Wall clock time and date at job start Mon Mar 30 2020 06:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 119.99955 * 2 1 4 4 H 1.48502 * 109.47317 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47211 * 300.00182 * 3 2 1 6 6 H 1.48507 * 109.47345 * 59.99945 * 3 2 1 7 7 C 1.37875 * 120.00041 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99970 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00042 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47331 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.47004 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00413 * 0.27039 * 11 10 9 13 13 N 1.34784 * 119.99635 * 179.97438 * 11 10 9 14 14 C 1.46918 * 120.63039 * 359.71713 * 13 11 10 15 15 C 1.53629 * 108.54410 * 126.36956 * 14 13 11 16 16 C 1.53042 * 109.24095 * 54.85227 * 15 14 13 17 17 C 1.52998 * 109.45112 * 178.49679 * 16 15 14 18 18 C 1.53781 * 113.61727 * 279.20309 * 17 16 15 19 19 C 1.53955 * 87.01930 * 220.04511 * 18 17 16 20 20 C 1.53773 * 113.61497 * 181.59422 * 17 16 15 21 21 C 1.53042 * 109.54144 * 298.51747 * 16 15 14 22 22 C 1.46931 * 120.62757 * 179.97438 * 13 11 10 23 23 H 0.97000 * 120.00297 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47392 * 59.99708 * 9 7 2 25 25 H 1.09002 * 109.47260 * 299.99953 * 9 7 2 26 26 H 1.09005 * 109.47089 * 59.99750 * 10 9 7 27 27 H 1.09002 * 109.46787 * 300.00092 * 10 9 7 28 28 H 1.08995 * 109.59003 * 246.20126 * 14 13 11 29 29 H 1.08997 * 109.58851 * 6.63324 * 14 13 11 30 30 H 1.09001 * 109.63104 * 294.86584 * 15 14 13 31 31 H 1.08998 * 109.46269 * 174.74377 * 15 14 13 32 32 H 1.09006 * 109.45415 * 58.53401 * 16 15 14 33 33 H 1.09004 * 112.84756 * 50.39558 * 17 16 15 34 34 H 1.08996 * 113.61391 * 334.56716 * 18 17 16 35 35 H 1.08999 * 113.61469 * 105.46601 * 18 17 16 36 36 H 1.08996 * 113.53570 * 270.80806 * 19 18 17 37 37 H 1.08997 * 113.66297 * 139.93216 * 19 18 17 38 38 H 1.09007 * 113.61722 * 254.53299 * 20 17 16 39 39 H 1.09003 * 113.62024 * 25.35095 * 20 17 16 40 40 H 1.08998 * 109.49049 * 301.40836 * 21 16 15 41 41 H 1.08996 * 109.52462 * 181.32960 * 21 16 15 42 42 H 1.08994 * 109.58636 * 353.37407 * 22 13 11 43 43 H 1.09001 * 109.58241 * 113.65444 * 22 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4917 -4.9671 -0.0012 12 8 0.2790 -4.9672 -0.0065 13 7 2.1657 -6.1344 -0.0018 14 6 3.6348 -6.1505 -0.0081 15 6 4.1189 -7.0172 1.1643 16 6 3.4750 -8.4022 1.0672 17 6 3.9829 -9.2816 2.2116 18 6 5.3666 -9.8983 1.9472 19 6 4.8275 -11.1863 2.5957 20 6 3.4235 -10.7136 2.1830 21 6 1.9536 -8.2673 1.1643 22 6 1.4450 -7.4148 -0.0019 23 1 -0.4850 0.8400 -0.0004 24 1 0.6240 -2.5567 -0.8902 25 1 0.6247 -2.5571 0.8897 26 1 2.8720 -3.6043 0.8895 27 1 2.8719 -3.6043 -0.8905 28 1 3.9916 -6.5707 -0.9484 29 1 4.0119 -5.1343 0.1069 30 1 3.8353 -6.5495 2.1071 31 1 5.2034 -7.1162 1.1191 32 1 3.7389 -8.8592 0.1134 33 1 3.8987 -8.7992 3.1855 34 1 5.6009 -10.0075 0.8884 35 1 6.1701 -9.4268 2.5130 36 1 4.9755 -11.2252 3.6748 37 1 5.1475 -12.0975 2.0904 38 1 2.6605 -10.8996 2.9389 39 1 3.1241 -11.0458 1.1889 40 1 1.6905 -7.7879 2.1071 41 1 1.4966 -9.2558 1.1189 42 1 0.3770 -7.2330 0.1171 43 1 1.6245 -7.9350 -0.9428 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597990411.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:03 Heat of formation + Delta-G solvation = -64.304906 kcal Electronic energy + Delta-G solvation = -20283.119438 eV Core-core repulsion = 17326.771862 eV Total energy + Delta-G solvation = -2956.347577 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.29934 -39.98978 -37.77517 -35.61450 -33.92608 -32.98348 -31.88046 -28.33573 -27.16213 -26.47490 -24.43456 -24.05861 -23.04953 -21.34777 -20.26897 -19.70344 -18.84122 -17.68800 -16.73777 -16.68955 -16.42262 -16.18408 -15.87762 -15.09000 -15.06651 -14.55116 -14.50485 -14.18695 -13.86487 -13.57967 -13.48621 -13.22005 -13.14028 -12.85005 -12.58218 -12.47669 -12.43574 -12.16207 -11.95215 -11.71425 -11.61294 -11.51268 -11.29175 -11.28669 -10.87213 -10.78858 -10.58947 -10.58198 -9.57796 -8.18516 -6.32941 1.41933 1.43722 1.57092 1.68647 2.09148 2.43188 3.14407 3.61274 3.71378 3.72611 3.85986 4.00297 4.05858 4.19295 4.24195 4.30103 4.43178 4.46149 4.49636 4.51774 4.63592 4.77724 4.86719 4.90096 4.96927 4.98708 5.01597 5.03385 5.07987 5.14882 5.16206 5.17030 5.27496 5.40941 5.47835 5.56332 5.60837 5.69227 5.74573 5.84293 6.16653 6.43262 6.85661 7.27445 7.37550 8.94622 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.038164 B = 0.003455 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.501648 B = 8102.281964 C = 8581.393152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.009 4.009 3 Si 0.976 3.024 4 H -0.251 1.251 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.541 4.541 8 H 0.077 0.923 9 C 0.043 3.957 10 C -0.115 4.115 11 C 0.507 3.493 12 O -0.594 6.594 13 N -0.612 5.612 14 C 0.099 3.901 15 C -0.123 4.123 16 C -0.069 4.069 17 C -0.104 4.104 18 C -0.132 4.132 19 C -0.144 4.144 20 C -0.138 4.138 21 C -0.117 4.117 22 C 0.105 3.895 23 H 0.263 0.737 24 H -0.019 1.019 25 H -0.021 1.021 26 H 0.100 0.900 27 H 0.102 0.898 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.053 0.947 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.060 0.940 39 H 0.085 0.915 40 H 0.046 0.954 41 H 0.089 0.911 42 H 0.059 0.941 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.695 -23.004 2.937 27.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.206 4.206 3 Si 0.799 3.201 4 H -0.174 1.174 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.579 4.579 8 H 0.095 0.905 9 C 0.005 3.995 10 C -0.154 4.154 11 C 0.297 3.703 12 O -0.475 6.475 13 N -0.346 5.346 14 C -0.023 4.023 15 C -0.161 4.161 16 C -0.088 4.088 17 C -0.123 4.123 18 C -0.169 4.169 19 C -0.181 4.181 20 C -0.175 4.175 21 C -0.156 4.156 22 C -0.017 4.017 23 H 0.072 0.928 24 H -0.001 1.001 25 H -0.002 1.002 26 H 0.119 0.881 27 H 0.121 0.879 28 H 0.107 0.893 29 H 0.109 0.891 30 H 0.072 0.928 31 H 0.116 0.884 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.106 0.894 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.104 0.896 40 H 0.065 0.935 41 H 0.107 0.893 42 H 0.077 0.923 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 13.935 -22.919 2.935 26.983 hybrid contribution -0.540 1.061 0.106 1.195 sum 13.394 -21.858 3.041 25.815 Atomic orbital electron populations 1.70193 1.08392 1.27773 1.51543 1.26173 0.95743 1.04064 0.94607 0.85244 0.79346 0.77908 0.77560 1.17435 1.20592 1.20622 1.21733 0.94004 0.91492 1.50681 0.90503 1.18690 0.93673 0.92583 0.94507 1.21622 0.99258 0.90237 1.04320 1.21410 0.87637 0.86854 0.74360 1.90625 1.16740 1.88077 1.52029 1.48293 1.08265 1.05020 1.72983 1.22141 0.77356 1.02565 1.00226 1.22003 1.01676 0.94970 0.97486 1.21116 0.93314 0.95072 0.99270 1.22533 0.96968 0.94549 0.98221 1.22974 0.96095 0.96392 1.01483 1.22845 0.96510 0.97973 1.00786 1.22944 0.96914 0.95761 1.01914 1.21852 0.96974 0.99786 0.96939 1.21650 0.96738 0.83455 0.99862 0.92846 1.00087 1.00220 0.88148 0.87945 0.89292 0.89054 0.92829 0.88379 0.89741 0.90274 0.89441 0.91450 0.90406 0.91074 0.92073 0.89632 0.93484 0.89264 0.92253 0.90004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.56 13.29 21.45 0.28 -60.28 16 2 C -0.01 -0.51 5.46 84.65 0.46 -0.05 16 3 Si 0.98 44.73 29.54 68.60 2.03 46.75 16 4 H -0.25 -10.54 7.11 99.48 0.71 -9.83 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 7 C -0.54 -31.35 9.11 25.60 0.23 -31.11 16 8 H 0.08 4.04 7.74 -2.91 -0.02 4.01 16 9 C 0.04 2.48 4.26 29.85 0.13 2.61 16 10 C -0.11 -4.84 3.98 29.85 0.12 -4.72 16 11 C 0.51 21.09 7.70 87.65 0.67 21.76 16 12 O -0.59 -30.94 15.40 -3.01 -0.05 -30.99 16 13 N -0.61 -18.24 2.97 -818.17 -2.43 -20.66 16 14 C 0.10 2.03 6.37 86.51 0.55 2.58 16 15 C -0.12 -2.03 5.36 30.82 0.17 -1.86 16 16 C -0.07 -1.04 1.87 -10.77 -0.02 -1.06 16 17 C -0.10 -1.38 3.11 -10.27 -0.03 -1.41 16 18 C -0.13 -1.43 7.63 31.18 0.24 -1.20 16 19 C -0.14 -1.56 8.09 31.18 0.25 -1.30 16 20 C -0.14 -1.66 6.73 31.12 0.21 -1.45 16 21 C -0.12 -2.29 5.20 30.66 0.16 -2.13 16 22 C 0.11 2.71 6.43 86.35 0.55 3.27 16 23 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 24 H -0.02 -1.26 8.10 -2.39 -0.02 -1.28 16 25 H -0.02 -1.35 8.10 -2.39 -0.02 -1.37 16 26 H 0.10 3.76 7.70 -2.38 -0.02 3.74 16 27 H 0.10 3.80 7.93 -2.39 -0.02 3.78 16 28 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.09 1.91 5.93 -2.39 -0.01 1.89 16 30 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.08 1.10 7.98 -2.38 -0.02 1.08 16 33 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 34 H 0.09 0.85 7.99 -2.39 -0.02 0.83 16 35 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 39 H 0.09 0.96 8.10 -2.39 -0.02 0.94 16 40 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.09 1.43 7.45 -2.39 -0.02 1.41 16 42 H 0.06 1.91 7.01 -2.39 -0.02 1.89 16 43 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -76.79 337.55 4.48 -72.31 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: 0.95 Total: 8.94 kcal Atomic # 6 Polarization: -19.77 SS G_CDS: 3.69 Total: -16.08 kcal Atomic # 7 Polarization: -78.80 SS G_CDS: -2.14 Total: -80.94 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: -0.05 Total: -30.99 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Total: -76.79 4.48 -72.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597990411.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.004 kcal (2) G-P(sol) polarization free energy of solvation -76.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds