Wall clock time and date at job start Mon Mar 30 2020 08:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47378 * 2 1 4 4 C 1.53001 * 109.46838 * 239.99820 * 2 1 3 5 5 C 1.53007 * 109.47349 * 300.00181 * 4 2 1 6 6 C 1.52999 * 109.47013 * 300.00155 * 5 4 2 7 7 C 1.53001 * 109.47189 * 59.99748 * 6 5 4 8 8 H 1.09002 * 109.47107 * 60.00115 * 7 6 5 9 9 C 1.50701 * 109.46782 * 179.97438 * 7 6 5 10 10 O 1.21280 * 120.00146 * 86.07940 * 9 7 6 11 11 N 1.34771 * 119.99943 * 266.06929 * 9 7 6 12 12 C 1.47066 * 136.05866 * 184.63982 * 11 9 7 13 13 C 1.53756 * 87.89301 * 152.96477 * 12 11 9 14 14 C 1.50700 * 114.08839 * 139.77540 * 13 12 11 15 15 H 1.08001 * 120.00442 * 266.56788 * 14 13 12 16 16 C 1.37878 * 119.99498 * 86.56869 * 14 13 12 17 17 N 1.31512 * 119.99924 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 120.00237 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.47103 * 90.00243 * 18 16 14 20 20 H 1.48506 * 109.47296 * 210.00253 * 18 16 14 21 21 H 1.48497 * 109.47343 * 330.00444 * 18 16 14 22 22 C 1.47068 * 136.06080 * 5.01735 * 11 9 7 23 23 C 1.52996 * 109.47054 * 120.00334 * 2 1 3 24 24 H 1.09006 * 109.47207 * 299.99913 * 1 2 3 25 25 H 1.09002 * 109.47332 * 59.99789 * 1 2 3 26 26 H 1.09001 * 109.47376 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47151 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.47061 * 300.00377 * 3 2 1 29 29 H 1.09000 * 109.47493 * 60.00163 * 3 2 1 30 30 H 1.09002 * 109.47107 * 180.02562 * 4 2 1 31 31 H 1.09002 * 109.46840 * 60.00089 * 4 2 1 32 32 H 1.08994 * 109.46897 * 179.97438 * 5 4 2 33 33 H 1.09002 * 109.47072 * 59.99911 * 5 4 2 34 34 H 1.09002 * 109.47002 * 299.99799 * 6 5 4 35 35 H 1.08993 * 109.47135 * 179.97438 * 6 5 4 36 36 H 1.09001 * 113.47150 * 267.70058 * 12 11 9 37 37 H 1.09000 * 113.47072 * 38.13566 * 12 11 9 38 38 H 1.08995 * 114.39684 * 272.68035 * 13 12 11 39 39 H 0.97001 * 120.00423 * 179.97438 * 17 16 14 40 40 H 1.09005 * 113.46071 * 321.85943 * 22 11 9 41 41 H 1.08992 * 113.47290 * 92.23849 * 22 11 9 42 42 H 1.09002 * 109.47240 * 299.99550 * 23 2 1 43 43 H 1.09000 * 109.47505 * 179.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5298 -2.1639 -1.2493 6 6 2.0398 -2.8851 0.0000 7 6 1.5299 -2.1638 1.2492 8 1 0.4399 -2.1637 1.2493 9 6 2.0317 -2.8746 2.4797 10 8 3.1233 -2.6039 2.9336 11 7 1.2674 -3.8110 3.0758 12 6 1.3568 -4.6346 4.2909 13 6 -0.1800 -4.6793 4.3053 14 6 -0.7528 -6.0216 4.6807 15 1 -1.0110 -6.7332 3.9104 16 6 -0.9473 -6.3413 6.0078 17 7 -1.4467 -7.5130 6.3355 18 14 -0.5000 -5.1109 7.3402 19 1 -1.6739 -4.2498 7.6329 20 1 -0.1004 -5.8382 8.5717 21 1 0.6296 -4.2665 6.8754 22 6 -0.0200 -4.4638 2.7939 23 6 2.0399 -0.7213 1.2492 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 3.1300 1.4424 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 3.1299 -0.7217 -1.2491 31 1 1.6765 -0.2074 -2.1392 32 1 1.8928 -2.6775 -2.1394 33 1 0.4398 -2.1638 -1.2492 34 1 3.1298 -2.8851 -0.0001 35 1 1.6761 -3.9125 0.0002 36 1 1.8178 -5.6079 4.1227 37 1 1.7852 -4.1064 5.1428 38 1 -0.6497 -3.8463 4.8283 39 1 -1.5831 -7.7381 7.2691 40 1 -0.7647 -3.7899 2.3703 41 1 0.0778 -5.3914 2.2302 42 1 1.6767 -0.2075 2.1392 43 1 3.1299 -0.7217 1.2490 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598032657.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:25:00 Heat of formation + Delta-G solvation = -31.730939 kcal Electronic energy + Delta-G solvation = -20948.315449 eV Core-core repulsion = 17993.380386 eV Total energy + Delta-G solvation = -2954.935063 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.33293 -38.92959 -37.05241 -33.38092 -32.63607 -31.16946 -29.42208 -27.46300 -26.47542 -25.47126 -25.27450 -22.96690 -21.60835 -19.96727 -18.48332 -18.22414 -17.17902 -16.51438 -15.70970 -15.06838 -14.82087 -14.61803 -14.44052 -14.10245 -13.65489 -13.56019 -13.03230 -12.94043 -12.60285 -12.28378 -12.17752 -11.99908 -11.87535 -11.70675 -11.56335 -11.42685 -11.08567 -11.02905 -10.84357 -10.65036 -10.44394 -10.21421 -10.10793 -10.06197 -9.92573 -9.28030 -9.00098 -8.65904 -8.02522 -6.21641 -4.24378 3.07077 3.22758 3.32198 3.35345 3.47460 4.32184 4.51081 4.54882 4.61134 4.92585 5.02010 5.03345 5.13273 5.23335 5.25408 5.39313 5.45200 5.53854 5.55625 5.61467 5.69975 5.73067 5.81653 5.86487 5.90160 5.91939 5.94755 6.07645 6.10315 6.13905 6.15748 6.22010 6.27082 6.31269 6.35231 6.45195 6.50847 6.59374 7.12905 7.54416 8.31417 8.42841 8.67733 8.80962 9.39953 10.90227 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.032455 B = 0.004483 C = 0.004379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.528636 B = 6244.376001 C = 6392.480857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.065 4.065 3 C -0.140 4.140 4 C -0.108 4.108 5 C -0.118 4.118 6 C -0.105 4.105 7 C -0.100 4.100 8 H 0.089 0.911 9 C 0.536 3.464 10 O -0.561 6.561 11 N -0.645 5.645 12 C 0.090 3.910 13 C -0.007 4.007 14 C -0.514 4.514 15 H 0.080 0.920 16 C 0.078 3.922 17 N -0.892 5.892 18 Si 0.873 3.127 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.259 1.259 22 C 0.108 3.892 23 C -0.089 4.089 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.062 0.938 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.267 0.733 40 H 0.060 0.940 41 H 0.082 0.918 42 H 0.062 0.938 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.556 13.703 -14.196 20.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.065 4.065 3 C -0.197 4.197 4 C -0.146 4.146 5 C -0.156 4.156 6 C -0.143 4.143 7 C -0.121 4.121 8 H 0.107 0.893 9 C 0.325 3.675 10 O -0.441 6.441 11 N -0.379 5.379 12 C -0.032 4.032 13 C -0.026 4.026 14 C -0.551 4.551 15 H 0.098 0.902 16 C -0.125 4.125 17 N -0.529 5.529 18 Si 0.700 3.300 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.184 1.184 22 C -0.014 4.014 23 C -0.127 4.127 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.099 0.901 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.100 0.900 42 H 0.081 0.919 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.207 13.879 -13.895 20.085 hybrid contribution 0.197 0.421 0.860 0.978 sum 4.403 14.300 -13.035 19.844 Atomic orbital electron populations 1.21998 0.94641 1.02197 1.01527 1.20542 0.95733 0.95044 0.95174 1.21844 1.01003 0.95322 1.01569 1.21609 1.00648 0.95350 0.96967 1.21565 1.01154 0.95522 0.97308 1.21425 1.01321 0.98845 0.92720 1.21256 1.01838 0.95878 0.93113 0.89281 1.20188 0.83604 0.79502 0.84184 1.90630 1.20841 1.66694 1.65945 1.50050 1.23390 1.37261 1.27176 1.23897 1.01087 0.93058 0.85170 1.20805 0.91282 0.98762 0.91772 1.20759 1.42547 0.98322 0.93518 0.90208 1.24988 0.93782 0.95087 0.98679 1.69887 1.43613 1.21058 1.18307 0.86923 0.79739 0.81793 0.81582 1.20122 1.21177 1.18368 1.23159 0.82558 0.95414 1.00289 1.21434 1.01567 0.92703 0.97015 0.92698 0.92842 0.91918 0.92671 0.92768 0.92648 0.91923 0.92060 0.91805 0.91436 0.91407 0.91576 0.90081 0.92461 0.92208 0.92344 0.92131 0.90018 0.91898 0.90819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 7.78 37.16 0.29 -1.09 16 2 C -0.06 -0.64 0.77 -154.51 -0.12 -0.76 16 3 C -0.14 -1.24 8.47 37.15 0.31 -0.93 16 4 C -0.11 -1.00 4.73 -26.73 -0.13 -1.12 16 5 C -0.12 -1.13 5.65 -26.73 -0.15 -1.28 16 6 C -0.11 -1.29 5.19 -26.73 -0.14 -1.43 16 7 C -0.10 -1.40 2.13 -91.77 -0.20 -1.59 16 8 H 0.09 1.18 5.92 -51.93 -0.31 0.87 16 9 C 0.54 10.07 7.09 -10.99 -0.08 10.00 16 10 O -0.56 -12.46 17.03 5.56 0.09 -12.36 16 11 N -0.65 -12.58 3.69 -185.08 -0.68 -13.26 16 12 C 0.09 1.94 7.62 -8.38 -0.06 1.87 16 13 C -0.01 -0.14 2.98 -91.12 -0.27 -0.42 16 14 C -0.51 -13.26 9.37 -34.44 -0.32 -13.58 16 15 H 0.08 2.20 8.06 -52.49 -0.42 1.78 16 16 C 0.08 2.11 5.47 -17.82 -0.10 2.02 16 17 N -0.89 -25.82 13.96 55.43 0.77 -25.04 16 18 Si 0.87 20.47 27.15 -169.99 -4.61 15.85 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 21 H -0.26 -5.90 5.72 56.52 0.32 -5.58 16 22 C 0.11 1.97 7.83 -8.52 -0.07 1.91 16 23 C -0.09 -1.15 3.66 -26.73 -0.10 -1.25 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.61 4.81 -51.93 -0.25 0.36 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.62 6.43 -51.93 -0.33 0.29 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.08 1.75 8.10 -51.93 -0.42 1.33 16 37 H 0.06 1.27 7.15 -51.93 -0.37 0.90 16 38 H 0.06 1.31 7.03 -51.93 -0.37 0.95 16 39 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 40 H 0.06 0.95 7.86 -51.93 -0.41 0.55 16 41 H 0.08 1.45 8.10 -51.93 -0.42 1.03 16 42 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.07 1.04 7.86 -51.93 -0.41 0.63 16 LS Contribution 329.68 15.07 4.97 4.97 Total: -1.00 -29.72 329.68 -8.16 -37.88 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -7.57 Total: -0.39 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: -1.12 Total: -7.65 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: 0.09 Total: -38.30 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: 0.09 Total: -12.36 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -4.61 Total: 15.85 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.72 -8.16 -37.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598032657.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.149 kcal (2) G-P(sol) polarization free energy of solvation -29.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds