Wall clock time and date at job start Mon Mar 30 2020 08:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 112.85071 * 2 1 4 4 C 1.53782 * 113.61207 * 131.19188 * 2 1 3 5 5 C 1.53783 * 87.17440 * 139.94060 * 4 2 1 6 6 C 1.53782 * 113.61564 * 228.68728 * 2 1 3 7 7 H 1.08998 * 113.60955 * 334.65445 * 6 2 1 8 8 C 1.50700 * 113.61084 * 105.46979 * 6 2 1 9 9 O 1.21281 * 120.00201 * 4.62986 * 8 6 2 10 10 N 1.34777 * 119.99979 * 184.61821 * 8 6 2 11 11 C 1.46935 * 120.62770 * 359.72681 * 10 8 6 12 12 C 1.53626 * 108.54117 * 126.36595 * 11 10 8 13 13 C 1.53039 * 109.24319 * 54.85586 * 12 11 10 14 14 C 1.53043 * 109.53723 * 298.51172 * 13 12 11 15 15 H 1.09000 * 109.52261 * 301.39421 * 14 13 12 16 16 C 1.50703 * 109.49942 * 181.32088 * 14 13 12 17 17 H 1.08002 * 119.99374 * 245.82147 * 16 14 13 18 18 C 1.37872 * 120.00285 * 65.81437 * 16 14 13 19 19 N 1.31522 * 120.00094 * 355.21299 * 18 16 14 20 20 Si 1.86801 * 120.00134 * 175.21828 * 18 16 14 21 21 H 1.48496 * 109.47292 * 94.99896 * 20 18 16 22 22 H 1.48497 * 109.46786 * 214.99808 * 20 18 16 23 23 H 1.48496 * 109.46791 * 334.99503 * 20 18 16 24 24 C 1.46921 * 120.63413 * 180.02562 * 10 8 6 25 25 H 1.09008 * 109.47385 * 308.31078 * 1 2 3 26 26 H 1.09001 * 109.47205 * 68.30944 * 1 2 3 27 27 H 1.09000 * 109.47221 * 188.31089 * 1 2 3 28 28 H 1.09005 * 109.46742 * 186.85679 * 3 2 1 29 29 H 1.08996 * 109.46690 * 306.85497 * 3 2 1 30 30 H 1.08996 * 109.46919 * 66.85659 * 3 2 1 31 31 H 1.09000 * 113.61768 * 254.53045 * 4 2 1 32 32 H 1.08998 * 113.61925 * 25.35077 * 4 2 1 33 33 H 1.08998 * 113.61511 * 89.15845 * 5 4 2 34 34 H 1.08998 * 113.61369 * 220.06525 * 5 4 2 35 35 H 1.08998 * 109.58254 * 246.19764 * 11 10 8 36 36 H 1.08997 * 109.58582 * 6.62475 * 11 10 8 37 37 H 1.09002 * 109.63443 * 294.86526 * 12 11 10 38 38 H 1.09003 * 109.45635 * 174.73941 * 12 11 10 39 39 H 1.08996 * 109.45823 * 178.49164 * 13 12 11 40 40 H 1.08997 * 109.46111 * 58.52822 * 13 12 11 41 41 H 0.96992 * 119.99958 * 179.97438 * 19 18 16 42 42 H 1.09004 * 109.58312 * 353.37968 * 24 10 8 43 43 H 1.09003 * 109.58328 * 113.65712 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4100 0.0000 4 6 2.1459 -0.9280 1.0603 5 6 3.1927 -1.3160 0.0027 6 6 2.1460 -0.9302 -1.0583 7 1 1.4939 -1.7541 -1.3481 8 6 2.7253 -0.1983 -2.2415 9 8 2.7514 1.0142 -2.2511 10 7 3.2145 -0.8911 -3.2889 11 6 3.1954 -2.3604 -3.2892 12 6 2.5009 -2.8397 -4.5730 13 6 3.1994 -2.2203 -5.7856 14 6 3.0865 -0.6956 -5.7178 15 1 2.0351 -0.4089 -5.6942 16 6 3.7463 -0.0879 -6.9288 17 1 4.6342 0.5161 -6.8139 18 6 3.2166 -0.3032 -8.1834 19 7 2.1924 -1.1143 -8.3345 20 14 3.9537 0.5570 -9.6687 21 1 4.9419 -0.3397 -10.3202 22 1 2.8752 0.8894 -10.6339 23 1 4.6298 1.8052 -9.2327 24 6 3.7829 -0.1919 -4.4493 25 1 -0.3634 0.6371 0.8064 26 1 -0.3634 0.3798 -0.9549 27 1 -0.3634 -1.0169 0.1485 28 1 3.2055 1.3485 -0.1227 29 1 1.6972 1.9841 -0.8223 30 1 1.8930 1.9016 0.9449 31 1 2.5649 -0.3969 1.9150 32 1 1.4939 -1.7514 1.3519 33 1 4.0724 -0.6724 0.0024 34 1 3.4430 -2.3768 0.0048 35 1 4.2171 -2.7390 -3.2599 36 1 2.6456 -2.7188 -2.4190 37 1 1.4550 -2.5333 -4.5598 38 1 2.5610 -3.9263 -4.6342 39 1 2.7263 -2.5792 -6.6996 40 1 4.2511 -2.5069 -5.7846 41 1 1.8195 -1.2654 -9.2170 42 1 3.6209 0.8810 -4.3447 43 1 4.8519 -0.3956 -4.5110 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597899892.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:27:04 Heat of formation + Delta-G solvation = -46.097267 kcal Electronic energy + Delta-G solvation = -21345.827133 eV Core-core repulsion = 18390.269099 eV Total energy + Delta-G solvation = -2955.558034 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.86807 -39.61880 -37.91375 -35.35599 -33.14296 -32.07836 -31.42746 -28.31199 -28.15767 -26.86823 -25.55294 -23.44887 -23.31424 -21.72191 -20.05280 -19.06045 -18.56472 -17.97194 -16.71363 -16.59814 -16.21049 -15.46759 -15.26603 -15.08386 -14.96024 -14.57648 -14.36432 -14.12071 -13.96152 -13.68081 -13.59369 -13.04398 -12.90412 -12.80004 -12.62894 -12.60037 -12.32601 -12.13923 -12.00396 -11.83942 -11.71984 -11.57377 -11.25666 -11.14852 -10.91789 -10.87369 -10.43737 -10.13927 -9.42397 -8.13698 -6.27497 1.38350 1.40259 1.50916 1.72896 2.20308 2.43115 3.14156 3.46043 3.65627 3.66544 3.87648 3.97397 4.19126 4.25128 4.38274 4.38500 4.51879 4.60927 4.62048 4.72575 4.79484 4.82696 4.86606 4.88597 4.95462 4.97553 5.05074 5.09070 5.11650 5.19032 5.24925 5.30122 5.38288 5.47869 5.54198 5.58360 5.62425 5.69147 5.91351 6.09525 6.32628 6.66179 6.82636 7.35239 7.40595 8.91391 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.032394 B = 0.004858 C = 0.004606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.152622 B = 5761.895322 C = 6077.233998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.073 4.073 3 C -0.104 4.104 4 C -0.114 4.114 5 C -0.114 4.114 6 C -0.133 4.133 7 H 0.128 0.872 8 C 0.507 3.493 9 O -0.584 6.584 10 N -0.609 5.609 11 C 0.112 3.888 12 C -0.128 4.128 13 C -0.102 4.102 14 C 0.042 3.958 15 H -0.014 1.014 16 C -0.538 4.538 17 H 0.051 0.949 18 C 0.017 3.983 19 N -0.914 5.914 20 Si 0.954 3.046 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.272 1.272 24 C 0.131 3.869 25 H 0.067 0.933 26 H 0.033 0.967 27 H 0.076 0.924 28 H 0.038 0.962 29 H 0.041 0.959 30 H 0.055 0.945 31 H 0.078 0.922 32 H 0.107 0.893 33 H 0.068 0.932 34 H 0.100 0.900 35 H 0.080 0.920 36 H 0.112 0.888 37 H 0.043 0.957 38 H 0.090 0.910 39 H 0.055 0.945 40 H 0.038 0.962 41 H 0.262 0.738 42 H 0.049 0.951 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.617 -5.988 18.365 19.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.074 4.074 3 C -0.162 4.162 4 C -0.152 4.152 5 C -0.152 4.152 6 C -0.153 4.153 7 H 0.146 0.854 8 C 0.297 3.703 9 O -0.465 6.465 10 N -0.341 5.341 11 C -0.010 4.010 12 C -0.166 4.166 13 C -0.141 4.141 14 C 0.023 3.977 15 H 0.004 0.996 16 C -0.577 4.577 17 H 0.069 0.931 18 C -0.182 4.182 19 N -0.553 5.553 20 Si 0.780 3.220 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.196 1.196 24 C 0.008 3.992 25 H 0.086 0.914 26 H 0.052 0.948 27 H 0.095 0.905 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.126 0.874 33 H 0.087 0.913 34 H 0.119 0.881 35 H 0.098 0.902 36 H 0.130 0.870 37 H 0.061 0.939 38 H 0.108 0.892 39 H 0.073 0.927 40 H 0.057 0.943 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.712 -5.435 18.220 19.027 hybrid contribution 0.238 0.855 -1.756 1.968 sum -0.475 -4.580 16.464 17.096 Atomic orbital electron populations 1.21732 0.93413 1.02838 1.01134 1.21804 0.95856 0.94541 0.95190 1.21479 0.99752 0.95107 0.99821 1.22985 0.97288 0.98994 0.95894 1.22800 0.95976 1.02847 0.93596 1.23115 1.00825 1.00221 0.91187 0.85422 1.21408 0.77138 0.87629 0.84078 1.90647 1.59046 1.15841 1.80999 1.48473 1.59779 1.08255 1.17576 1.22035 1.01979 0.77927 0.99017 1.21996 0.98823 1.00859 0.94923 1.21401 0.98312 0.96542 0.97799 1.18872 0.93751 0.93937 0.91161 0.99606 1.21439 1.12173 1.31564 0.92506 0.93051 1.25699 0.95433 0.95554 1.01558 1.70036 1.25141 1.36491 1.23655 0.85599 0.78164 0.79093 0.79158 1.19647 1.20849 1.19641 1.21488 0.96485 0.95919 0.85284 0.91411 0.94824 0.90542 0.94245 0.94037 0.92592 0.90300 0.87418 0.91329 0.88119 0.90219 0.86969 0.93854 0.89200 0.92681 0.94300 0.92938 0.93266 0.92511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.73 9.16 71.98 0.66 -2.07 16 2 C -0.07 -1.66 1.29 -51.65 -0.07 -1.73 16 3 C -0.10 -2.92 7.32 71.98 0.53 -2.40 16 4 C -0.11 -1.77 7.22 31.12 0.22 -1.54 16 5 C -0.11 -2.09 7.30 31.18 0.23 -1.86 16 6 C -0.13 -3.22 2.34 -10.95 -0.03 -3.24 16 7 H 0.13 2.61 6.92 -2.39 -0.02 2.59 16 8 C 0.51 18.15 7.05 87.66 0.62 18.77 16 9 O -0.58 -25.48 11.93 -3.03 -0.04 -25.51 16 10 N -0.61 -22.47 2.97 -817.98 -2.43 -24.89 16 11 C 0.11 3.17 6.37 86.51 0.55 3.72 16 12 C -0.13 -4.35 6.10 30.82 0.19 -4.16 16 13 C -0.10 -4.66 5.01 30.62 0.15 -4.50 16 14 C 0.04 2.18 2.19 -11.45 -0.03 2.15 16 15 H -0.01 -0.86 8.14 -2.39 -0.02 -0.87 16 16 C -0.54 -30.50 8.49 25.60 0.22 -30.28 16 17 H 0.05 2.88 7.75 -2.91 -0.02 2.86 16 18 C 0.02 0.94 5.36 84.65 0.45 1.40 16 19 N -0.91 -53.34 11.57 21.45 0.25 -53.09 16 20 Si 0.95 44.38 29.54 68.60 2.03 46.40 16 21 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 22 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 23 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 24 C 0.13 5.95 5.66 86.38 0.49 6.44 16 25 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 26 H 0.03 0.83 8.14 -2.39 -0.02 0.82 16 27 H 0.08 1.20 8.01 -2.39 -0.02 1.18 16 28 H 0.04 1.21 6.51 -2.38 -0.02 1.19 16 29 H 0.04 1.43 6.70 -2.39 -0.02 1.42 16 30 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.08 1.12 8.10 -2.39 -0.02 1.11 16 32 H 0.11 1.17 8.01 -2.39 -0.02 1.15 16 33 H 0.07 1.49 7.59 -2.39 -0.02 1.47 16 34 H 0.10 1.31 8.14 -2.39 -0.02 1.30 16 35 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.11 2.29 5.69 -2.39 -0.01 2.27 16 37 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 39 H 0.05 2.88 6.34 -2.39 -0.02 2.86 16 40 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 42 H 0.05 2.48 7.01 -2.39 -0.02 2.46 16 43 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -68.59 326.53 4.97 -63.63 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: 0.96 Total: 12.77 kcal Atomic # 6 Polarization: -23.50 SS G_CDS: 4.19 Total: -19.31 kcal Atomic # 7 Polarization: -75.81 SS G_CDS: -2.18 Total: -77.98 kcal Atomic # 8 Polarization: -25.48 SS G_CDS: -0.04 Total: -25.51 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Total: -68.59 4.97 -63.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597899892.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.528 kcal (2) G-P(sol) polarization free energy of solvation -68.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds