Wall clock time and date at job start Mon Mar 30 2020 08:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.47335 * 2 1 4 4 C 1.52998 * 109.47184 * 239.99703 * 2 1 3 5 5 C 1.52997 * 109.47012 * 180.02562 * 4 2 1 6 6 C 1.53003 * 109.47076 * 60.00001 * 5 4 2 7 7 C 1.52998 * 109.47199 * 299.99885 * 6 5 4 8 8 C 1.52997 * 109.47012 * 60.00076 * 7 6 5 9 9 H 1.08999 * 109.47453 * 59.99822 * 8 7 6 10 10 C 1.50697 * 109.47221 * 179.97438 * 8 7 6 11 11 O 1.21276 * 120.00232 * 119.99575 * 10 8 7 12 12 N 1.34785 * 119.99956 * 299.99886 * 10 8 7 13 13 C 1.47580 * 134.49362 * 179.97438 * 12 10 8 14 14 C 1.53939 * 86.11527 * 155.35958 * 13 12 10 15 15 C 1.50706 * 113.74129 * 137.94933 * 14 13 12 16 16 H 1.07998 * 119.99503 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00434 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99826 * 359.72891 * 17 15 14 19 19 Si 1.86800 * 120.00406 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47364 * 179.72558 * 19 17 15 21 21 H 1.48508 * 109.46883 * 299.72681 * 19 17 15 22 22 H 1.48497 * 109.46870 * 59.72491 * 19 17 15 23 23 C 1.47578 * 134.48963 * 0.02562 * 12 10 8 24 24 H 1.09000 * 109.46756 * 300.00626 * 1 2 3 25 25 H 1.08998 * 109.46740 * 59.99959 * 1 2 3 26 26 H 1.08996 * 109.47038 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47066 * 179.97438 * 3 2 1 28 28 H 1.09006 * 109.46888 * 300.00289 * 3 2 1 29 29 H 1.08997 * 109.47017 * 59.99351 * 3 2 1 30 30 H 1.08999 * 109.47156 * 300.00468 * 4 2 1 31 31 H 1.08998 * 109.47007 * 60.00501 * 4 2 1 32 32 H 1.09002 * 109.47043 * 180.02562 * 5 4 2 33 33 H 1.08999 * 109.47453 * 300.00178 * 5 4 2 34 34 H 1.09005 * 109.46841 * 60.00494 * 6 5 4 35 35 H 1.09000 * 109.46995 * 179.97438 * 6 5 4 36 36 H 1.08998 * 109.46913 * 300.00208 * 7 6 5 37 37 H 1.08998 * 109.47007 * 179.97438 * 7 6 5 38 38 H 1.09000 * 113.76411 * 41.05837 * 13 12 10 39 39 H 1.09000 * 113.76708 * 269.66177 * 13 12 10 40 40 H 1.08994 * 113.74406 * 269.15545 * 14 13 12 41 41 H 0.97000 * 120.00236 * 0.27947 * 18 17 15 42 42 H 1.08993 * 113.77272 * 90.33369 * 23 12 10 43 43 H 1.09002 * 113.76944 * 318.93272 * 23 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5700 -0.7218 -1.2488 6 6 4.0795 -1.4434 0.0005 7 6 3.5695 -0.7221 1.2497 8 6 2.0395 -0.7216 1.2493 9 1 1.6758 -1.7491 1.2491 10 6 1.5371 -0.0117 2.4800 11 8 0.8403 0.9747 2.3692 12 7 1.8623 -0.4730 3.7040 13 6 1.5603 -0.0460 5.0841 14 6 1.8112 -1.5120 5.4810 15 6 2.6052 -1.6690 6.7523 16 1 2.9395 -0.7950 7.2915 17 6 2.9040 -2.9283 7.2275 18 7 2.4915 -3.9926 6.5742 19 14 3.8875 -3.1229 8.8036 20 1 4.0672 -4.5669 9.0999 21 1 5.2171 -2.4821 8.6396 22 1 3.1602 -2.4744 9.9241 23 6 2.6640 -1.6073 4.2024 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.6767 -1.7489 -1.2492 31 1 1.6768 -0.2075 -2.1392 32 1 3.9334 -1.2353 -2.1390 33 1 3.9338 0.3057 -1.2486 34 1 3.7158 -2.4710 0.0002 35 1 5.1695 -1.4442 0.0005 36 1 3.9332 0.3054 1.2498 37 1 3.9320 -1.2364 2.1397 38 1 0.5295 0.2778 5.2280 39 1 2.2885 0.6519 5.4973 40 1 0.9149 -2.1319 5.4605 41 1 1.9805 -3.8917 5.7559 42 1 3.7159 -1.3675 4.3569 43 1 2.5147 -2.5305 3.6424 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598022111.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:18:00 Heat of formation + Delta-G solvation = -46.400869 kcal Electronic energy + Delta-G solvation = -21445.330999 eV Core-core repulsion = 18489.759800 eV Total energy + Delta-G solvation = -2955.571199 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.91287 -40.04819 -38.26259 -34.91765 -34.03287 -32.50481 -30.34105 -28.28043 -27.62044 -27.03989 -26.34132 -24.31218 -22.39410 -22.03513 -20.08993 -19.30229 -18.94274 -17.91549 -16.86043 -16.66500 -16.01756 -15.80443 -15.59450 -15.33686 -15.22706 -14.69580 -14.18935 -14.04823 -13.91949 -13.56232 -13.34808 -13.20267 -12.94959 -12.83020 -12.60032 -12.45384 -12.36287 -12.22670 -12.06856 -11.90467 -11.83473 -11.58171 -11.43050 -11.09126 -10.96916 -10.76779 -10.54480 -10.16465 -9.57734 -8.61234 -6.34643 1.60467 1.61394 1.66628 1.86168 1.95281 2.61361 3.17538 3.39793 3.58098 3.68484 3.98621 4.09375 4.12524 4.20699 4.27924 4.34362 4.36263 4.42281 4.48628 4.50053 4.51544 4.68085 4.71142 4.73521 4.82498 4.83529 4.91368 4.97350 5.04688 5.11357 5.13984 5.17738 5.19654 5.27320 5.38273 5.39125 5.42517 5.55962 5.66596 6.00613 6.18968 6.58396 6.87112 7.18822 7.45192 8.79034 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.030120 B = 0.004940 C = 0.004563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.386373 B = 5667.000720 C = 6134.237696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.039 4.039 3 C -0.149 4.149 4 C -0.104 4.104 5 C -0.118 4.118 6 C -0.112 4.112 7 C -0.112 4.112 8 C -0.085 4.085 9 H 0.089 0.911 10 C 0.525 3.475 11 O -0.574 6.574 12 N -0.641 5.641 13 C 0.115 3.885 14 C 0.000 4.000 15 C -0.604 4.604 16 H 0.055 0.945 17 C -0.020 4.020 18 N -0.930 5.930 19 Si 1.112 2.888 20 H -0.287 1.287 21 H -0.269 1.269 22 H -0.275 1.275 23 C 0.118 3.882 24 H 0.053 0.947 25 H 0.064 0.936 26 H 0.048 0.952 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.050 0.950 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.079 0.921 40 H 0.030 0.970 41 H 0.260 0.740 42 H 0.080 0.920 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.183 4.730 -14.808 15.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.039 4.039 3 C -0.206 4.206 4 C -0.141 4.141 5 C -0.156 4.156 6 C -0.150 4.150 7 C -0.149 4.149 8 C -0.106 4.106 9 H 0.107 0.893 10 C 0.317 3.683 11 O -0.456 6.456 12 N -0.375 5.375 13 C -0.008 4.008 14 C -0.020 4.020 15 C -0.642 4.642 16 H 0.073 0.927 17 C -0.220 4.220 18 N -0.566 5.566 19 Si 0.935 3.065 20 H -0.213 1.213 21 H -0.194 1.194 22 H -0.200 1.200 23 C -0.005 4.005 24 H 0.071 0.929 25 H 0.083 0.917 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.097 0.903 40 H 0.048 0.952 41 H 0.070 0.930 42 H 0.098 0.902 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.401 4.198 -14.045 15.048 hybrid contribution -1.048 1.093 -0.672 1.657 sum 2.353 5.291 -14.717 15.815 Atomic orbital electron populations 1.22058 0.95042 1.01255 1.02521 1.20272 0.95207 0.95492 0.92944 1.22106 1.00789 0.95531 1.02203 1.21603 0.96096 1.00321 0.96105 1.21594 0.95035 1.01154 0.97785 1.21509 1.00980 0.99231 0.93244 1.21576 0.91964 1.01585 0.99820 1.21321 0.97923 0.99847 0.91495 0.89279 1.21036 0.79626 0.83736 0.83940 1.90504 1.40664 1.28197 1.86206 1.50432 1.51098 1.31192 1.04752 1.23177 0.99797 0.98667 0.79115 1.20612 0.95189 0.92171 0.93983 1.22105 1.37478 0.95133 1.09461 0.92714 1.27138 0.97548 0.91982 1.05289 1.70926 1.35602 1.31890 1.18136 0.82966 0.75624 0.76020 0.71919 1.21266 1.19408 1.20003 1.23485 0.96126 0.87138 0.93751 0.92855 0.91656 0.93301 0.92175 0.91986 0.93077 0.91666 0.90433 0.90141 0.91539 0.91615 0.90516 0.91825 0.92346 0.92191 0.90270 0.95235 0.93027 0.90229 0.91826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.14 8.18 71.98 0.59 -3.55 16 2 C -0.04 -0.99 0.51 -52.18 -0.03 -1.01 16 3 C -0.15 -3.93 7.48 71.98 0.54 -3.39 16 4 C -0.10 -1.99 4.73 30.59 0.14 -1.84 16 5 C -0.12 -2.02 5.65 30.59 0.17 -1.85 16 6 C -0.11 -2.21 5.92 30.59 0.18 -2.03 16 7 C -0.11 -2.91 4.81 30.59 0.15 -2.76 16 8 C -0.08 -2.50 1.67 -11.54 -0.02 -2.52 16 9 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 10 C 0.52 19.88 6.80 87.65 0.60 20.47 16 11 O -0.57 -24.23 12.08 -3.02 -0.04 -24.27 16 12 N -0.64 -25.80 3.57 -836.85 -2.98 -28.79 16 13 C 0.11 4.88 8.39 86.48 0.73 5.61 16 14 C 0.00 -0.01 3.10 -10.87 -0.03 -0.05 16 15 C -0.60 -31.20 8.77 25.60 0.22 -30.97 16 16 H 0.05 2.79 7.81 -2.91 -0.02 2.76 16 17 C -0.02 -1.04 5.46 84.65 0.46 -0.58 16 18 N -0.93 -52.57 13.65 21.45 0.29 -52.28 16 19 Si 1.11 46.67 29.90 68.60 2.05 48.72 16 20 H -0.29 -12.22 7.11 99.48 0.71 -11.51 16 21 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 22 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 23 C 0.12 4.85 6.40 86.49 0.55 5.41 16 24 H 0.05 1.82 5.51 -2.39 -0.01 1.81 16 25 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.06 1.45 4.81 -2.39 -0.01 1.43 16 28 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 29 H 0.05 1.70 5.51 -2.39 -0.01 1.68 16 30 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.07 1.14 6.43 -2.39 -0.02 1.13 16 34 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 35 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.06 1.70 6.43 -2.39 -0.02 1.68 16 37 H 0.06 1.67 6.13 -2.39 -0.01 1.66 16 38 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 39 H 0.08 3.27 8.09 -2.39 -0.02 3.25 16 40 H 0.03 1.53 7.60 -2.39 -0.02 1.51 16 41 H 0.26 14.72 7.04 -92.71 -0.65 14.06 16 42 H 0.08 3.26 7.92 -2.39 -0.02 3.24 16 43 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 Total: -1.00 -59.72 321.24 4.67 -55.05 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: 1.09 Total: 20.65 kcal Atomic # 6 Polarization: -23.34 SS G_CDS: 4.25 Total: -19.08 kcal Atomic # 7 Polarization: -78.38 SS G_CDS: -2.69 Total: -81.07 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: -0.04 Total: -24.27 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.05 Total: 48.72 kcal Total: -59.72 4.67 -55.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598022111.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.650 kcal (2) G-P(sol) polarization free energy of solvation -59.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds