Wall clock time and date at job start Mon Mar 30 2020 06:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 119.99955 * 2 1 4 4 H 1.48502 * 109.47317 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47211 * 300.00182 * 3 2 1 6 6 H 1.48507 * 109.47345 * 59.99945 * 3 2 1 7 7 C 1.37875 * 120.00041 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99970 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00042 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47331 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.47004 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00413 * 0.27039 * 11 10 9 13 13 N 1.34784 * 119.99635 * 179.97438 * 11 10 9 14 14 C 1.46918 * 120.63039 * 359.71713 * 13 11 10 15 15 C 1.53629 * 108.54410 * 126.36956 * 14 13 11 16 16 C 1.53042 * 109.24095 * 54.85227 * 15 14 13 17 17 C 1.52998 * 109.45112 * 178.49679 * 16 15 14 18 18 C 1.53781 * 113.61727 * 279.20309 * 17 16 15 19 19 C 1.53955 * 87.01930 * 220.04511 * 18 17 16 20 20 C 1.53773 * 113.61497 * 181.59422 * 17 16 15 21 21 C 1.53042 * 109.54144 * 298.51747 * 16 15 14 22 22 C 1.46931 * 120.62757 * 179.97438 * 13 11 10 23 23 H 0.97000 * 120.00297 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47392 * 59.99708 * 9 7 2 25 25 H 1.09002 * 109.47260 * 299.99953 * 9 7 2 26 26 H 1.09005 * 109.47089 * 59.99750 * 10 9 7 27 27 H 1.09002 * 109.46787 * 300.00092 * 10 9 7 28 28 H 1.08995 * 109.59003 * 246.20126 * 14 13 11 29 29 H 1.08997 * 109.58851 * 6.63324 * 14 13 11 30 30 H 1.09001 * 109.63104 * 294.86584 * 15 14 13 31 31 H 1.08998 * 109.46269 * 174.74377 * 15 14 13 32 32 H 1.09006 * 109.45415 * 58.53401 * 16 15 14 33 33 H 1.09004 * 112.84756 * 50.39558 * 17 16 15 34 34 H 1.08996 * 113.61391 * 334.56716 * 18 17 16 35 35 H 1.08999 * 113.61469 * 105.46601 * 18 17 16 36 36 H 1.08996 * 113.53570 * 270.80806 * 19 18 17 37 37 H 1.08997 * 113.66297 * 139.93216 * 19 18 17 38 38 H 1.09007 * 113.61722 * 254.53299 * 20 17 16 39 39 H 1.09003 * 113.62024 * 25.35095 * 20 17 16 40 40 H 1.08998 * 109.49049 * 301.40836 * 21 16 15 41 41 H 1.08996 * 109.52462 * 181.32960 * 21 16 15 42 42 H 1.08994 * 109.58636 * 353.37407 * 22 13 11 43 43 H 1.09001 * 109.58241 * 113.65444 * 22 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4917 -4.9671 -0.0012 12 8 0.2790 -4.9672 -0.0065 13 7 2.1657 -6.1344 -0.0018 14 6 3.6348 -6.1505 -0.0081 15 6 4.1189 -7.0172 1.1643 16 6 3.4750 -8.4022 1.0672 17 6 3.9829 -9.2816 2.2116 18 6 5.3666 -9.8983 1.9472 19 6 4.8275 -11.1863 2.5957 20 6 3.4235 -10.7136 2.1830 21 6 1.9536 -8.2673 1.1643 22 6 1.4450 -7.4148 -0.0019 23 1 -0.4850 0.8400 -0.0004 24 1 0.6240 -2.5567 -0.8902 25 1 0.6247 -2.5571 0.8897 26 1 2.8720 -3.6043 0.8895 27 1 2.8719 -3.6043 -0.8905 28 1 3.9916 -6.5707 -0.9484 29 1 4.0119 -5.1343 0.1069 30 1 3.8353 -6.5495 2.1071 31 1 5.2034 -7.1162 1.1191 32 1 3.7389 -8.8592 0.1134 33 1 3.8987 -8.7992 3.1855 34 1 5.6009 -10.0075 0.8884 35 1 6.1701 -9.4268 2.5130 36 1 4.9755 -11.2252 3.6748 37 1 5.1475 -12.0975 2.0904 38 1 2.6605 -10.8996 2.9389 39 1 3.1241 -11.0458 1.1889 40 1 1.6905 -7.7879 2.1071 41 1 1.4966 -9.2558 1.1189 42 1 0.3770 -7.2330 0.1171 43 1 1.6245 -7.9350 -0.9428 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597990411.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:04 Heat of formation + Delta-G solvation = -44.942644 kcal Electronic energy + Delta-G solvation = -20282.279827 eV Core-core repulsion = 17326.771862 eV Total energy + Delta-G solvation = -2955.507966 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.18512 -38.97955 -36.62221 -33.49934 -32.72108 -31.45642 -30.48645 -27.01182 -26.00127 -25.46818 -23.25028 -23.06581 -21.49980 -20.23899 -19.65859 -18.40854 -17.02235 -15.94468 -15.69330 -15.35141 -15.21037 -15.00942 -14.41245 -14.10623 -14.01866 -13.33752 -13.05640 -12.93063 -12.69994 -12.57617 -12.17184 -12.01203 -11.83054 -11.69570 -11.26252 -11.14252 -10.93576 -10.89156 -10.83956 -10.70327 -10.55092 -10.18164 -10.05298 -9.93356 -9.56783 -9.12850 -8.93246 -8.35649 -8.27734 -5.94171 -3.98428 3.27446 3.33667 3.36421 3.41188 3.44497 4.28528 4.36515 4.43478 4.48639 4.58131 4.74593 4.92766 4.97399 5.15256 5.24087 5.31428 5.39175 5.40755 5.46173 5.48537 5.50823 5.59044 5.63178 5.70561 5.71981 5.80013 5.86518 5.89282 6.01282 6.05407 6.11527 6.20489 6.25282 6.25879 6.39021 6.81593 6.96014 7.77047 7.82925 7.89363 8.09810 8.41114 8.80752 9.10463 9.64994 11.16882 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.038164 B = 0.003455 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.501648 B = 8102.281964 C = 8581.393152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.525 4.525 8 H 0.056 0.944 9 C 0.037 3.963 10 C -0.128 4.128 11 C 0.512 3.488 12 O -0.536 6.536 13 N -0.625 5.625 14 C 0.108 3.892 15 C -0.129 4.129 16 C -0.076 4.076 17 C -0.104 4.104 18 C -0.137 4.137 19 C -0.145 4.145 20 C -0.137 4.137 21 C -0.126 4.126 22 C 0.110 3.890 23 H 0.260 0.740 24 H 0.023 0.977 25 H 0.023 0.977 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.064 0.936 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.080 0.920 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.089 0.911 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.261 -22.020 3.163 24.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.564 4.564 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.168 4.168 11 C 0.302 3.698 12 O -0.412 6.412 13 N -0.361 5.361 14 C -0.015 4.015 15 C -0.167 4.167 16 C -0.094 4.094 17 C -0.122 4.122 18 C -0.174 4.174 19 C -0.182 4.182 20 C -0.174 4.174 21 C -0.164 4.164 22 C -0.013 4.013 23 H 0.070 0.930 24 H 0.042 0.958 25 H 0.041 0.959 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.081 0.919 29 H 0.110 0.890 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.106 0.894 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.098 0.902 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.108 0.892 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 10.431 -21.878 3.156 24.443 hybrid contribution 0.544 0.849 0.035 1.009 sum 10.975 -21.030 3.192 23.935 Atomic orbital electron populations 1.70012 1.06055 1.26434 1.50355 1.25031 0.94824 0.99230 0.95358 0.86542 0.80009 0.83870 0.77570 1.19742 1.21031 1.21031 1.21261 0.92938 0.91015 1.51153 0.92581 1.18909 0.93198 0.89413 0.98579 1.21870 1.00690 0.92061 1.02180 1.21569 0.88397 0.85539 0.74248 1.90647 1.14454 1.87202 1.48868 1.48293 1.06467 1.05849 1.75463 1.21773 0.80145 1.01624 0.97948 1.22025 1.00167 0.95230 0.99270 1.21138 0.95029 0.95160 0.98078 1.22583 0.95967 0.94547 0.99127 1.22978 0.96812 0.96655 1.00969 1.22842 0.97039 0.97700 1.00623 1.22920 0.96594 0.96248 1.01666 1.21912 0.95338 0.99833 0.99345 1.21460 0.98369 0.84039 0.97409 0.93025 0.95847 0.95886 0.90351 0.90358 0.91896 0.89047 0.91364 0.90947 0.91162 0.89395 0.90185 0.91683 0.90443 0.91742 0.91711 0.90158 0.91584 0.91115 0.89237 0.92368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.74 13.29 55.43 0.74 -27.01 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.83 29.54 -169.99 -5.02 16.80 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 7 C -0.53 -15.08 9.11 -34.44 -0.31 -15.39 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 10 C -0.13 -2.69 3.98 -27.88 -0.11 -2.80 16 11 C 0.51 10.37 7.70 -10.98 -0.08 10.29 16 12 O -0.54 -13.12 15.40 5.56 0.09 -13.03 16 13 N -0.62 -9.54 2.97 -172.54 -0.51 -10.05 16 14 C 0.11 1.27 6.37 -3.49 -0.02 1.24 16 15 C -0.13 -1.25 5.36 -26.38 -0.14 -1.39 16 16 C -0.08 -0.67 1.87 -90.58 -0.17 -0.84 16 17 C -0.10 -0.82 3.11 -89.81 -0.28 -1.10 16 18 C -0.14 -0.96 7.63 -25.83 -0.20 -1.16 16 19 C -0.14 -0.97 8.09 -25.83 -0.21 -1.18 16 20 C -0.14 -0.99 6.73 -25.92 -0.17 -1.16 16 21 C -0.13 -1.32 5.20 -26.63 -0.14 -1.46 16 22 C 0.11 1.46 6.43 -3.73 -0.02 1.43 16 23 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 24 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 25 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 26 H 0.08 1.51 7.70 -51.93 -0.40 1.11 16 27 H 0.08 1.50 7.93 -51.93 -0.41 1.09 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.09 1.09 5.93 -51.93 -0.31 0.78 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.61 7.98 -51.93 -0.41 0.19 16 33 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.55 7.99 -51.93 -0.41 0.13 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.08 0.57 8.10 -51.93 -0.42 0.15 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.07 0.63 7.45 -51.93 -0.39 0.25 16 42 H 0.09 1.38 7.01 -51.93 -0.36 1.02 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 337.55 15.07 5.09 5.09 Total: -1.00 -33.42 337.55 -9.43 -42.86 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -7.73 Total: -3.61 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: -2.08 Total: -11.05 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: 0.22 Total: -37.06 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: 0.09 Total: -13.03 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.42 -9.43 -42.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597990411.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.087 kcal (2) G-P(sol) polarization free energy of solvation -33.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds