Wall clock time and date at job start Mon Mar 30 2020 08:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.47335 * 2 1 4 4 C 1.52998 * 109.47184 * 239.99703 * 2 1 3 5 5 C 1.52997 * 109.47012 * 180.02562 * 4 2 1 6 6 C 1.53003 * 109.47076 * 60.00001 * 5 4 2 7 7 C 1.52998 * 109.47199 * 299.99885 * 6 5 4 8 8 C 1.52997 * 109.47012 * 60.00076 * 7 6 5 9 9 H 1.08999 * 109.47453 * 59.99822 * 8 7 6 10 10 C 1.50697 * 109.47221 * 179.97438 * 8 7 6 11 11 O 1.21276 * 120.00232 * 119.99575 * 10 8 7 12 12 N 1.34785 * 119.99956 * 299.99886 * 10 8 7 13 13 C 1.47580 * 134.49362 * 179.97438 * 12 10 8 14 14 C 1.53939 * 86.11527 * 155.35958 * 13 12 10 15 15 C 1.50706 * 113.74129 * 137.94933 * 14 13 12 16 16 H 1.07998 * 119.99503 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00434 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99826 * 359.72891 * 17 15 14 19 19 Si 1.86800 * 120.00406 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47364 * 179.72558 * 19 17 15 21 21 H 1.48508 * 109.46883 * 299.72681 * 19 17 15 22 22 H 1.48497 * 109.46870 * 59.72491 * 19 17 15 23 23 C 1.47578 * 134.48963 * 0.02562 * 12 10 8 24 24 H 1.09000 * 109.46756 * 300.00626 * 1 2 3 25 25 H 1.08998 * 109.46740 * 59.99959 * 1 2 3 26 26 H 1.08996 * 109.47038 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47066 * 179.97438 * 3 2 1 28 28 H 1.09006 * 109.46888 * 300.00289 * 3 2 1 29 29 H 1.08997 * 109.47017 * 59.99351 * 3 2 1 30 30 H 1.08999 * 109.47156 * 300.00468 * 4 2 1 31 31 H 1.08998 * 109.47007 * 60.00501 * 4 2 1 32 32 H 1.09002 * 109.47043 * 180.02562 * 5 4 2 33 33 H 1.08999 * 109.47453 * 300.00178 * 5 4 2 34 34 H 1.09005 * 109.46841 * 60.00494 * 6 5 4 35 35 H 1.09000 * 109.46995 * 179.97438 * 6 5 4 36 36 H 1.08998 * 109.46913 * 300.00208 * 7 6 5 37 37 H 1.08998 * 109.47007 * 179.97438 * 7 6 5 38 38 H 1.09000 * 113.76411 * 41.05837 * 13 12 10 39 39 H 1.09000 * 113.76708 * 269.66177 * 13 12 10 40 40 H 1.08994 * 113.74406 * 269.15545 * 14 13 12 41 41 H 0.97000 * 120.00236 * 0.27947 * 18 17 15 42 42 H 1.08993 * 113.77272 * 90.33369 * 23 12 10 43 43 H 1.09002 * 113.76944 * 318.93272 * 23 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5700 -0.7218 -1.2488 6 6 4.0795 -1.4434 0.0005 7 6 3.5695 -0.7221 1.2497 8 6 2.0395 -0.7216 1.2493 9 1 1.6758 -1.7491 1.2491 10 6 1.5371 -0.0117 2.4800 11 8 0.8403 0.9747 2.3692 12 7 1.8623 -0.4730 3.7040 13 6 1.5603 -0.0460 5.0841 14 6 1.8112 -1.5120 5.4810 15 6 2.6052 -1.6690 6.7523 16 1 2.9395 -0.7950 7.2915 17 6 2.9040 -2.9283 7.2275 18 7 2.4915 -3.9926 6.5742 19 14 3.8875 -3.1229 8.8036 20 1 4.0672 -4.5669 9.0999 21 1 5.2171 -2.4821 8.6396 22 1 3.1602 -2.4744 9.9241 23 6 2.6640 -1.6073 4.2024 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.6767 -1.7489 -1.2492 31 1 1.6768 -0.2075 -2.1392 32 1 3.9334 -1.2353 -2.1390 33 1 3.9338 0.3057 -1.2486 34 1 3.7158 -2.4710 0.0002 35 1 5.1695 -1.4442 0.0005 36 1 3.9332 0.3054 1.2498 37 1 3.9320 -1.2364 2.1397 38 1 0.5295 0.2778 5.2280 39 1 2.2885 0.6519 5.4973 40 1 0.9149 -2.1319 5.4605 41 1 1.9805 -3.8917 5.7559 42 1 3.7159 -1.3675 4.3569 43 1 2.5147 -2.5305 3.6424 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598022111.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:18:01 Heat of formation + Delta-G solvation = -32.460963 kcal Electronic energy + Delta-G solvation = -21444.726520 eV Core-core repulsion = 18489.759800 eV Total energy + Delta-G solvation = -2954.966720 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.56979 -38.55995 -36.76513 -33.19841 -32.74551 -31.30896 -28.77270 -27.14859 -26.40449 -25.32076 -24.57445 -23.13832 -21.12208 -20.60168 -18.72213 -17.96021 -17.09250 -16.37318 -15.54043 -15.01623 -14.69710 -14.64517 -14.25478 -13.84684 -13.81150 -13.35914 -12.95872 -12.94140 -12.44568 -11.98564 -11.81088 -11.71527 -11.57557 -11.46827 -11.35581 -11.17716 -11.05356 -10.90757 -10.76516 -10.66105 -10.46920 -10.18452 -10.07714 -9.93796 -9.64757 -9.05938 -8.57985 -8.50577 -7.90718 -6.52237 -4.25502 3.12213 3.37494 3.38327 3.52502 3.57390 4.42903 4.61773 4.68651 4.74171 5.10408 5.14312 5.17802 5.25301 5.36392 5.41284 5.47090 5.53865 5.66674 5.80533 5.87544 5.89709 5.95454 6.02648 6.03688 6.08147 6.10210 6.12345 6.16758 6.22522 6.25030 6.27292 6.34514 6.38508 6.44207 6.49588 6.66654 6.69052 6.76315 7.28114 7.98072 8.26353 8.44844 8.67488 8.75812 9.47404 10.87082 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.030120 B = 0.004940 C = 0.004563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.386373 B = 5667.000720 C = 6134.237696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.039 4.039 3 C -0.154 4.154 4 C -0.109 4.109 5 C -0.122 4.122 6 C -0.116 4.116 7 C -0.115 4.115 8 C -0.090 4.090 9 H 0.088 0.912 10 C 0.531 3.469 11 O -0.555 6.555 12 N -0.638 5.638 13 C 0.111 3.889 14 C 0.013 3.987 15 C -0.596 4.596 16 H 0.056 0.944 17 C 0.025 3.975 18 N -0.903 5.903 19 Si 1.068 2.932 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.287 1.287 23 C 0.097 3.903 24 H 0.085 0.915 25 H 0.047 0.953 26 H 0.043 0.957 27 H 0.050 0.950 28 H 0.045 0.955 29 H 0.083 0.917 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.060 0.940 39 H 0.074 0.926 40 H 0.053 0.947 41 H 0.270 0.730 42 H 0.078 0.922 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.915 4.646 -13.233 14.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.039 4.039 3 C -0.211 4.211 4 C -0.146 4.146 5 C -0.159 4.159 6 C -0.153 4.153 7 C -0.152 4.152 8 C -0.111 4.111 9 H 0.106 0.894 10 C 0.321 3.679 11 O -0.436 6.436 12 N -0.371 5.371 13 C -0.011 4.011 14 C -0.007 4.007 15 C -0.634 4.634 16 H 0.074 0.926 17 C -0.181 4.181 18 N -0.538 5.538 19 Si 0.896 3.104 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.213 1.213 23 C -0.025 4.025 24 H 0.104 0.896 25 H 0.066 0.934 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.102 0.898 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.092 0.908 40 H 0.071 0.929 41 H 0.080 0.920 42 H 0.096 0.904 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.140 4.089 -12.446 13.275 hybrid contribution -0.568 1.044 -1.153 1.656 sum 1.572 5.133 -13.600 14.621 Atomic orbital electron populations 1.22110 0.94400 1.01228 1.03324 1.20216 0.95699 0.95485 0.92521 1.22182 1.00269 0.95551 1.03091 1.21627 0.95409 1.00306 0.97266 1.21596 0.95859 1.00893 0.97558 1.21510 1.00167 0.99417 0.94243 1.21590 0.93314 1.01559 0.98781 1.21251 0.96807 1.00275 0.92762 0.89350 1.20264 0.80318 0.83839 0.83493 1.90491 1.39999 1.27184 1.85936 1.50435 1.50842 1.31264 1.04596 1.23314 0.99646 1.00004 0.78134 1.20654 0.95692 0.90980 0.93333 1.21817 1.37780 0.95157 1.08638 0.92598 1.25873 0.97081 0.92088 1.03010 1.70819 1.34056 1.31137 1.17769 0.83540 0.75879 0.76208 0.74765 1.20722 1.21303 1.21290 1.23824 0.96622 0.86712 0.95370 0.89591 0.93398 0.93752 0.93083 0.93573 0.89811 0.92142 0.91990 0.92307 0.91696 0.91874 0.91857 0.91436 0.90975 0.92124 0.90777 0.92864 0.91963 0.90377 0.92322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 8.18 37.16 0.30 -1.88 16 2 C -0.04 -0.53 0.51 -154.50 -0.08 -0.61 16 3 C -0.15 -2.14 7.48 37.16 0.28 -1.86 16 4 C -0.11 -1.22 4.73 -26.73 -0.13 -1.35 16 5 C -0.12 -1.27 5.65 -26.73 -0.15 -1.42 16 6 C -0.12 -1.31 5.92 -26.73 -0.16 -1.47 16 7 C -0.11 -1.58 4.81 -26.73 -0.13 -1.71 16 8 C -0.09 -1.37 1.67 -91.77 -0.15 -1.52 16 9 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 10 C 0.53 10.01 6.80 -10.98 -0.07 9.93 16 11 O -0.56 -11.53 12.08 5.56 0.07 -11.46 16 12 N -0.64 -12.72 3.57 -178.44 -0.64 -13.35 16 13 C 0.11 2.32 8.39 -2.98 -0.02 2.30 16 14 C 0.01 0.29 3.10 -90.83 -0.28 0.01 16 15 C -0.60 -15.29 8.77 -34.44 -0.30 -15.59 16 16 H 0.06 1.43 7.81 -52.49 -0.41 1.02 16 17 C 0.03 0.66 5.46 -17.82 -0.10 0.56 16 18 N -0.90 -25.24 13.65 55.43 0.76 -24.48 16 19 Si 1.07 23.42 29.90 -169.99 -5.08 18.33 16 20 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 21 H -0.29 -6.00 7.11 56.52 0.40 -5.60 16 22 H -0.29 -6.06 7.11 56.52 0.40 -5.66 16 23 C 0.10 1.99 6.40 -2.96 -0.02 1.97 16 24 H 0.09 1.46 5.51 -51.93 -0.29 1.17 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.66 4.81 -51.93 -0.25 0.41 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.08 1.40 5.51 -51.93 -0.29 1.11 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.68 6.43 -51.93 -0.33 0.34 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.95 6.43 -51.93 -0.33 0.61 16 37 H 0.07 1.07 6.13 -51.93 -0.32 0.75 16 38 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.07 1.52 8.09 -51.93 -0.42 1.10 16 40 H 0.05 1.32 7.60 -51.93 -0.39 0.93 16 41 H 0.27 7.44 7.04 -40.82 -0.29 7.16 16 42 H 0.08 1.60 7.92 -51.93 -0.41 1.19 16 43 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 321.24 15.07 4.84 4.84 Total: -1.00 -27.74 321.24 -8.25 -35.99 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -7.18 Total: 2.76 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: -1.01 Total: -12.62 kcal Atomic # 7 Polarization: -37.96 SS G_CDS: 0.12 Total: -37.84 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.07 Total: -11.46 kcal Atomic # 14 Polarization: 23.42 SS G_CDS: -5.08 Total: 18.33 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -27.74 -8.25 -35.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598022111.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.528 kcal (2) G-P(sol) polarization free energy of solvation -27.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds