Wall clock time and date at job start Mon Mar 30 2020 08:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.52992 * 109.47223 * 240.00442 * 2 1 3 5 5 C 1.53002 * 109.47106 * 299.99874 * 4 2 1 6 6 C 1.53002 * 109.47128 * 300.00123 * 5 4 2 7 7 C 1.52997 * 109.46978 * 59.99726 * 6 5 4 8 8 C 1.52997 * 109.47127 * 119.99936 * 2 1 3 9 9 H 1.09002 * 109.47153 * 180.02562 * 8 2 1 10 10 C 1.50701 * 109.47212 * 300.00129 * 8 2 1 11 11 O 1.21280 * 119.99781 * 0.02562 * 10 8 2 12 12 N 1.34780 * 119.99795 * 179.97438 * 10 8 2 13 13 C 1.47055 * 136.05788 * 359.63591 * 12 10 8 14 14 C 1.53757 * 87.88929 * 152.95713 * 13 12 10 15 15 C 1.50708 * 114.26588 * 139.78818 * 14 13 12 16 16 H 1.08001 * 119.99835 * 266.47967 * 15 14 13 17 17 C 1.37879 * 119.99889 * 86.47999 * 15 14 13 18 18 N 1.31516 * 119.99620 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99820 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47146 * 60.00248 * 19 17 15 21 21 H 1.48503 * 109.47074 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47194 * 299.99960 * 19 17 15 23 23 C 1.47065 * 136.05284 * 179.97438 * 12 10 8 24 24 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 25 25 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 26 26 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46716 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 29 29 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 30 30 H 1.09002 * 109.47103 * 179.97438 * 4 2 1 31 31 H 1.08996 * 109.47747 * 59.99547 * 4 2 1 32 32 H 1.08996 * 109.47407 * 180.02562 * 5 4 2 33 33 H 1.09002 * 109.47596 * 60.00070 * 5 4 2 34 34 H 1.09002 * 109.47097 * 299.99925 * 6 5 4 35 35 H 1.08998 * 109.47844 * 180.02562 * 6 5 4 36 36 H 1.09000 * 109.47140 * 180.02562 * 7 6 5 37 37 H 1.09002 * 109.47497 * 60.00450 * 7 6 5 38 38 H 1.09004 * 113.47070 * 267.68929 * 13 12 10 39 39 H 1.09003 * 113.47263 * 38.13096 * 13 12 10 40 40 H 1.08997 * 114.39868 * 272.67332 * 14 13 12 41 41 H 0.97003 * 119.99026 * 180.02562 * 18 17 15 42 42 H 1.08997 * 113.46988 * 321.86829 * 23 12 10 43 43 H 1.09002 * 113.46903 * 92.31116 * 23 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 1.5301 -2.1636 -1.2493 6 6 2.0401 -2.8850 -0.0001 7 6 1.5301 -2.1638 1.2491 8 6 2.0401 -0.7212 1.2492 9 1 3.1301 -0.7208 1.2495 10 6 1.5377 -0.0108 2.4797 11 8 0.8400 0.9750 2.3684 12 7 1.8629 -0.4716 3.7038 13 6 2.6480 -1.5943 4.2385 14 6 2.9084 -0.7414 5.4911 15 6 2.8493 -1.5094 6.7865 16 1 1.9265 -1.5547 7.3458 17 6 3.9733 -2.1541 7.2575 18 7 5.0971 -2.0985 6.5766 19 14 3.9003 -3.1053 8.8635 20 1 2.8870 -4.1853 8.7535 21 1 5.2304 -3.7023 9.1462 22 1 3.5255 -2.1853 9.9672 23 6 1.5838 -0.0764 5.0926 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1301 -0.7207 -1.2494 31 1 1.6767 -0.2074 -2.1392 32 1 1.8938 -2.6776 -2.1391 33 1 0.4401 -2.1638 -1.2493 34 1 3.1301 -2.8849 -0.0001 35 1 1.6772 -3.9128 -0.0003 36 1 1.8938 -2.6773 2.1391 37 1 0.4401 -2.1638 1.2492 38 1 2.0523 -2.4854 4.4363 39 1 3.5483 -1.8078 3.6622 40 1 3.7767 -0.0868 5.4176 41 1 5.8878 -2.5524 6.9079 42 1 1.5774 1.0030 5.2438 43 1 0.7072 -0.5670 5.5157 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598022110.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:17:57 Heat of formation + Delta-G solvation = -25.410734 kcal Electronic energy + Delta-G solvation = -21372.234745 eV Core-core repulsion = 18417.573746 eV Total energy + Delta-G solvation = -2954.660999 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.50326 -38.53979 -36.69994 -33.08589 -32.62264 -31.27157 -28.93495 -27.11191 -26.46327 -25.00025 -24.90500 -23.10922 -21.06912 -20.38548 -18.58450 -17.86573 -16.80476 -16.26078 -15.46702 -14.95891 -14.59611 -14.53006 -14.45090 -14.16326 -13.50683 -13.24675 -12.89063 -12.85602 -12.27544 -12.04742 -11.74893 -11.63394 -11.52662 -11.38431 -11.26952 -11.04391 -10.98642 -10.91254 -10.83034 -10.69037 -10.44525 -10.31525 -10.02366 -9.88371 -9.44671 -9.18498 -8.72927 -8.55269 -7.80346 -6.19083 -4.24668 3.20850 3.24507 3.30094 3.32091 3.64081 4.32587 4.67675 4.74702 4.81194 5.09723 5.16587 5.22290 5.31649 5.41862 5.46536 5.52723 5.59836 5.71518 5.86192 5.94413 6.00723 6.03563 6.08589 6.13041 6.13776 6.16197 6.19869 6.26233 6.28669 6.32370 6.41688 6.44785 6.49220 6.57013 6.70240 6.74381 6.80731 6.84744 7.54768 7.78687 8.17722 8.59628 8.79018 8.84279 9.42137 10.90614 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.030302 B = 0.004859 C = 0.004505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.800257 B = 5761.348789 C = 6214.288467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.039 4.039 3 C -0.154 4.154 4 C -0.109 4.109 5 C -0.122 4.122 6 C -0.116 4.116 7 C -0.114 4.114 8 C -0.089 4.089 9 H 0.090 0.910 10 C 0.537 3.463 11 O -0.557 6.557 12 N -0.642 5.642 13 C 0.099 3.901 14 C 0.035 3.965 15 C -0.518 4.518 16 H 0.062 0.938 17 C 0.069 3.931 18 N -0.886 5.886 19 Si 0.895 3.105 20 H -0.275 1.275 21 H -0.287 1.287 22 H -0.275 1.275 23 C 0.098 3.902 24 H 0.084 0.916 25 H 0.044 0.956 26 H 0.050 0.950 27 H 0.044 0.956 28 H 0.046 0.954 29 H 0.086 0.914 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.058 0.942 40 H 0.068 0.932 41 H 0.264 0.736 42 H 0.056 0.944 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.673 -0.752 -13.108 13.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.039 4.039 3 C -0.211 4.211 4 C -0.146 4.146 5 C -0.159 4.159 6 C -0.153 4.153 7 C -0.152 4.152 8 C -0.110 4.110 9 H 0.108 0.892 10 C 0.328 3.672 11 O -0.438 6.438 12 N -0.375 5.375 13 C -0.023 4.023 14 C 0.015 3.985 15 C -0.556 4.556 16 H 0.081 0.919 17 C -0.135 4.135 18 N -0.523 5.523 19 Si 0.723 3.277 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.200 1.200 23 C -0.024 4.024 24 H 0.102 0.898 25 H 0.064 0.936 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.105 0.895 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.884 -0.226 -13.374 14.240 hybrid contribution 0.158 -0.719 0.773 1.067 sum -4.727 -0.945 -12.601 13.492 Atomic orbital electron populations 1.22187 0.94444 1.01387 1.03079 1.20212 0.96230 0.94942 0.92542 1.22111 0.99913 0.95743 1.03301 1.21626 1.00412 0.95298 0.97271 1.21596 1.01048 0.95698 0.97556 1.21510 1.00904 0.98658 0.94275 1.21585 1.01201 0.93651 0.98759 1.21240 1.01488 0.95618 0.92660 0.89234 1.20088 0.79715 0.84376 0.83065 1.90489 1.39765 1.27747 1.85831 1.50040 1.51450 1.31355 1.04610 1.23620 0.92810 0.90533 0.95360 1.20383 0.91934 0.93558 0.92582 1.20879 0.96878 1.32057 1.05774 0.91933 1.25021 0.95185 0.96105 0.97151 1.69946 1.00966 1.42660 1.38712 0.86603 0.77265 0.80197 0.83663 1.20074 1.21216 1.20037 1.23310 1.01056 0.99570 0.78433 0.89761 0.93643 0.93113 0.93720 0.93462 0.89545 0.92123 0.92046 0.92370 0.91718 0.91850 0.91927 0.90912 0.91496 0.90923 0.92310 0.91443 0.92586 0.92594 0.91072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 7.48 37.16 0.28 -1.88 16 2 C -0.04 -0.53 0.51 -154.51 -0.08 -0.61 16 3 C -0.15 -2.21 8.18 37.16 0.30 -1.90 16 4 C -0.11 -1.23 4.73 -26.73 -0.13 -1.36 16 5 C -0.12 -1.28 5.65 -26.73 -0.15 -1.43 16 6 C -0.12 -1.32 5.92 -26.73 -0.16 -1.48 16 7 C -0.11 -1.58 4.81 -26.73 -0.13 -1.71 16 8 C -0.09 -1.37 1.72 -91.77 -0.16 -1.53 16 9 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 10 C 0.54 10.23 6.82 -10.98 -0.07 10.16 16 11 O -0.56 -11.67 12.12 5.56 0.07 -11.60 16 12 N -0.64 -12.90 3.64 -185.09 -0.67 -13.58 16 13 C 0.10 2.06 6.29 -8.38 -0.05 2.01 16 14 C 0.03 0.81 3.79 -91.13 -0.35 0.46 16 15 C -0.52 -13.09 8.83 -34.44 -0.30 -13.39 16 16 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 17 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 18 N -0.89 -23.96 13.26 55.43 0.74 -23.22 16 19 Si 0.90 19.93 29.54 -169.99 -5.02 14.91 16 20 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 21 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 23 C 0.10 2.06 8.17 -8.52 -0.07 1.99 16 24 H 0.08 1.42 5.51 -51.93 -0.29 1.13 16 25 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.66 4.81 -51.93 -0.25 0.41 16 27 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.09 1.48 5.51 -51.93 -0.29 1.20 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.68 6.43 -51.93 -0.33 0.35 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 1.08 6.32 -51.93 -0.33 0.75 16 37 H 0.07 0.94 6.43 -51.93 -0.33 0.61 16 38 H 0.07 1.48 8.06 -51.93 -0.42 1.06 16 39 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 40 H 0.07 1.73 8.11 -51.93 -0.42 1.31 16 41 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 42 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.07 1.43 8.10 -51.93 -0.42 1.01 16 LS Contribution 323.21 15.07 4.87 4.87 Total: -1.00 -26.90 323.21 -8.46 -35.36 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -7.27 Total: 2.26 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: -1.16 Total: -8.99 kcal Atomic # 7 Polarization: -36.86 SS G_CDS: 0.06 Total: -36.80 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.07 Total: -11.60 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -26.90 -8.46 -35.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598022110.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.945 kcal (2) G-P(sol) polarization free energy of solvation -26.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds