Wall clock time and date at job start Mon Mar 30 2020 08:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46740 * 2 1 4 4 C 1.53000 * 109.47366 * 119.99705 * 2 1 3 5 5 C 1.52997 * 109.47065 * 60.00234 * 4 2 1 6 6 C 1.52998 * 109.46901 * 59.99860 * 5 4 2 7 7 C 1.53000 * 109.47375 * 299.99950 * 6 5 4 8 8 H 1.09001 * 109.47216 * 299.99725 * 7 6 5 9 9 C 1.50704 * 109.47031 * 180.02562 * 7 6 5 10 10 O 1.21278 * 119.99793 * 268.22589 * 9 7 6 11 11 N 1.34778 * 119.99952 * 88.22227 * 9 7 6 12 12 C 1.47061 * 136.05806 * 5.06341 * 11 9 7 13 13 C 1.53244 * 88.08236 * 207.20034 * 12 11 9 14 14 C 1.50694 * 114.32389 * 220.46890 * 13 12 11 15 15 H 1.08008 * 120.00056 * 93.76144 * 14 13 12 16 16 C 1.37875 * 120.00133 * 273.75447 * 14 13 12 17 17 N 1.31512 * 120.00162 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99904 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47361 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46992 * 120.00584 * 18 16 14 21 21 H 1.48507 * 109.47217 * 239.99876 * 18 16 14 22 22 C 1.47064 * 136.05356 * 185.42386 * 11 9 7 23 23 C 1.52997 * 109.47065 * 60.00150 * 7 6 5 24 24 H 1.09003 * 109.47452 * 300.00013 * 1 2 3 25 25 H 1.08998 * 109.47394 * 60.00321 * 1 2 3 26 26 H 1.09009 * 109.46987 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47165 * 180.02562 * 3 2 1 28 28 H 1.09007 * 109.47020 * 299.99783 * 3 2 1 29 29 H 1.08998 * 109.47526 * 59.99515 * 3 2 1 30 30 H 1.09003 * 109.47065 * 300.00519 * 4 2 1 31 31 H 1.09001 * 109.47216 * 180.02562 * 4 2 1 32 32 H 1.09001 * 109.46997 * 300.00000 * 5 4 2 33 33 H 1.08998 * 109.47030 * 179.97438 * 5 4 2 34 34 H 1.09007 * 109.47025 * 179.97438 * 6 5 4 35 35 H 1.09001 * 109.47180 * 60.00253 * 6 5 4 36 36 H 1.08997 * 113.46942 * 321.92913 * 12 11 9 37 37 H 1.08994 * 113.47303 * 92.37266 * 12 11 9 38 38 H 1.08992 * 114.19661 * 87.72609 * 13 12 11 39 39 H 0.96995 * 120.00166 * 179.97438 * 17 16 14 40 40 H 1.08999 * 113.46938 * 267.62954 * 22 11 9 41 41 H 1.09004 * 113.47019 * 38.01156 * 22 11 9 42 42 H 1.09001 * 109.46997 * 60.00000 * 23 7 6 43 43 H 1.08998 * 109.47030 * 180.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5301 -2.1637 1.2493 6 6 2.0401 -2.8849 0.0001 7 6 1.5301 -2.1637 -1.2492 8 1 0.4401 -2.1638 -1.2492 9 6 2.0320 -2.8745 -2.4796 10 8 3.0759 -2.5329 -2.9938 11 7 1.3207 -3.8898 -3.0086 12 6 0.0165 -4.5175 -2.7482 13 6 0.5831 -5.8164 -3.3313 14 6 -0.3801 -6.5758 -4.2068 15 1 -0.3747 -6.4219 -5.2758 16 6 -1.2682 -7.4672 -3.6431 17 7 -1.2751 -7.6544 -2.3414 18 14 -2.4617 -8.4091 -4.7285 19 1 -2.2527 -8.0215 -6.1466 20 1 -2.2260 -9.8671 -4.5743 21 1 -3.8550 -8.0878 -4.3272 22 6 1.5101 -4.8614 -4.0962 23 6 2.0400 -0.7212 -1.2492 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 3.1299 1.4427 -0.0005 28 1 1.6765 1.9564 -0.8901 29 1 1.6765 1.9565 0.8899 30 1 1.6766 -0.2073 2.1392 31 1 3.1300 -0.7208 1.2495 32 1 0.4401 -2.1637 1.2493 33 1 1.8939 -2.6776 2.1391 34 1 1.6772 -3.9127 0.0003 35 1 3.1301 -2.8848 0.0000 36 1 -0.2267 -4.5892 -1.6881 37 1 -0.7951 -4.0939 -3.3396 38 1 1.0935 -6.4475 -2.6038 39 1 -1.9001 -8.2812 -1.9449 40 1 1.1004 -4.5302 -5.0504 41 1 2.5345 -5.2242 -4.1807 42 1 3.1300 -0.7212 -1.2493 43 1 1.6762 -0.2073 -2.1390 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598032658.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:25:03 Heat of formation + Delta-G solvation = -50.039708 kcal Electronic energy + Delta-G solvation = -20951.992905 eV Core-core repulsion = 17996.263914 eV Total energy + Delta-G solvation = -2955.728991 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.59399 -40.13705 -38.52797 -34.68067 -34.27759 -32.18943 -30.70794 -28.17326 -27.41854 -27.06742 -26.71550 -24.29737 -22.57810 -21.80663 -19.62279 -19.37072 -18.73010 -17.79590 -16.99832 -16.59120 -16.24603 -15.75310 -15.60377 -15.27839 -15.15031 -14.57078 -14.17551 -13.99048 -13.90137 -13.45644 -13.29567 -13.15227 -12.94168 -12.80307 -12.77003 -12.61033 -12.43771 -12.34083 -12.19264 -11.96290 -11.90296 -11.51233 -11.25133 -11.09939 -11.05433 -10.95570 -10.61586 -10.44087 -9.57757 -8.17109 -6.28327 1.45962 1.49614 1.59243 1.60879 2.00545 2.46208 3.13132 3.43226 3.64013 3.72643 4.00258 4.09509 4.15063 4.26902 4.32192 4.38971 4.41322 4.45620 4.52343 4.57585 4.67416 4.68528 4.79380 4.82040 4.87270 4.93591 4.97388 5.02913 5.05985 5.07946 5.13476 5.19420 5.22107 5.24506 5.36995 5.44301 5.49777 5.58339 5.64444 5.80729 6.22537 6.80202 6.90519 7.16151 7.41958 8.93123 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.030008 B = 0.004425 C = 0.004202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.850752 B = 6325.577988 C = 6662.294540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.061 4.061 3 C -0.137 4.137 4 C -0.105 4.105 5 C -0.113 4.113 6 C -0.103 4.103 7 C -0.091 4.091 8 H 0.096 0.904 9 C 0.529 3.471 10 O -0.599 6.599 11 N -0.646 5.646 12 C 0.116 3.884 13 C 0.024 3.976 14 C -0.529 4.529 15 H 0.065 0.935 16 C 0.024 3.976 17 N -0.917 5.917 18 Si 0.958 3.042 19 H -0.265 1.265 20 H -0.283 1.283 21 H -0.279 1.279 22 C 0.101 3.899 23 C -0.083 4.083 24 H 0.071 0.929 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.053 0.947 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.080 0.920 38 H 0.039 0.961 39 H 0.265 0.735 40 H 0.081 0.919 41 H 0.054 0.946 42 H 0.057 0.943 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.351 13.957 8.109 16.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.061 4.061 3 C -0.195 4.195 4 C -0.143 4.143 5 C -0.150 4.150 6 C -0.141 4.141 7 C -0.112 4.112 8 H 0.114 0.886 9 C 0.321 3.679 10 O -0.481 6.481 11 N -0.379 5.379 12 C -0.006 4.006 13 C 0.005 3.995 14 C -0.567 4.567 15 H 0.083 0.917 16 C -0.177 4.177 17 N -0.555 5.555 18 Si 0.784 3.216 19 H -0.189 1.189 20 H -0.209 1.209 21 H -0.204 1.204 22 C -0.021 4.021 23 C -0.121 4.121 24 H 0.090 0.910 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.090 0.910 30 H 0.102 0.898 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.098 0.902 38 H 0.058 0.942 39 H 0.074 0.926 40 H 0.099 0.901 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.923 14.218 8.072 16.462 hybrid contribution -0.448 -0.925 -0.805 1.306 sum 1.475 13.292 7.266 15.220 Atomic orbital electron populations 1.21996 0.94041 1.01997 1.02299 1.20542 0.96166 0.95565 0.93862 1.21825 1.00936 0.94335 1.02360 1.21614 1.00560 0.94703 0.97404 1.21552 1.01508 0.95874 0.96065 1.21421 1.00543 0.98647 0.93536 1.21280 1.02101 0.96292 0.91482 0.88591 1.21049 0.83375 0.77657 0.85834 1.90586 1.26325 1.66213 1.65014 1.50093 1.21611 1.31315 1.34864 1.23263 0.84482 0.92402 1.00484 1.20173 0.93532 0.91068 0.94755 1.21227 1.17918 1.23753 0.93815 0.91677 1.25734 0.98834 0.97001 0.96123 1.70055 1.37698 1.36412 1.11351 0.85504 0.78633 0.78147 0.79359 1.18942 1.20904 1.20440 1.23234 0.99788 0.87315 0.91783 1.21404 1.00493 0.91806 0.98376 0.91018 0.92940 0.92674 0.92815 0.92811 0.90985 0.89830 0.92126 0.90847 0.90457 0.92835 0.92486 0.92038 0.90233 0.94247 0.92589 0.90115 0.92784 0.92414 0.92840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 7.78 71.98 0.56 -2.13 16 2 C -0.06 -1.21 0.77 -52.18 -0.04 -1.25 16 3 C -0.14 -2.28 8.47 71.98 0.61 -1.67 16 4 C -0.11 -1.91 4.73 30.59 0.14 -1.76 16 5 C -0.11 -2.33 5.65 30.59 0.17 -2.15 16 6 C -0.10 -2.89 5.19 30.59 0.16 -2.74 16 7 C -0.09 -2.78 2.12 -11.54 -0.02 -2.80 16 8 H 0.10 2.81 6.22 -2.39 -0.01 2.80 16 9 C 0.53 21.28 7.15 87.66 0.63 21.91 16 10 O -0.60 -27.74 16.93 -3.02 -0.05 -27.79 16 11 N -0.65 -26.98 3.69 -858.85 -3.17 -30.15 16 12 C 0.12 4.90 7.82 83.09 0.65 5.55 16 13 C 0.02 1.15 3.77 -11.29 -0.04 1.10 16 14 C -0.53 -26.96 8.82 25.60 0.23 -26.73 16 15 H 0.07 3.23 7.81 -2.91 -0.02 3.21 16 16 C 0.02 1.21 5.46 84.65 0.46 1.67 16 17 N -0.92 -49.79 13.26 21.45 0.28 -49.50 16 18 Si 0.96 40.64 29.54 68.60 2.03 42.67 16 19 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 20 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 21 H -0.28 -11.57 7.11 99.48 0.71 -10.87 16 22 C 0.10 4.37 8.19 83.18 0.68 5.05 16 23 C -0.08 -2.23 3.59 30.59 0.11 -2.12 16 24 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.05 1.10 4.81 -2.38 -0.01 1.09 16 27 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 29 H 0.07 0.95 8.14 -2.39 -0.02 0.94 16 30 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.06 1.13 8.14 -2.39 -0.02 1.12 16 32 H 0.07 1.46 6.43 -2.39 -0.02 1.44 16 33 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 35 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 37 H 0.08 3.26 8.10 -2.39 -0.02 3.24 16 38 H 0.04 2.09 8.11 -2.39 -0.02 2.07 16 39 H 0.27 13.63 8.31 -92.71 -0.77 12.86 16 40 H 0.08 3.32 8.10 -2.39 -0.02 3.30 16 41 H 0.05 2.31 8.14 -2.38 -0.02 2.30 16 42 H 0.06 1.72 7.86 -2.39 -0.02 1.71 16 43 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -59.76 335.83 4.34 -55.42 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: 0.96 Total: 17.42 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: 4.29 Total: -8.06 kcal Atomic # 7 Polarization: -76.76 SS G_CDS: -2.89 Total: -79.65 kcal Atomic # 8 Polarization: -27.74 SS G_CDS: -0.05 Total: -27.79 kcal Atomic # 14 Polarization: 40.64 SS G_CDS: 2.03 Total: 42.67 kcal Total: -59.76 4.34 -55.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598032658.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.382 kcal (2) G-P(sol) polarization free energy of solvation -59.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds