Wall clock time and date at job start Mon Mar 30 2020 08:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46740 * 2 1 4 4 C 1.53000 * 109.47366 * 119.99705 * 2 1 3 5 5 C 1.52997 * 109.47065 * 60.00234 * 4 2 1 6 6 C 1.52998 * 109.46901 * 59.99860 * 5 4 2 7 7 C 1.53000 * 109.47375 * 299.99950 * 6 5 4 8 8 H 1.09001 * 109.47216 * 299.99725 * 7 6 5 9 9 C 1.50704 * 109.47031 * 180.02562 * 7 6 5 10 10 O 1.21278 * 119.99793 * 268.22589 * 9 7 6 11 11 N 1.34778 * 119.99952 * 88.22227 * 9 7 6 12 12 C 1.47061 * 136.05806 * 5.06341 * 11 9 7 13 13 C 1.53244 * 88.08236 * 207.20034 * 12 11 9 14 14 C 1.50694 * 114.32389 * 220.46890 * 13 12 11 15 15 H 1.08008 * 120.00056 * 93.76144 * 14 13 12 16 16 C 1.37875 * 120.00133 * 273.75447 * 14 13 12 17 17 N 1.31512 * 120.00162 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99904 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47361 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46992 * 120.00584 * 18 16 14 21 21 H 1.48507 * 109.47217 * 239.99876 * 18 16 14 22 22 C 1.47064 * 136.05356 * 185.42386 * 11 9 7 23 23 C 1.52997 * 109.47065 * 60.00150 * 7 6 5 24 24 H 1.09003 * 109.47452 * 300.00013 * 1 2 3 25 25 H 1.08998 * 109.47394 * 60.00321 * 1 2 3 26 26 H 1.09009 * 109.46987 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47165 * 180.02562 * 3 2 1 28 28 H 1.09007 * 109.47020 * 299.99783 * 3 2 1 29 29 H 1.08998 * 109.47526 * 59.99515 * 3 2 1 30 30 H 1.09003 * 109.47065 * 300.00519 * 4 2 1 31 31 H 1.09001 * 109.47216 * 180.02562 * 4 2 1 32 32 H 1.09001 * 109.46997 * 300.00000 * 5 4 2 33 33 H 1.08998 * 109.47030 * 179.97438 * 5 4 2 34 34 H 1.09007 * 109.47025 * 179.97438 * 6 5 4 35 35 H 1.09001 * 109.47180 * 60.00253 * 6 5 4 36 36 H 1.08997 * 113.46942 * 321.92913 * 12 11 9 37 37 H 1.08994 * 113.47303 * 92.37266 * 12 11 9 38 38 H 1.08992 * 114.19661 * 87.72609 * 13 12 11 39 39 H 0.96995 * 120.00166 * 179.97438 * 17 16 14 40 40 H 1.08999 * 113.46938 * 267.62954 * 22 11 9 41 41 H 1.09004 * 113.47019 * 38.01156 * 22 11 9 42 42 H 1.09001 * 109.46997 * 60.00000 * 23 7 6 43 43 H 1.08998 * 109.47030 * 180.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5301 -2.1637 1.2493 6 6 2.0401 -2.8849 0.0001 7 6 1.5301 -2.1637 -1.2492 8 1 0.4401 -2.1638 -1.2492 9 6 2.0320 -2.8745 -2.4796 10 8 3.0759 -2.5329 -2.9938 11 7 1.3207 -3.8898 -3.0086 12 6 0.0165 -4.5175 -2.7482 13 6 0.5831 -5.8164 -3.3313 14 6 -0.3801 -6.5758 -4.2068 15 1 -0.3747 -6.4219 -5.2758 16 6 -1.2682 -7.4672 -3.6431 17 7 -1.2751 -7.6544 -2.3414 18 14 -2.4617 -8.4091 -4.7285 19 1 -2.2527 -8.0215 -6.1466 20 1 -2.2260 -9.8671 -4.5743 21 1 -3.8550 -8.0878 -4.3272 22 6 1.5101 -4.8614 -4.0962 23 6 2.0400 -0.7212 -1.2492 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 3.1299 1.4427 -0.0005 28 1 1.6765 1.9564 -0.8901 29 1 1.6765 1.9565 0.8899 30 1 1.6766 -0.2073 2.1392 31 1 3.1300 -0.7208 1.2495 32 1 0.4401 -2.1637 1.2493 33 1 1.8939 -2.6776 2.1391 34 1 1.6772 -3.9127 0.0003 35 1 3.1301 -2.8848 0.0000 36 1 -0.2267 -4.5892 -1.6881 37 1 -0.7951 -4.0939 -3.3396 38 1 1.0935 -6.4475 -2.6038 39 1 -1.9001 -8.2812 -1.9449 40 1 1.1004 -4.5302 -5.0504 41 1 2.5345 -5.2242 -4.1807 42 1 3.1300 -0.7212 -1.2493 43 1 1.6762 -0.2073 -2.1390 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598032658.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:25:04 Heat of formation + Delta-G solvation = -35.932544 kcal Electronic energy + Delta-G solvation = -20951.381173 eV Core-core repulsion = 17996.263914 eV Total energy + Delta-G solvation = -2955.117259 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.19314 -38.75239 -36.88820 -33.26805 -32.67167 -31.02667 -29.00293 -27.38108 -26.35454 -25.35146 -24.95690 -22.98069 -21.48979 -20.13993 -18.36986 -17.98520 -16.87894 -16.19164 -15.59208 -14.89680 -14.71141 -14.52161 -14.39377 -14.21828 -13.66482 -13.49567 -12.86483 -12.60616 -12.30365 -12.19910 -12.01795 -11.90294 -11.55318 -11.45840 -11.39710 -11.29007 -11.00579 -10.94546 -10.89944 -10.79324 -10.42197 -10.34777 -10.08936 -9.98307 -9.49804 -9.20034 -8.86795 -8.58870 -7.83077 -6.19483 -4.24835 3.20928 3.21959 3.31031 3.34610 3.61937 4.32505 4.62151 4.66430 4.73236 5.07223 5.11106 5.15051 5.24698 5.35959 5.37315 5.51376 5.57742 5.63660 5.66231 5.70931 5.82186 5.91472 5.98304 6.00979 6.05113 6.06222 6.19630 6.20982 6.24567 6.26869 6.30898 6.35952 6.41925 6.45626 6.56452 6.58865 6.69365 6.84893 7.54928 7.78576 8.17742 8.57656 8.79358 8.82695 9.42176 10.90351 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.030008 B = 0.004425 C = 0.004202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.850752 B = 6325.577988 C = 6662.294540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.065 4.065 3 C -0.139 4.139 4 C -0.108 4.108 5 C -0.118 4.118 6 C -0.106 4.106 7 C -0.098 4.098 8 H 0.088 0.912 9 C 0.535 3.465 10 O -0.568 6.568 11 N -0.644 5.644 12 C 0.100 3.900 13 C 0.034 3.966 14 C -0.516 4.516 15 H 0.064 0.936 16 C 0.069 3.931 17 N -0.886 5.886 18 Si 0.895 3.105 19 H -0.271 1.271 20 H -0.283 1.283 21 H -0.283 1.283 22 C 0.098 3.902 23 C -0.087 4.087 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.063 0.937 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.263 0.737 40 H 0.071 0.929 41 H 0.055 0.945 42 H 0.072 0.928 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.353 12.729 7.314 14.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.065 4.065 3 C -0.197 4.197 4 C -0.145 4.145 5 C -0.156 4.156 6 C -0.144 4.144 7 C -0.119 4.119 8 H 0.106 0.894 9 C 0.325 3.675 10 O -0.448 6.448 11 N -0.377 5.377 12 C -0.023 4.023 13 C 0.015 3.985 14 C -0.555 4.555 15 H 0.082 0.918 16 C -0.135 4.135 17 N -0.523 5.523 18 Si 0.722 3.278 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.209 1.209 22 C -0.024 4.024 23 C -0.125 4.125 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.082 0.918 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.089 0.911 41 H 0.074 0.926 42 H 0.091 0.909 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.924 12.980 7.278 15.166 hybrid contribution -0.833 -0.526 -0.531 1.119 sum 2.091 12.453 6.747 14.317 Atomic orbital electron populations 1.21999 0.94696 1.02288 1.01395 1.20550 0.95707 0.94980 0.95302 1.21844 1.00971 0.95386 1.01477 1.21606 1.00588 0.95463 0.96877 1.21565 1.01192 0.95360 0.97444 1.21428 1.01114 0.99253 0.92602 1.21225 1.01790 0.95636 0.93285 0.89352 1.20172 0.84018 0.78190 0.85114 1.90609 1.24988 1.65326 1.63908 1.50042 1.21646 1.31000 1.34992 1.23520 0.84392 0.93898 1.00470 1.20298 0.93002 0.90443 0.94787 1.20957 1.17641 1.23344 0.93524 0.91809 1.25020 0.97288 0.96153 0.95022 1.69957 1.36805 1.35639 1.09893 0.86493 0.80725 0.79724 0.80843 1.19557 1.20860 1.20892 1.23330 1.00273 0.87494 0.91307 1.21415 1.01485 0.92815 0.96817 0.92893 0.92796 0.91822 0.92694 0.92724 0.92815 0.92149 0.91970 0.91435 0.91806 0.91146 0.91591 0.92260 0.90892 0.91437 0.92702 0.91058 0.92622 0.90897 0.92026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 7.78 37.16 0.29 -1.25 16 2 C -0.07 -0.71 0.77 -154.51 -0.12 -0.83 16 3 C -0.14 -1.33 8.47 37.16 0.31 -1.02 16 4 C -0.11 -1.12 4.73 -26.73 -0.13 -1.25 16 5 C -0.12 -1.34 5.65 -26.73 -0.15 -1.49 16 6 C -0.11 -1.51 5.19 -26.73 -0.14 -1.64 16 7 C -0.10 -1.52 2.12 -91.77 -0.20 -1.72 16 8 H 0.09 1.33 6.22 -51.93 -0.32 1.01 16 9 C 0.54 10.67 7.15 -10.98 -0.08 10.59 16 10 O -0.57 -12.95 16.93 5.56 0.09 -12.85 16 11 N -0.64 -13.33 3.69 -185.39 -0.68 -14.02 16 12 C 0.10 2.10 7.82 -8.64 -0.07 2.03 16 13 C 0.03 0.80 3.77 -91.39 -0.34 0.45 16 14 C -0.52 -13.14 8.82 -34.44 -0.30 -13.44 16 15 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 16 C 0.07 1.77 5.46 -17.82 -0.10 1.68 16 17 N -0.89 -23.93 13.26 55.43 0.74 -23.19 16 18 Si 0.89 19.97 29.54 -169.99 -5.02 14.95 16 19 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 22 C 0.10 2.10 8.19 -8.51 -0.07 2.03 16 23 C -0.09 -1.21 3.59 -26.73 -0.10 -1.30 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.71 4.81 -51.92 -0.25 0.46 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.52 8.14 -51.92 -0.42 0.09 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.75 6.43 -51.93 -0.33 0.42 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 37 H 0.07 1.52 8.10 -51.93 -0.42 1.10 16 38 H 0.07 1.73 8.11 -51.93 -0.42 1.30 16 39 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 40 H 0.07 1.47 8.10 -51.93 -0.42 1.05 16 41 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.07 1.09 7.86 -51.93 -0.41 0.68 16 43 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 335.83 15.07 5.06 5.06 Total: -1.00 -28.12 335.83 -8.62 -36.74 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -7.62 Total: 0.49 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: -1.18 Total: -7.17 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: 0.05 Total: -37.21 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: 0.09 Total: -12.85 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.12 -8.62 -36.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598032658.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.806 kcal (2) G-P(sol) polarization free energy of solvation -28.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds