Wall clock time and date at job start Mon Mar 30 2020 08:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 112.85071 * 2 1 4 4 C 1.53782 * 113.61207 * 131.19188 * 2 1 3 5 5 C 1.53783 * 87.17440 * 139.94060 * 4 2 1 6 6 C 1.53782 * 113.61564 * 228.68728 * 2 1 3 7 7 H 1.08998 * 113.60955 * 334.65445 * 6 2 1 8 8 C 1.50700 * 113.61084 * 105.46979 * 6 2 1 9 9 O 1.21281 * 120.00201 * 4.62986 * 8 6 2 10 10 N 1.34777 * 119.99979 * 184.61821 * 8 6 2 11 11 C 1.46935 * 120.62770 * 359.72681 * 10 8 6 12 12 C 1.53626 * 108.54117 * 126.36595 * 11 10 8 13 13 C 1.53039 * 109.24319 * 54.85586 * 12 11 10 14 14 C 1.53043 * 109.53723 * 298.51172 * 13 12 11 15 15 H 1.09000 * 109.52261 * 301.39421 * 14 13 12 16 16 C 1.50703 * 109.49942 * 181.32088 * 14 13 12 17 17 H 1.08002 * 119.99374 * 245.82147 * 16 14 13 18 18 C 1.37872 * 120.00285 * 65.81437 * 16 14 13 19 19 N 1.31522 * 120.00094 * 355.21299 * 18 16 14 20 20 Si 1.86801 * 120.00134 * 175.21828 * 18 16 14 21 21 H 1.48496 * 109.47292 * 94.99896 * 20 18 16 22 22 H 1.48497 * 109.46786 * 214.99808 * 20 18 16 23 23 H 1.48496 * 109.46791 * 334.99503 * 20 18 16 24 24 C 1.46921 * 120.63413 * 180.02562 * 10 8 6 25 25 H 1.09008 * 109.47385 * 308.31078 * 1 2 3 26 26 H 1.09001 * 109.47205 * 68.30944 * 1 2 3 27 27 H 1.09000 * 109.47221 * 188.31089 * 1 2 3 28 28 H 1.09005 * 109.46742 * 186.85679 * 3 2 1 29 29 H 1.08996 * 109.46690 * 306.85497 * 3 2 1 30 30 H 1.08996 * 109.46919 * 66.85659 * 3 2 1 31 31 H 1.09000 * 113.61768 * 254.53045 * 4 2 1 32 32 H 1.08998 * 113.61925 * 25.35077 * 4 2 1 33 33 H 1.08998 * 113.61511 * 89.15845 * 5 4 2 34 34 H 1.08998 * 113.61369 * 220.06525 * 5 4 2 35 35 H 1.08998 * 109.58254 * 246.19764 * 11 10 8 36 36 H 1.08997 * 109.58582 * 6.62475 * 11 10 8 37 37 H 1.09002 * 109.63443 * 294.86526 * 12 11 10 38 38 H 1.09003 * 109.45635 * 174.73941 * 12 11 10 39 39 H 1.08996 * 109.45823 * 178.49164 * 13 12 11 40 40 H 1.08997 * 109.46111 * 58.52822 * 13 12 11 41 41 H 0.96992 * 119.99958 * 179.97438 * 19 18 16 42 42 H 1.09004 * 109.58312 * 353.37968 * 24 10 8 43 43 H 1.09003 * 109.58328 * 113.65712 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4100 0.0000 4 6 2.1459 -0.9280 1.0603 5 6 3.1927 -1.3160 0.0027 6 6 2.1460 -0.9302 -1.0583 7 1 1.4939 -1.7541 -1.3481 8 6 2.7253 -0.1983 -2.2415 9 8 2.7514 1.0142 -2.2511 10 7 3.2145 -0.8911 -3.2889 11 6 3.1954 -2.3604 -3.2892 12 6 2.5009 -2.8397 -4.5730 13 6 3.1994 -2.2203 -5.7856 14 6 3.0865 -0.6956 -5.7178 15 1 2.0351 -0.4089 -5.6942 16 6 3.7463 -0.0879 -6.9288 17 1 4.6342 0.5161 -6.8139 18 6 3.2166 -0.3032 -8.1834 19 7 2.1924 -1.1143 -8.3345 20 14 3.9537 0.5570 -9.6687 21 1 4.9419 -0.3397 -10.3202 22 1 2.8752 0.8894 -10.6339 23 1 4.6298 1.8052 -9.2327 24 6 3.7829 -0.1919 -4.4493 25 1 -0.3634 0.6371 0.8064 26 1 -0.3634 0.3798 -0.9549 27 1 -0.3634 -1.0169 0.1485 28 1 3.2055 1.3485 -0.1227 29 1 1.6972 1.9841 -0.8223 30 1 1.8930 1.9016 0.9449 31 1 2.5649 -0.3969 1.9150 32 1 1.4939 -1.7514 1.3519 33 1 4.0724 -0.6724 0.0024 34 1 3.4430 -2.3768 0.0048 35 1 4.2171 -2.7390 -3.2599 36 1 2.6456 -2.7188 -2.4190 37 1 1.4550 -2.5333 -4.5598 38 1 2.5610 -3.9263 -4.6342 39 1 2.7263 -2.5792 -6.6996 40 1 4.2511 -2.5069 -5.7846 41 1 1.8195 -1.2654 -9.2170 42 1 3.6209 0.8810 -4.3447 43 1 4.8519 -0.3956 -4.5110 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597899892.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:27:05 Heat of formation + Delta-G solvation = -30.206759 kcal Electronic energy + Delta-G solvation = -21345.138069 eV Core-core repulsion = 18390.269099 eV Total energy + Delta-G solvation = -2954.868970 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.67936 -38.26537 -36.39245 -33.47302 -31.44899 -30.63062 -30.13613 -27.22884 -26.94332 -25.02318 -24.06065 -22.53022 -21.67726 -20.17703 -18.55890 -17.91401 -16.93321 -16.22541 -15.22507 -15.17570 -14.61715 -14.26678 -14.00002 -13.70362 -13.45482 -13.18559 -12.95870 -12.77210 -12.68391 -12.14050 -12.06010 -11.88396 -11.62914 -11.43344 -11.17354 -10.98584 -10.87168 -10.76716 -10.71613 -10.40886 -10.14293 -10.00995 -9.95578 -9.71088 -9.42578 -8.92809 -8.72390 -8.36377 -7.83277 -6.02392 -4.08222 3.09718 3.29593 3.37029 3.41364 3.63295 4.42815 4.44328 4.59937 4.68736 4.76498 5.12361 5.28481 5.32424 5.40557 5.50544 5.57558 5.63056 5.67730 5.75514 5.79897 5.81313 5.87842 6.04471 6.10377 6.12105 6.20681 6.32553 6.34010 6.42362 6.47921 6.51999 6.67443 6.77481 6.83516 7.02838 7.19086 7.34427 7.68959 7.92944 8.04934 8.09544 8.38479 8.76730 8.96289 9.56594 11.04245 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.032394 B = 0.004858 C = 0.004606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.152622 B = 5761.895322 C = 6077.233998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.063 4.063 3 C -0.110 4.110 4 C -0.134 4.134 5 C -0.121 4.121 6 C -0.131 4.131 7 H 0.108 0.892 8 C 0.517 3.483 9 O -0.545 6.545 10 N -0.603 5.603 11 C 0.110 3.890 12 C -0.135 4.135 13 C -0.109 4.109 14 C 0.040 3.960 15 H 0.031 0.969 16 C -0.514 4.514 17 H 0.056 0.944 18 C 0.064 3.936 19 N -0.889 5.889 20 Si 0.891 3.109 21 H -0.282 1.282 22 H -0.286 1.286 23 H -0.273 1.273 24 C 0.117 3.883 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.036 0.964 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.089 0.911 40 H 0.035 0.965 41 H 0.260 0.740 42 H 0.078 0.922 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.863 -3.898 16.174 16.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.063 4.063 3 C -0.167 4.167 4 C -0.171 4.171 5 C -0.159 4.159 6 C -0.152 4.152 7 H 0.126 0.874 8 C 0.305 3.695 9 O -0.424 6.424 10 N -0.334 5.334 11 C -0.013 4.013 12 C -0.174 4.174 13 C -0.147 4.147 14 C 0.021 3.979 15 H 0.049 0.951 16 C -0.553 4.553 17 H 0.075 0.925 18 C -0.138 4.138 19 N -0.527 5.527 20 Si 0.719 3.281 21 H -0.208 1.208 22 H -0.212 1.212 23 H -0.198 1.198 24 C -0.004 4.004 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.095 0.905 30 H 0.055 0.945 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.107 0.893 40 H 0.054 0.946 41 H 0.070 0.930 42 H 0.096 0.904 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.960 -3.322 16.010 16.379 hybrid contribution 0.336 0.132 -1.057 1.117 sum -0.624 -3.189 14.952 15.301 Atomic orbital electron populations 1.21738 0.94256 1.01319 1.02040 1.21705 0.95135 0.95428 0.94053 1.21610 1.01073 0.93706 1.00326 1.23031 0.98044 0.99274 0.96753 1.22780 0.96856 1.01453 0.94769 1.22917 0.99480 0.99803 0.93033 0.87439 1.20397 0.78060 0.87736 0.83291 1.90650 1.57833 1.13774 1.80133 1.48372 1.59769 1.06794 1.18510 1.21809 1.00455 0.80186 0.98846 1.22087 1.00162 0.99128 0.95990 1.21612 0.97962 0.98380 0.96774 1.18979 0.96544 0.91991 0.90360 0.95077 1.21075 1.11971 1.31194 0.91033 0.92530 1.24939 0.94977 0.94991 0.98870 1.69906 1.24161 1.35626 1.23048 0.86586 0.78773 0.80109 0.82601 1.20793 1.21185 1.19790 1.21972 0.96437 0.97225 0.84764 0.92552 0.92298 0.92806 0.92500 0.90467 0.94544 0.91241 0.90085 0.89816 0.90958 0.92107 0.91128 0.92396 0.92603 0.89279 0.94586 0.93015 0.90358 0.93028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.16 37.16 0.34 -1.20 16 2 C -0.06 -0.78 1.29 -153.69 -0.20 -0.98 16 3 C -0.11 -1.54 7.32 37.16 0.27 -1.27 16 4 C -0.13 -1.33 7.22 -25.92 -0.19 -1.52 16 5 C -0.12 -1.34 7.30 -25.82 -0.19 -1.52 16 6 C -0.13 -1.76 2.34 -90.87 -0.21 -1.97 16 7 H 0.11 1.33 6.92 -51.93 -0.36 0.97 16 8 C 0.52 9.27 7.05 -10.98 -0.08 9.20 16 9 O -0.55 -11.35 11.93 5.56 0.07 -11.28 16 10 N -0.60 -11.20 2.97 -172.48 -0.51 -11.72 16 11 C 0.11 1.72 6.37 -3.48 -0.02 1.70 16 12 C -0.14 -2.41 6.10 -26.39 -0.16 -2.57 16 13 C -0.11 -2.45 5.01 -26.69 -0.13 -2.58 16 14 C 0.04 1.00 2.19 -91.63 -0.20 0.80 16 15 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 16 C -0.51 -14.01 8.49 -34.44 -0.29 -14.31 16 17 H 0.06 1.53 7.75 -52.49 -0.41 1.12 16 18 C 0.06 1.75 5.36 -17.82 -0.10 1.66 16 19 N -0.89 -25.16 11.57 55.43 0.64 -24.52 16 20 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 24 C 0.12 2.56 5.66 -3.69 -0.02 2.54 16 25 H 0.06 0.57 8.14 -51.92 -0.42 0.14 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.05 0.53 8.01 -51.93 -0.42 0.11 16 28 H 0.06 0.86 6.51 -51.93 -0.34 0.52 16 29 H 0.08 1.27 6.70 -51.93 -0.35 0.92 16 30 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 32 H 0.08 0.69 8.01 -51.93 -0.42 0.28 16 33 H 0.08 1.01 7.59 -51.93 -0.39 0.62 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.07 0.89 5.69 -51.93 -0.30 0.60 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.09 2.27 6.34 -51.93 -0.33 1.94 16 40 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 42 H 0.08 1.85 7.01 -51.93 -0.36 1.48 16 43 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 326.53 15.07 4.92 4.92 Total: -1.00 -29.29 326.53 -8.53 -37.82 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -7.45 Total: 0.60 kcal Atomic # 6 Polarization: -10.85 SS G_CDS: -1.18 Total: -12.03 kcal Atomic # 7 Polarization: -36.37 SS G_CDS: 0.13 Total: -36.24 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.07 Total: -11.28 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.29 -8.53 -37.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597899892.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.616 kcal (2) G-P(sol) polarization free energy of solvation -29.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds