 -0.9846 -0.2944 28 1 3.2023 1.3500 0.1485 29 1 1.9152 1.8924 -0.9549 30 1 1.6781 1.9921 0.8064 31 1 1.4945 -1.1068 1.9156 32 1 3.1591 -0.6485 1.3496 33 1 2.9718 -2.6874 0.0025 34 1 1.1575 -2.6019 0.0033 35 1 3.1917 -2.7699 -1.9695 36 1 2.1877 -4.1410 -2.5032 37 1 3.8891 -2.3245 -4.2742 38 1 4.2003 -4.0373 -3.9005 39 1 3.1334 -3.8157 -6.1189 40 1 2.0463 -4.6521 -4.9848 41 1 2.8586 -3.1631 -8.9064 42 1 0.0384 -3.4313 -4.0331 43 1 -0.1119 -1.6781 -4.3171 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597899891.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:27:00 Heat of formation + Delta-G solvation = -49.230382 kcal Electronic energy + Delta-G solvation = -21371.908966 eV Core-core repulsion = 18416.215070 eV Total energy + Delta-G solvation = -2955.693896 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.88412 -39.57089 -37.98551 -35.37755 -33.11506 -32.13428 -31.34808 -28.29186 -28.20625 -26.89807 -25.55387 -23.57414 -23.15614 -21.74920 -20.03807 -19.08112 -18.48053 -17.89585 -16.77085 -16.68194 -16.27525 -15.50746 -15.20075 -15.04873 -14.88276 -14.64002 -14.36359 -14.06089 -14.00387 -13.63502 -13.52387 -13.08204 -12.89811 -12.80345 -12.72536 -12.57044 -12.39936 -12.14188 -11.99218 -11.84356 -11.63187 -11.55725 -11.24572 -11.23965 -10.92100 -10.81657 -10.46735 -10.28929 -9.42409 -8.12032 -6.27571 1.39423 1.40474 1.50617 1.75112 2.19459 2.43205 3.14208 3.44595 3.62459 3.65582 3.87061 4.00208 4.17387 4.26591 4.35567 4.40993 4.54172 4.59243 4.60890 4.71616 4.79720 4.82892 4.86730 4.87421 4.95947 4.97999 5.03140 5.07811 5.12241 5.16762 5.25905 5.30450 5.33937 5.48764 5.55060 5.59433 5.61605 5.63276 5.92052 6.12614 6.33577 6.65702 6.82011 7.33384 7.40711 8.91588 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.034791 B = 0.004823 C = 0.004534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.607794 B = 5803.956209 C = 6173.453177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.070 4.070 3 C -0.133 4.133 4 C -0.115 4.115 5 C -0.120 4.120 6 C -0.132 4.132 7 H 0.127 0.873 8 C 0.509 3.491 9 O -0.588 6.588 10 N -0.608 5.608 11 C 0.112 3.888 12 C -0.128 4.128 13 C -0.105 4.105 14 C 0.042 3.958 15 H -0.016 1.016 16 C -0.539 4.539 17 H 0.050 0.950 18 C 0.018 3.982 19 N -0.913 5.913 20 Si 0.955 3.045 21 H -0.280 1.280 22 H -0.279 1.279 23 H -0.267 1.267 24 C 0.131 3.869 25 H 0.066 0.934 26 H 0.040 0.960 27 H 0.033 0.967 28 H 0.073 0.927 29 H 0.033 0.967 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.106 0.894 33 H 0.102 0.898 34 H 0.073 0.927 35 H 0.113 0.887 36 H 0.078 0.922 37 H 0.043 0.957 38 H 0.090 0.910 39 H 0.062 0.938 40 H 0.036 0.964 41 H 0.262 0.738 42 H 0.057 0.943 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.254 0.657 19.036 19.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.071 4.071 3 C -0.190 4.190 4 C -0.152 4.152 5 C -0.158 4.158 6 C -0.153 4.153 7 H 0.145 0.855 8 C 0.299 3.701 9 O -0.469 6.469 10 N -0.340 5.340 11 C -0.010 4.010 12 C -0.166 4.166 13 C -0.143 4.143 14 C 0.023 3.977 15 H 0.002 0.998 16 C -0.578 4.578 17 H 0.069 0.931 18 C -0.182 4.182 19 N -0.552 5.552 20 Si 0.781 3.219 21 H -0.206 1.206 22 H -0.204 1.204 23 H -0.192 1.192 24 C 0.008 3.992 25 H 0.085 0.915 26 H 0.059 0.941 27 H 0.052 0.948 28 H 0.092 0.908 29 H 0.052 0.948 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.124 0.876 33 H 0.120 0.880 34 H 0.091 0.909 35 H 0.131 0.869 36 H 0.097 0.903 37 H 0.061 0.939 38 H 0.108 0.892 39 H 0.080 0.920 40 H 0.055 0.945 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.910 1.022 18.784 19.214 hybrid contribution -0.777 -0.043 -1.798 1.959 sum 3.133 0.979 16.985 17.300 Atomic orbital electron populations 1.21471 0.93921 1.00873 1.00541 1.21797 0.95282 0.95018 0.94995 1.21714 1.01199 0.94931 1.01153 1.22998 1.02294 0.94035 0.95892 1.22915 1.03378 0.95840 0.93657 1.23108 0.99594 1.01336 0.91271 0.85547 1.21354 0.85359 0.79407 0.83963 1.90622 1.34522 1.47817 1.73972 1.48401 1.30764 1.27367 1.27458 1.21990 0.87285 0.93706 0.97977 1.21924 0.98274 1.01220 0.95201 1.21417 0.97680 0.97347 0.97904 1.18934 0.93605 0.94080 0.91086 0.99830 1.21446 0.94385 1.47326 0.94619 0.93134 1.25687 0.96185 0.95123 1.01164 1.70005 1.11389 1.50023 1.23825 0.85602 0.78962 0.78245 0.79125 1.20582 1.20382 1.19178 1.21562 0.92808 0.99176 0.85664 0.91541 0.94053 0.94766 0.90756 0.94769 0.91369 0.90071 0.87559 0.87994 0.90880 0.86901 0.90346 0.93859 0.89184 0.91988 0.94485 0.92901 0.92474 0.93283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.95 7.43 71.98 0.53 -2.42 16 2 C -0.07 -1.55 1.22 -51.60 -0.06 -1.62 16 3 C -0.13 -2.68 9.16 71.98 0.66 -2.02 16 4 C -0.12 -1.70 7.23 31.12 0.22 -1.48 16 5 C -0.12 -2.11 5.93 31.12 0.18 -1.93 16 6 C -0.13 -3.23 2.43 -10.96 -0.03 -3.26 16 7 H 0.13 2.72 8.01 -2.38 -0.02 2.71 16 8 C 0.51 18.35 6.48 87.65 0.57 18.92 16 9 O -0.59 -26.03 13.16 -3.02 -0.04 -26.07 16 10 N -0.61 -22.53 2.97 -818.16 -2.43 -24.96 16 11 C 0.11 3.19 5.83 86.36 0.50 3.70 16 12 C -0.13 -4.38 6.08 30.67 0.19 -4.19 16 13 C -0.11 -4.81 4.96 30.62 0.15 -4.66 16 14 C 0.04 2.19 2.26 -11.33 -0.03 2.16 16 15 H -0.02 -0.99 8.14 -2.38 -0.02 -1.01 16 16 C -0.54 -30.60 8.57 25.60 0.22 -30.38 16 17 H 0.05 2.84 7.74 -2.91 -0.02 2.82 16 18 C 0.02 0.98 5.30 84.66 0.45 1.43 16 19 N -0.91 -52.98 11.31 21.45 0.24 -52.74 16 20 Si 0.96 44.24 29.54 68.60 2.03 46.27 16 21 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 22 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 23 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 24 C 0.13 5.96 5.68 86.50 0.49 6.45 16 25 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.04 1.33 7.16 -2.39 -0.02 1.32 16 27 H 0.03 1.02 6.50 -2.39 -0.02 1.00 16 28 H 0.07 1.18 8.01 -2.39 -0.02 1.16 16 29 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.08 1.08 8.10 -2.39 -0.02 1.06 16 32 H 0.11 1.14 8.01 -2.39 -0.02 1.12 16 33 H 0.10 1.27 7.35 -2.38 -0.02 1.26 16 34 H 0.07 1.48 7.68 -2.39 -0.02 1.46 16 35 H 0.11 2.35 4.90 -2.39 -0.01 2.34 16 36 H 0.08 2.00 8.14 -2.39 -0.02 1.99 16 37 H 0.04 1.59 8.14 -2.39 -0.02 1.58 16 38 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 39 H 0.06 3.25 6.04 -2.39 -0.01 3.24 16 40 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 42 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 43 H 0.05 2.47 7.00 -2.39 -0.02 2.46 16 Total: -1.00 -68.74 324.95 4.83 -63.92 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: 0.96 Total: 12.88 kcal Atomic # 6 Polarization: -23.35 SS G_CDS: 4.06 Total: -19.29 kcal Atomic # 7 Polarization: -75.52 SS G_CDS: -2.18 Total: -77.70 kcal Atomic # 8 Polarization: -26.03 SS G_CDS: -0.04 Total: -26.07 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -68.74 4.83 -63.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597899891.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.689 kcal (2) G-P(sol) polarization free energy of solvation -68.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds