Wall clock time and date at job start Mon Mar 30 2020 08:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.52992 * 109.47223 * 240.00442 * 2 1 3 5 5 C 1.53002 * 109.47106 * 299.99874 * 4 2 1 6 6 C 1.53002 * 109.47128 * 300.00123 * 5 4 2 7 7 C 1.52997 * 109.46978 * 59.99726 * 6 5 4 8 8 C 1.52997 * 109.47127 * 119.99936 * 2 1 3 9 9 H 1.09002 * 109.47153 * 180.02562 * 8 2 1 10 10 C 1.50701 * 109.47212 * 300.00129 * 8 2 1 11 11 O 1.21280 * 119.99781 * 0.02562 * 10 8 2 12 12 N 1.34780 * 119.99795 * 179.97438 * 10 8 2 13 13 C 1.47055 * 136.05788 * 359.63591 * 12 10 8 14 14 C 1.53757 * 87.88929 * 152.95713 * 13 12 10 15 15 C 1.50708 * 114.26588 * 139.78818 * 14 13 12 16 16 H 1.08001 * 119.99835 * 266.47967 * 15 14 13 17 17 C 1.37879 * 119.99889 * 86.47999 * 15 14 13 18 18 N 1.31516 * 119.99620 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99820 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47146 * 60.00248 * 19 17 15 21 21 H 1.48503 * 109.47074 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47194 * 299.99960 * 19 17 15 23 23 C 1.47065 * 136.05284 * 179.97438 * 12 10 8 24 24 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 25 25 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 26 26 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46716 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 29 29 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 30 30 H 1.09002 * 109.47103 * 179.97438 * 4 2 1 31 31 H 1.08996 * 109.47747 * 59.99547 * 4 2 1 32 32 H 1.08996 * 109.47407 * 180.02562 * 5 4 2 33 33 H 1.09002 * 109.47596 * 60.00070 * 5 4 2 34 34 H 1.09002 * 109.47097 * 299.99925 * 6 5 4 35 35 H 1.08998 * 109.47844 * 180.02562 * 6 5 4 36 36 H 1.09000 * 109.47140 * 180.02562 * 7 6 5 37 37 H 1.09002 * 109.47497 * 60.00450 * 7 6 5 38 38 H 1.09004 * 113.47070 * 267.68929 * 13 12 10 39 39 H 1.09003 * 113.47263 * 38.13096 * 13 12 10 40 40 H 1.08997 * 114.39868 * 272.67332 * 14 13 12 41 41 H 0.97003 * 119.99026 * 180.02562 * 18 17 15 42 42 H 1.08997 * 113.46988 * 321.86829 * 23 12 10 43 43 H 1.09002 * 113.46903 * 92.31116 * 23 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 1.5301 -2.1636 -1.2493 6 6 2.0401 -2.8850 -0.0001 7 6 1.5301 -2.1638 1.2491 8 6 2.0401 -0.7212 1.2492 9 1 3.1301 -0.7208 1.2495 10 6 1.5377 -0.0108 2.4797 11 8 0.8400 0.9750 2.3684 12 7 1.8629 -0.4716 3.7038 13 6 2.6480 -1.5943 4.2385 14 6 2.9084 -0.7414 5.4911 15 6 2.8493 -1.5094 6.7865 16 1 1.9265 -1.5547 7.3458 17 6 3.9733 -2.1541 7.2575 18 7 5.0971 -2.0985 6.5766 19 14 3.9003 -3.1053 8.8635 20 1 2.8870 -4.1853 8.7535 21 1 5.2304 -3.7023 9.1462 22 1 3.5255 -2.1853 9.9672 23 6 1.5838 -0.0764 5.0926 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1301 -0.7207 -1.2494 31 1 1.6767 -0.2074 -2.1392 32 1 1.8938 -2.6776 -2.1391 33 1 0.4401 -2.1638 -1.2493 34 1 3.1301 -2.8849 -0.0001 35 1 1.6772 -3.9128 -0.0003 36 1 1.8938 -2.6773 2.1391 37 1 0.4401 -2.1638 1.2492 38 1 2.0523 -2.4854 4.4363 39 1 3.5483 -1.8078 3.6622 40 1 3.7767 -0.0868 5.4176 41 1 5.8878 -2.5524 6.9079 42 1 1.5774 1.0030 5.2438 43 1 0.7072 -0.5670 5.5157 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598022110.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:17:56 Heat of formation + Delta-G solvation = -38.658867 kcal Electronic energy + Delta-G solvation = -21372.809227 eV Core-core repulsion = 18417.573746 eV Total energy + Delta-G solvation = -2955.235481 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.85658 -40.03423 -38.19922 -34.70241 -34.00065 -32.48717 -30.51964 -28.26096 -27.74599 -26.72887 -26.55057 -24.26268 -22.22702 -21.91561 -19.95751 -19.21864 -18.66959 -17.81718 -16.79429 -16.62883 -16.21949 -15.81808 -15.64623 -15.27164 -15.01789 -14.50167 -14.17269 -13.97195 -13.91633 -13.45850 -13.26727 -13.20063 -12.80989 -12.72459 -12.64388 -12.55133 -12.36815 -12.22231 -12.12309 -12.01484 -11.79519 -11.56874 -11.21960 -11.05780 -11.03696 -10.91814 -10.55585 -10.16409 -9.48011 -8.16215 -6.27509 1.49029 1.49706 1.57258 1.68435 2.07133 2.46852 3.13917 3.49110 3.63573 3.73248 4.04731 4.15489 4.25485 4.29909 4.36602 4.41493 4.42458 4.47358 4.54407 4.60242 4.70453 4.75286 4.83133 4.86076 4.87301 4.97364 4.98187 5.04968 5.09919 5.15509 5.19517 5.21704 5.23304 5.30863 5.42813 5.46494 5.58940 5.60350 5.70643 5.81316 6.23656 6.80719 6.99140 7.26656 7.42721 8.93598 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.030302 B = 0.004859 C = 0.004505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.800257 B = 5761.348789 C = 6214.288467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.039 4.039 3 C -0.152 4.152 4 C -0.104 4.104 5 C -0.118 4.118 6 C -0.112 4.112 7 C -0.111 4.111 8 C -0.084 4.084 9 H 0.088 0.912 10 C 0.531 3.469 11 O -0.576 6.576 12 N -0.645 5.645 13 C 0.119 3.881 14 C 0.022 3.978 15 C -0.529 4.529 16 H 0.066 0.934 17 C 0.023 3.977 18 N -0.919 5.919 19 Si 0.958 3.042 20 H -0.267 1.267 21 H -0.287 1.287 22 H -0.272 1.272 23 C 0.104 3.896 24 H 0.051 0.949 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.047 0.953 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.059 0.941 37 H 0.064 0.936 38 H 0.079 0.921 39 H 0.056 0.944 40 H 0.036 0.964 41 H 0.265 0.735 42 H 0.053 0.947 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.202 -2.047 -14.564 15.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.039 4.039 3 C -0.209 4.209 4 C -0.141 4.141 5 C -0.155 4.155 6 C -0.150 4.150 7 C -0.149 4.149 8 C -0.105 4.105 9 H 0.106 0.894 10 C 0.323 3.677 11 O -0.458 6.458 12 N -0.379 5.379 13 C -0.004 4.004 14 C 0.003 3.997 15 C -0.567 4.567 16 H 0.084 0.916 17 C -0.178 4.178 18 N -0.557 5.557 19 Si 0.783 3.217 20 H -0.192 1.192 21 H -0.212 1.212 22 H -0.197 1.197 23 C -0.018 4.018 24 H 0.070 0.930 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.066 0.934 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.097 0.903 39 H 0.075 0.925 40 H 0.055 0.945 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.430 -1.514 -14.841 15.875 hybrid contribution 0.294 -0.217 1.220 1.274 sum -5.136 -1.730 -13.621 14.659 Atomic orbital electron populations 1.22108 0.94559 1.01739 1.02209 1.20268 0.96110 0.94601 0.92946 1.22060 1.00109 0.96209 1.02513 1.21602 1.00670 0.95752 0.96115 1.21594 1.01191 0.94979 0.97782 1.21508 1.00998 0.99185 0.93287 1.21571 1.00980 0.92528 0.99802 1.21309 1.01240 0.96525 0.91446 0.89410 1.20877 0.79187 0.84132 0.83530 1.90501 1.40582 1.28604 1.86111 1.50072 1.51764 1.31220 1.04815 1.23296 0.92831 0.90377 0.93864 1.20271 0.91983 0.94091 0.93392 1.21179 0.97072 1.31944 1.06524 0.91624 1.25751 0.94832 0.97030 1.00171 1.70058 1.01552 1.43742 1.40313 0.85613 0.77246 0.78992 0.79836 1.19178 1.21221 1.19735 1.23171 1.00099 0.99313 0.79267 0.93004 0.92042 0.92132 0.93369 0.91673 0.92820 0.91733 0.90466 0.90198 0.91488 0.91702 0.90493 0.92272 0.91749 0.90320 0.92530 0.94538 0.92636 0.92872 0.90098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.95 7.48 71.98 0.54 -3.41 16 2 C -0.04 -1.01 0.51 -52.18 -0.03 -1.03 16 3 C -0.15 -4.23 8.18 71.98 0.59 -3.64 16 4 C -0.10 -2.03 4.73 30.59 0.14 -1.88 16 5 C -0.12 -2.05 5.65 30.60 0.17 -1.87 16 6 C -0.11 -2.25 5.92 30.59 0.18 -2.06 16 7 C -0.11 -2.92 4.81 30.59 0.15 -2.77 16 8 C -0.08 -2.53 1.72 -11.54 -0.02 -2.55 16 9 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 10 C 0.53 20.39 6.82 87.66 0.60 20.99 16 11 O -0.58 -24.58 12.12 -3.03 -0.04 -24.62 16 12 N -0.65 -26.29 3.64 -857.88 -3.12 -29.41 16 13 C 0.12 4.98 6.29 83.27 0.52 5.51 16 14 C 0.02 1.05 3.79 -11.12 -0.04 1.00 16 15 C -0.53 -26.93 8.83 25.60 0.23 -26.70 16 16 H 0.07 3.23 7.81 -2.91 -0.02 3.21 16 17 C 0.02 1.16 5.46 84.65 0.46 1.62 16 18 N -0.92 -50.29 13.26 21.45 0.28 -50.01 16 19 Si 0.96 40.67 29.54 68.60 2.03 42.70 16 20 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 21 H -0.29 -12.09 7.11 99.48 0.71 -11.38 16 22 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 23 C 0.10 4.42 8.17 83.17 0.68 5.10 16 24 H 0.05 1.73 5.51 -2.39 -0.01 1.72 16 25 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.06 1.46 4.81 -2.39 -0.01 1.45 16 27 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.05 1.86 5.51 -2.39 -0.01 1.85 16 30 H 0.06 1.23 8.14 -2.39 -0.02 1.22 16 31 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.07 1.16 6.43 -2.39 -0.02 1.14 16 34 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.06 1.71 6.32 -2.39 -0.02 1.69 16 37 H 0.06 1.71 6.43 -2.39 -0.02 1.70 16 38 H 0.08 3.20 8.06 -2.38 -0.02 3.18 16 39 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 40 H 0.04 1.95 8.11 -2.39 -0.02 1.93 16 41 H 0.26 13.82 8.31 -92.71 -0.77 13.05 16 42 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 43 H 0.08 3.26 8.10 -2.39 -0.02 3.24 16 Total: -1.00 -57.82 323.21 4.30 -53.52 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: 0.97 Total: 19.52 kcal Atomic # 6 Polarization: -15.88 SS G_CDS: 4.17 Total: -11.71 kcal Atomic # 7 Polarization: -76.58 SS G_CDS: -2.84 Total: -79.41 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: -0.04 Total: -24.62 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 2.03 Total: 42.70 kcal Total: -57.82 4.30 -53.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598022110.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.864 kcal (2) G-P(sol) polarization free energy of solvation -57.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds