Wall clock time and date at job start Mon Mar 30 2020 08:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47099 * 2 1 4 4 C 1.53005 * 109.46864 * 120.00204 * 2 1 3 5 5 C 1.52994 * 109.46787 * 179.97438 * 4 2 1 6 6 C 1.53003 * 109.47360 * 299.99977 * 5 4 2 7 7 C 1.50695 * 109.47214 * 180.02562 * 6 5 4 8 8 O 1.21278 * 119.99993 * 326.74829 * 7 6 5 9 9 N 1.34782 * 120.00252 * 146.74995 * 7 6 5 10 10 C 1.47582 * 134.48651 * 355.07561 * 9 7 6 11 11 C 1.53952 * 86.11303 * 204.63853 * 10 9 7 12 12 C 1.50697 * 113.74195 * 221.94009 * 11 10 9 13 13 H 1.08000 * 120.00143 * 358.07858 * 12 11 10 14 14 C 1.37875 * 119.99902 * 178.07980 * 12 11 10 15 15 N 1.31513 * 120.00081 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 120.00037 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47009 * 59.99643 * 16 14 12 18 18 H 1.48496 * 109.47280 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.46847 * 299.99546 * 16 14 12 20 20 C 1.47923 * 134.50590 * 175.08010 * 9 7 6 21 21 C 1.52997 * 109.47299 * 60.00073 * 6 5 4 22 22 C 1.53004 * 109.47241 * 300.00277 * 21 6 5 23 23 H 1.09002 * 109.47099 * 299.99892 * 1 2 3 24 24 H 1.09000 * 109.46963 * 59.99758 * 1 2 3 25 25 H 1.08998 * 109.47452 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46683 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.47411 * 299.99968 * 3 2 1 28 28 H 1.09004 * 109.47338 * 60.00543 * 3 2 1 29 29 H 1.08998 * 109.46983 * 59.99840 * 4 2 1 30 30 H 1.08992 * 109.47180 * 299.99737 * 4 2 1 31 31 H 1.09000 * 109.46886 * 180.02562 * 5 4 2 32 32 H 1.08998 * 109.47342 * 60.00241 * 5 4 2 33 33 H 1.09006 * 109.47013 * 300.00097 * 6 5 4 34 34 H 1.09001 * 113.77136 * 90.34306 * 10 9 7 35 35 H 1.09000 * 113.77529 * 318.93726 * 10 9 7 36 36 H 1.09007 * 113.73685 * 90.74137 * 11 10 9 37 37 H 0.97003 * 119.99792 * 180.02562 * 15 14 12 38 38 H 1.09004 * 113.86799 * 41.09259 * 20 9 7 39 39 H 1.09001 * 113.76832 * 269.60222 * 20 9 7 40 40 H 1.09006 * 109.47068 * 60.00058 * 21 6 5 41 41 H 1.08992 * 109.47326 * 180.02562 * 21 6 5 42 42 H 1.09006 * 109.46911 * 299.99877 * 22 21 6 43 43 H 1.09000 * 109.47272 * 179.97438 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5699 -0.7219 1.2489 6 6 4.0795 -1.4435 -0.0003 7 6 5.5864 -1.4445 -0.0003 8 8 6.1935 -0.5071 0.4724 9 7 6.2596 -2.4873 -0.5257 10 6 5.8674 -3.7958 -1.0842 11 6 7.2845 -4.2641 -0.7065 12 6 7.9412 -5.1201 -1.7587 13 1 7.4037 -5.3754 -2.6599 14 6 9.2283 -5.5773 -1.5707 15 7 9.8831 -5.2660 -0.4734 16 14 10.0427 -6.6378 -2.8752 17 1 10.1126 -5.8842 -4.1529 18 1 11.4155 -6.9955 -2.4363 19 1 9.2475 -7.8762 -3.0737 20 6 7.6882 -2.7801 -0.7741 21 6 3.5695 -0.7222 -1.2496 22 6 2.0395 -0.7216 -1.2493 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 3.1300 1.4424 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6768 1.9563 0.8900 29 1 1.6766 -1.7490 1.2492 30 1 1.6767 -0.2075 2.1392 31 1 3.9332 -1.2361 2.1387 32 1 3.9337 0.3056 1.2488 33 1 3.7157 -2.4710 -0.0001 34 1 5.6825 -3.7775 -2.1583 35 1 5.0762 -4.2936 -0.5236 36 1 7.3531 -4.6925 0.2935 37 1 10.7887 -5.5874 -0.3414 38 1 8.3495 -2.4674 0.0340 39 1 8.0369 -2.4640 -1.7573 40 1 3.9332 0.3054 -1.2498 41 1 3.9321 -1.2365 -2.1395 42 1 1.6758 -1.7492 -1.2491 43 1 1.6762 -0.2074 -2.1391 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598032840.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:12:33 Heat of formation + Delta-G solvation = -38.795121 kcal Electronic energy + Delta-G solvation = -20757.719786 eV Core-core repulsion = 17802.478396 eV Total energy + Delta-G solvation = -2955.241389 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.15117 -38.68573 -36.81728 -33.21911 -32.62459 -30.85748 -29.17055 -27.43385 -26.84390 -25.09498 -24.88727 -22.72727 -21.72114 -20.01368 -18.44696 -18.05203 -16.84127 -16.23231 -15.60853 -14.96780 -14.88251 -14.60179 -14.40162 -14.09972 -13.61285 -13.17245 -12.89426 -12.65421 -12.35079 -12.17945 -12.07593 -11.98960 -11.75501 -11.58601 -11.44786 -11.14687 -11.00593 -10.95912 -10.92040 -10.77147 -10.47909 -10.32868 -10.15671 -9.97117 -9.63443 -9.19603 -8.79941 -8.56413 -7.79126 -6.15394 -4.21991 3.23380 3.25958 3.31937 3.33100 3.64512 4.34324 4.56326 4.60434 4.65240 4.99873 5.08244 5.16884 5.17928 5.31185 5.35033 5.49185 5.50940 5.56820 5.57829 5.71681 5.80886 5.83029 5.85483 5.95607 5.97845 6.01860 6.05664 6.17707 6.20603 6.24612 6.25293 6.27704 6.39361 6.48303 6.56973 6.60054 6.83359 6.93485 7.55500 7.81345 8.17964 8.59117 8.80379 8.85098 9.44721 10.94143 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.041950 B = 0.003893 C = 0.003751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.298094 B = 7191.374077 C = 7461.906661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.067 4.067 3 C -0.147 4.147 4 C -0.106 4.106 5 C -0.104 4.104 6 C -0.099 4.099 7 C 0.527 3.473 8 O -0.564 6.564 9 N -0.640 5.640 10 C 0.095 3.905 11 C 0.034 3.966 12 C -0.522 4.522 13 H 0.062 0.938 14 C 0.068 3.932 15 N -0.885 5.885 16 Si 0.895 3.105 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.275 1.275 20 C 0.112 3.888 21 C -0.106 4.106 22 C -0.104 4.104 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.066 0.934 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.265 0.735 38 H 0.062 0.938 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.738 7.633 -0.053 18.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.067 4.067 3 C -0.204 4.204 4 C -0.144 4.144 5 C -0.142 4.142 6 C -0.120 4.120 7 C 0.316 3.684 8 O -0.444 6.444 9 N -0.374 5.374 10 C -0.027 4.027 11 C 0.015 3.985 12 C -0.561 4.561 13 H 0.081 0.919 14 C -0.136 4.136 15 N -0.521 5.521 16 Si 0.723 3.277 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.201 1.201 20 C -0.009 4.009 21 C -0.144 4.144 22 C -0.142 4.142 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.085 0.915 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.093 0.907 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -16.333 8.258 0.379 18.306 hybrid contribution 0.554 -0.611 -0.723 1.096 sum -15.779 7.647 -0.344 17.538 Atomic orbital electron populations 1.21861 0.94818 1.01585 1.01485 1.20558 0.94921 0.95744 0.95469 1.21991 1.02102 0.95089 1.01207 1.21600 0.95411 1.00312 0.97047 1.21427 0.94703 1.01774 0.96264 1.21211 0.92312 1.01254 0.97227 1.20283 0.89200 0.80849 0.78084 1.90617 1.70555 1.35301 1.47967 1.50619 1.11329 1.16632 1.58818 1.23541 1.00906 0.80558 0.97699 1.20489 0.88255 0.91185 0.98584 1.20922 0.99110 1.32044 1.03986 0.91944 1.25031 0.97353 0.95722 0.95482 1.69951 1.12038 1.44676 1.25481 0.86606 0.78495 0.80809 0.81811 1.20099 1.21233 1.20069 1.23665 0.80222 0.97525 0.99512 1.21453 0.95517 1.01100 0.96344 1.21580 0.94974 1.00488 0.97134 0.92817 0.92832 0.92746 0.91544 0.92998 0.92941 0.91982 0.91883 0.91941 0.90501 0.89849 0.90743 0.92166 0.91951 0.92559 0.91914 0.91022 0.91097 0.91671 0.91794 0.91829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 8.47 37.16 0.31 -0.83 16 2 C -0.07 -0.65 0.77 -154.50 -0.12 -0.77 16 3 C -0.15 -1.46 7.78 37.15 0.29 -1.17 16 4 C -0.11 -1.12 4.73 -26.73 -0.13 -1.24 16 5 C -0.10 -1.40 4.57 -26.73 -0.12 -1.53 16 6 C -0.10 -1.47 2.40 -91.77 -0.22 -1.69 16 7 C 0.53 10.46 7.07 -10.99 -0.08 10.39 16 8 O -0.56 -13.12 16.97 5.56 0.09 -13.03 16 9 N -0.64 -13.28 3.62 -178.13 -0.64 -13.93 16 10 C 0.10 1.83 7.89 -2.96 -0.02 1.81 16 11 C 0.03 0.80 3.60 -90.85 -0.33 0.48 16 12 C -0.52 -13.34 8.77 -34.44 -0.30 -13.64 16 13 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 14 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 15 N -0.88 -24.66 13.29 55.43 0.74 -23.93 16 16 Si 0.90 20.22 29.54 -169.99 -5.02 15.20 16 17 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 18 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 20 C 0.11 2.62 8.42 -2.78 -0.02 2.59 16 21 C -0.11 -1.38 4.91 -26.73 -0.13 -1.51 16 22 C -0.10 -1.07 4.73 -26.73 -0.13 -1.20 16 23 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.07 0.77 4.81 -51.93 -0.25 0.52 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.08 1.12 6.14 -51.93 -0.32 0.81 16 33 H 0.08 1.17 7.56 -51.93 -0.39 0.78 16 34 H 0.07 1.35 8.09 -51.93 -0.42 0.93 16 35 H 0.06 1.02 7.96 -51.93 -0.41 0.61 16 36 H 0.06 1.61 8.14 -51.92 -0.42 1.19 16 37 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 38 H 0.06 1.56 8.14 -51.93 -0.42 1.14 16 39 H 0.07 1.67 8.09 -51.93 -0.42 1.25 16 40 H 0.07 0.97 6.43 -51.93 -0.33 0.64 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 335.37 15.07 5.05 5.05 Total: -1.00 -28.89 335.37 -8.46 -37.35 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -7.59 Total: -0.11 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: -1.09 Total: -6.61 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: 0.09 Total: -37.86 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: 0.09 Total: -13.03 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -28.89 -8.46 -37.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598032840.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.444 kcal (2) G-P(sol) polarization free energy of solvation -28.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds