Wall clock time and date at job start Mon Mar 30 2020 08:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47378 * 2 1 4 4 C 1.53001 * 109.46838 * 239.99820 * 2 1 3 5 5 C 1.53007 * 109.47349 * 300.00181 * 4 2 1 6 6 C 1.52999 * 109.47013 * 300.00155 * 5 4 2 7 7 C 1.53001 * 109.47189 * 59.99748 * 6 5 4 8 8 H 1.09002 * 109.47107 * 60.00115 * 7 6 5 9 9 C 1.50701 * 109.46782 * 179.97438 * 7 6 5 10 10 O 1.21280 * 120.00146 * 86.07940 * 9 7 6 11 11 N 1.34771 * 119.99943 * 266.06929 * 9 7 6 12 12 C 1.47066 * 136.05866 * 184.63982 * 11 9 7 13 13 C 1.53756 * 87.89301 * 152.96477 * 12 11 9 14 14 C 1.50700 * 114.08839 * 139.77540 * 13 12 11 15 15 H 1.08001 * 120.00442 * 266.56788 * 14 13 12 16 16 C 1.37878 * 119.99498 * 86.56869 * 14 13 12 17 17 N 1.31512 * 119.99924 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 120.00237 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.47103 * 90.00243 * 18 16 14 20 20 H 1.48506 * 109.47296 * 210.00253 * 18 16 14 21 21 H 1.48497 * 109.47343 * 330.00444 * 18 16 14 22 22 C 1.47068 * 136.06080 * 5.01735 * 11 9 7 23 23 C 1.52996 * 109.47054 * 120.00334 * 2 1 3 24 24 H 1.09006 * 109.47207 * 299.99913 * 1 2 3 25 25 H 1.09002 * 109.47332 * 59.99789 * 1 2 3 26 26 H 1.09001 * 109.47376 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47151 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.47061 * 300.00377 * 3 2 1 29 29 H 1.09000 * 109.47493 * 60.00163 * 3 2 1 30 30 H 1.09002 * 109.47107 * 180.02562 * 4 2 1 31 31 H 1.09002 * 109.46840 * 60.00089 * 4 2 1 32 32 H 1.08994 * 109.46897 * 179.97438 * 5 4 2 33 33 H 1.09002 * 109.47072 * 59.99911 * 5 4 2 34 34 H 1.09002 * 109.47002 * 299.99799 * 6 5 4 35 35 H 1.08993 * 109.47135 * 179.97438 * 6 5 4 36 36 H 1.09001 * 113.47150 * 267.70058 * 12 11 9 37 37 H 1.09000 * 113.47072 * 38.13566 * 12 11 9 38 38 H 1.08995 * 114.39684 * 272.68035 * 13 12 11 39 39 H 0.97001 * 120.00423 * 179.97438 * 17 16 14 40 40 H 1.09005 * 113.46071 * 321.85943 * 22 11 9 41 41 H 1.08992 * 113.47290 * 92.23849 * 22 11 9 42 42 H 1.09002 * 109.47240 * 299.99550 * 23 2 1 43 43 H 1.09000 * 109.47505 * 179.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5298 -2.1639 -1.2493 6 6 2.0398 -2.8851 0.0000 7 6 1.5299 -2.1638 1.2492 8 1 0.4399 -2.1637 1.2493 9 6 2.0317 -2.8746 2.4797 10 8 3.1233 -2.6039 2.9336 11 7 1.2674 -3.8110 3.0758 12 6 1.3568 -4.6346 4.2909 13 6 -0.1800 -4.6793 4.3053 14 6 -0.7528 -6.0216 4.6807 15 1 -1.0110 -6.7332 3.9104 16 6 -0.9473 -6.3413 6.0078 17 7 -1.4467 -7.5130 6.3355 18 14 -0.5000 -5.1109 7.3402 19 1 -1.6739 -4.2498 7.6329 20 1 -0.1004 -5.8382 8.5717 21 1 0.6296 -4.2665 6.8754 22 6 -0.0200 -4.4638 2.7939 23 6 2.0399 -0.7213 1.2492 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 3.1300 1.4424 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 3.1299 -0.7217 -1.2491 31 1 1.6765 -0.2074 -2.1392 32 1 1.8928 -2.6775 -2.1394 33 1 0.4398 -2.1638 -1.2492 34 1 3.1298 -2.8851 -0.0001 35 1 1.6761 -3.9125 0.0002 36 1 1.8178 -5.6079 4.1227 37 1 1.7852 -4.1064 5.1428 38 1 -0.6497 -3.8463 4.8283 39 1 -1.5831 -7.7381 7.2691 40 1 -0.7647 -3.7899 2.3703 41 1 0.0778 -5.3914 2.2302 42 1 1.6767 -0.2075 2.1392 43 1 3.1299 -0.7217 1.2490 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598032657.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:24:59 Heat of formation + Delta-G solvation = -48.527428 kcal Electronic energy + Delta-G solvation = -20949.043800 eV Core-core repulsion = 17993.380386 eV Total energy + Delta-G solvation = -2955.663414 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.62978 -40.19067 -38.57717 -34.70980 -34.27069 -32.23812 -31.04662 -28.16124 -27.46932 -27.10964 -26.87171 -24.16728 -22.56472 -21.58617 -19.77763 -19.35272 -19.08184 -17.94412 -17.00770 -16.72255 -15.91686 -15.82809 -15.59949 -15.24868 -15.08784 -14.83419 -14.53223 -14.04940 -13.95143 -13.53213 -13.48686 -13.28656 -12.95756 -12.79194 -12.70408 -12.53759 -12.36893 -12.30040 -11.95402 -11.91293 -11.89240 -11.69944 -11.40219 -11.21178 -11.05148 -10.95182 -10.69457 -10.49396 -9.65322 -8.30621 -6.36274 1.35719 1.40883 1.49594 1.58606 1.96341 2.34897 3.01048 3.41737 3.64881 3.73091 3.96615 4.03627 4.09957 4.17825 4.29525 4.33269 4.42356 4.45954 4.52517 4.56840 4.62301 4.68806 4.72461 4.79835 4.82177 4.86117 4.93806 4.99136 5.06387 5.08936 5.13760 5.20630 5.23123 5.25109 5.34168 5.38263 5.45323 5.50024 5.59941 5.66446 6.26451 6.70685 6.87804 7.13640 7.31548 8.84616 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.032455 B = 0.004483 C = 0.004379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.528636 B = 6244.376001 C = 6392.480857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.060 4.060 3 C -0.139 4.139 4 C -0.107 4.107 5 C -0.112 4.112 6 C -0.103 4.103 7 C -0.090 4.090 8 H 0.105 0.895 9 C 0.530 3.470 10 O -0.600 6.600 11 N -0.647 5.647 12 C 0.088 3.912 13 C -0.014 4.014 14 C -0.509 4.509 15 H 0.052 0.948 16 C 0.026 3.974 17 N -0.940 5.940 18 Si 0.931 3.069 19 H -0.265 1.265 20 H -0.289 1.289 21 H -0.251 1.251 22 C 0.123 3.877 23 C -0.086 4.086 24 H 0.049 0.951 25 H 0.070 0.930 26 H 0.061 0.939 27 H 0.051 0.949 28 H 0.071 0.929 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.053 0.947 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.047 0.953 38 H 0.066 0.934 39 H 0.268 0.732 40 H 0.095 0.905 41 H 0.087 0.913 42 H 0.050 0.950 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.011 15.808 -16.097 22.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.060 4.060 3 C -0.197 4.197 4 C -0.145 4.145 5 C -0.149 4.149 6 C -0.141 4.141 7 C -0.111 4.111 8 H 0.123 0.877 9 C 0.322 3.678 10 O -0.482 6.482 11 N -0.380 5.380 12 C -0.035 4.035 13 C -0.034 4.034 14 C -0.547 4.547 15 H 0.070 0.930 16 C -0.173 4.173 17 N -0.579 5.579 18 Si 0.756 3.244 19 H -0.190 1.190 20 H -0.215 1.215 21 H -0.174 1.174 22 C 0.001 3.999 23 C -0.125 4.125 24 H 0.069 0.931 25 H 0.089 0.911 26 H 0.080 0.920 27 H 0.070 0.930 28 H 0.090 0.910 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.065 0.935 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.114 0.886 41 H 0.105 0.895 42 H 0.069 0.931 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.652 16.000 -15.825 22.798 hybrid contribution 0.408 -0.273 1.418 1.500 sum 4.060 15.728 -14.407 21.712 Atomic orbital electron populations 1.22000 0.93756 1.02342 1.02224 1.20525 0.96356 0.95301 0.93861 1.21839 1.00830 0.94715 1.02278 1.21623 1.00415 0.95177 0.97253 1.21555 1.01779 0.95466 0.96127 1.21444 1.00507 0.99007 0.93174 1.21319 1.02583 0.95980 0.91242 0.87691 1.21153 0.82945 0.78783 0.84938 1.90608 1.22675 1.67683 1.67273 1.50091 1.23984 1.37318 1.26569 1.23697 1.00484 0.93218 0.86145 1.20748 0.91092 0.96704 0.94828 1.20964 1.41477 0.99450 0.92765 0.93026 1.25739 0.93993 0.96548 1.01035 1.70011 1.45904 1.23172 1.18804 0.85984 0.79956 0.79752 0.78730 1.19044 1.21502 1.17442 1.23066 0.82602 0.96435 0.97799 1.21427 1.00391 0.92246 0.98391 0.93137 0.91107 0.91994 0.93036 0.91022 0.92983 0.92471 0.89948 0.90330 0.90293 0.92821 0.91740 0.90780 0.93479 0.91626 0.92328 0.88632 0.89513 0.93073 0.92723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 7.78 71.98 0.56 -1.67 16 2 C -0.06 -1.04 0.77 -52.19 -0.04 -1.08 16 3 C -0.14 -2.14 8.47 71.98 0.61 -1.53 16 4 C -0.11 -1.62 4.73 30.60 0.14 -1.48 16 5 C -0.11 -1.77 5.65 30.60 0.17 -1.59 16 6 C -0.10 -2.32 5.19 30.59 0.16 -2.16 16 7 C -0.09 -2.37 2.13 -11.54 -0.02 -2.40 16 8 H 0.11 2.44 5.92 -2.39 -0.01 2.43 16 9 C 0.53 19.50 7.09 87.66 0.62 20.13 16 10 O -0.60 -26.79 17.03 -3.03 -0.05 -26.84 16 11 N -0.65 -24.43 3.69 -857.85 -3.16 -27.60 16 12 C 0.09 3.74 7.62 83.26 0.63 4.37 16 13 C -0.01 -0.60 2.98 -11.12 -0.03 -0.64 16 14 C -0.51 -26.38 9.37 25.60 0.24 -26.14 16 15 H 0.05 2.91 8.06 -2.91 -0.02 2.89 16 16 C 0.03 1.41 5.47 84.66 0.46 1.87 16 17 N -0.94 -55.49 13.96 21.45 0.30 -55.19 16 18 Si 0.93 42.22 27.15 68.60 1.86 44.08 16 19 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 20 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 21 H -0.25 -10.89 5.72 99.48 0.57 -10.32 16 22 C 0.12 4.22 7.83 83.17 0.65 4.87 16 23 C -0.09 -2.12 3.66 30.59 0.11 -2.01 16 24 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 25 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.06 0.96 4.81 -2.39 -0.01 0.94 16 27 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.08 1.11 6.43 -2.39 -0.02 1.10 16 34 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.07 3.22 8.10 -2.39 -0.02 3.20 16 37 H 0.05 2.08 7.15 -2.39 -0.02 2.06 16 38 H 0.07 2.75 7.03 -2.39 -0.02 2.73 16 39 H 0.27 14.89 8.31 -92.71 -0.77 14.11 16 40 H 0.10 2.66 7.86 -2.38 -0.02 2.64 16 41 H 0.09 2.92 8.10 -2.39 -0.02 2.90 16 42 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.05 1.53 7.86 -2.39 -0.02 1.52 16 Total: -1.00 -65.04 329.68 4.04 -61.00 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: 0.82 Total: 14.00 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: 4.27 Total: -9.46 kcal Atomic # 7 Polarization: -79.92 SS G_CDS: -2.86 Total: -82.79 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: -0.05 Total: -26.84 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 1.86 Total: 44.08 kcal Total: -65.04 4.04 -61.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598032657.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.468 kcal (2) G-P(sol) polarization free energy of solvation -65.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds