Wall clock time and date at job start Mon Mar 30 2020 08:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47099 * 2 1 4 4 C 1.53005 * 109.46864 * 120.00204 * 2 1 3 5 5 C 1.52994 * 109.46787 * 179.97438 * 4 2 1 6 6 C 1.53003 * 109.47360 * 299.99977 * 5 4 2 7 7 C 1.50695 * 109.47214 * 180.02562 * 6 5 4 8 8 O 1.21278 * 119.99993 * 326.74829 * 7 6 5 9 9 N 1.34782 * 120.00252 * 146.74995 * 7 6 5 10 10 C 1.47582 * 134.48651 * 355.07561 * 9 7 6 11 11 C 1.53952 * 86.11303 * 204.63853 * 10 9 7 12 12 C 1.50697 * 113.74195 * 221.94009 * 11 10 9 13 13 H 1.08000 * 120.00143 * 358.07858 * 12 11 10 14 14 C 1.37875 * 119.99902 * 178.07980 * 12 11 10 15 15 N 1.31513 * 120.00081 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 120.00037 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47009 * 59.99643 * 16 14 12 18 18 H 1.48496 * 109.47280 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.46847 * 299.99546 * 16 14 12 20 20 C 1.47923 * 134.50590 * 175.08010 * 9 7 6 21 21 C 1.52997 * 109.47299 * 60.00073 * 6 5 4 22 22 C 1.53004 * 109.47241 * 300.00277 * 21 6 5 23 23 H 1.09002 * 109.47099 * 299.99892 * 1 2 3 24 24 H 1.09000 * 109.46963 * 59.99758 * 1 2 3 25 25 H 1.08998 * 109.47452 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46683 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.47411 * 299.99968 * 3 2 1 28 28 H 1.09004 * 109.47338 * 60.00543 * 3 2 1 29 29 H 1.08998 * 109.46983 * 59.99840 * 4 2 1 30 30 H 1.08992 * 109.47180 * 299.99737 * 4 2 1 31 31 H 1.09000 * 109.46886 * 180.02562 * 5 4 2 32 32 H 1.08998 * 109.47342 * 60.00241 * 5 4 2 33 33 H 1.09006 * 109.47013 * 300.00097 * 6 5 4 34 34 H 1.09001 * 113.77136 * 90.34306 * 10 9 7 35 35 H 1.09000 * 113.77529 * 318.93726 * 10 9 7 36 36 H 1.09007 * 113.73685 * 90.74137 * 11 10 9 37 37 H 0.97003 * 119.99792 * 180.02562 * 15 14 12 38 38 H 1.09004 * 113.86799 * 41.09259 * 20 9 7 39 39 H 1.09001 * 113.76832 * 269.60222 * 20 9 7 40 40 H 1.09006 * 109.47068 * 60.00058 * 21 6 5 41 41 H 1.08992 * 109.47326 * 180.02562 * 21 6 5 42 42 H 1.09006 * 109.46911 * 299.99877 * 22 21 6 43 43 H 1.09000 * 109.47272 * 179.97438 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5699 -0.7219 1.2489 6 6 4.0795 -1.4435 -0.0003 7 6 5.5864 -1.4445 -0.0003 8 8 6.1935 -0.5071 0.4724 9 7 6.2596 -2.4873 -0.5257 10 6 5.8674 -3.7958 -1.0842 11 6 7.2845 -4.2641 -0.7065 12 6 7.9412 -5.1201 -1.7587 13 1 7.4037 -5.3754 -2.6599 14 6 9.2283 -5.5773 -1.5707 15 7 9.8831 -5.2660 -0.4734 16 14 10.0427 -6.6378 -2.8752 17 1 10.1126 -5.8842 -4.1529 18 1 11.4155 -6.9955 -2.4363 19 1 9.2475 -7.8762 -3.0737 20 6 7.6882 -2.7801 -0.7741 21 6 3.5695 -0.7222 -1.2496 22 6 2.0395 -0.7216 -1.2493 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 3.1300 1.4424 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6768 1.9563 0.8900 29 1 1.6766 -1.7490 1.2492 30 1 1.6767 -0.2075 2.1392 31 1 3.9332 -1.2361 2.1387 32 1 3.9337 0.3056 1.2488 33 1 3.7157 -2.4710 -0.0001 34 1 5.6825 -3.7775 -2.1583 35 1 5.0762 -4.2936 -0.5236 36 1 7.3531 -4.6925 0.2935 37 1 10.7887 -5.5874 -0.3414 38 1 8.3495 -2.4674 0.0340 39 1 8.0369 -2.4640 -1.7573 40 1 3.9332 0.3054 -1.2498 41 1 3.9321 -1.2365 -2.1395 42 1 1.6758 -1.7492 -1.2491 43 1 1.6762 -0.2074 -2.1391 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598032840.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:12:33 Heat of formation + Delta-G solvation = -54.108882 kcal Electronic energy + Delta-G solvation = -20758.383840 eV Core-core repulsion = 17802.478396 eV Total energy + Delta-G solvation = -2955.905444 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.47646 -40.02078 -38.46387 -34.67054 -34.23306 -31.81070 -30.88211 -28.15728 -28.07977 -26.84492 -26.52528 -23.66697 -23.00780 -21.62200 -19.69978 -19.30127 -18.71019 -17.86463 -16.96967 -16.59038 -16.12667 -15.96254 -15.71168 -15.13577 -14.86761 -14.38937 -14.16780 -13.98281 -13.76680 -13.35706 -13.32249 -13.20584 -13.10949 -12.79021 -12.75681 -12.58090 -12.51662 -12.27301 -12.20121 -11.89441 -11.86879 -11.54936 -11.24734 -11.12521 -11.07054 -10.87405 -10.60376 -10.40273 -9.53586 -8.16366 -6.29058 1.47991 1.48850 1.56544 1.65146 2.02694 2.45607 3.14242 3.46444 3.68478 3.72489 4.03910 4.07763 4.18109 4.24135 4.36341 4.43320 4.47987 4.53815 4.58018 4.59958 4.68137 4.71042 4.81290 4.88565 4.89457 4.93642 4.99403 5.04409 5.09207 5.09957 5.12835 5.15001 5.25048 5.26788 5.37531 5.52549 5.53119 5.58138 5.66426 5.80949 6.21131 6.80949 6.95255 7.20000 7.41906 8.93443 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.041950 B = 0.003893 C = 0.003751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.298094 B = 7191.374077 C = 7461.906661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.066 4.066 3 C -0.147 4.147 4 C -0.100 4.100 5 C -0.102 4.102 6 C -0.088 4.088 7 C 0.519 3.481 8 O -0.606 6.606 9 N -0.643 5.643 10 C 0.116 3.884 11 C 0.022 3.978 12 C -0.529 4.529 13 H 0.075 0.925 14 C 0.014 3.986 15 N -0.925 5.925 16 Si 0.961 3.039 17 H -0.268 1.268 18 H -0.291 1.291 19 H -0.264 1.264 20 C 0.111 3.889 21 C -0.103 4.103 22 C -0.098 4.098 23 H 0.058 0.942 24 H 0.060 0.940 25 H 0.061 0.939 26 H 0.042 0.958 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.050 0.950 32 H 0.059 0.941 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.032 0.968 37 H 0.263 0.737 38 H 0.031 0.969 39 H 0.069 0.931 40 H 0.056 0.944 41 H 0.063 0.937 42 H 0.076 0.924 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.658 7.014 -1.474 20.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.066 4.066 3 C -0.204 4.204 4 C -0.137 4.137 5 C -0.140 4.140 6 C -0.109 4.109 7 C 0.311 3.689 8 O -0.488 6.488 9 N -0.376 5.376 10 C -0.005 4.005 11 C 0.002 3.998 12 C -0.567 4.567 13 H 0.093 0.907 14 C -0.186 4.186 15 N -0.563 5.563 16 Si 0.786 3.214 17 H -0.193 1.193 18 H -0.217 1.217 19 H -0.189 1.189 20 C -0.012 4.012 21 C -0.141 4.141 22 C -0.136 4.136 23 H 0.077 0.923 24 H 0.079 0.921 25 H 0.080 0.920 26 H 0.061 0.939 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.118 0.882 34 H 0.112 0.888 35 H 0.109 0.891 36 H 0.050 0.950 37 H 0.072 0.928 38 H 0.050 0.950 39 H 0.088 0.912 40 H 0.075 0.925 41 H 0.082 0.918 42 H 0.095 0.905 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -19.292 7.628 -1.057 20.772 hybrid contribution 1.500 -0.362 -0.233 1.561 sum -17.792 7.266 -1.290 19.262 Atomic orbital electron populations 1.21811 0.92989 1.02310 1.02177 1.20573 0.96266 0.95099 0.94685 1.21981 1.00596 0.95795 1.01992 1.21583 0.92576 1.01416 0.98143 1.21418 0.97198 1.00332 0.95060 1.21263 0.87926 1.02761 0.98973 1.21312 0.91357 0.79685 0.76565 1.90591 1.71917 1.36811 1.49530 1.50650 1.10070 1.17727 1.59160 1.23467 0.98883 0.78945 0.99188 1.20417 0.91721 0.90721 0.96915 1.21326 0.99269 1.31590 1.04512 0.90725 1.25874 0.98205 0.97127 0.97351 1.70097 1.12286 1.46315 1.27626 0.85559 0.77173 0.79395 0.79232 1.19347 1.21743 1.18903 1.23421 0.81679 0.97858 0.98220 1.21455 0.97760 0.99887 0.94977 1.21576 0.92390 1.01579 0.98033 0.92289 0.92089 0.91995 0.93853 0.92087 0.92349 0.90767 0.90825 0.93145 0.92230 0.88162 0.88759 0.89100 0.94970 0.92839 0.94991 0.91231 0.92480 0.91832 0.90540 0.90422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 8.47 71.98 0.61 -1.08 16 2 C -0.07 -1.09 0.77 -52.18 -0.04 -1.13 16 3 C -0.15 -2.65 7.78 71.98 0.56 -2.09 16 4 C -0.10 -1.84 4.73 30.59 0.14 -1.70 16 5 C -0.10 -2.68 4.57 30.59 0.14 -2.54 16 6 C -0.09 -2.50 2.40 -11.54 -0.03 -2.53 16 7 C 0.52 20.78 7.07 87.65 0.62 21.40 16 8 O -0.61 -29.19 16.97 -3.02 -0.05 -29.24 16 9 N -0.64 -26.72 3.62 -835.86 -3.02 -29.75 16 10 C 0.12 4.27 7.89 86.49 0.68 4.96 16 11 C 0.02 1.03 3.60 -10.88 -0.04 0.99 16 12 C -0.53 -26.83 8.77 25.60 0.22 -26.61 16 13 H 0.07 3.53 7.81 -2.91 -0.02 3.51 16 14 C 0.01 0.75 5.46 84.65 0.46 1.21 16 15 N -0.92 -52.98 13.29 21.45 0.28 -52.69 16 16 Si 0.96 41.32 29.54 68.60 2.03 43.35 16 17 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 18 H -0.29 -12.65 7.11 99.48 0.71 -11.95 16 19 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 20 C 0.11 5.36 8.42 86.42 0.73 6.09 16 21 C -0.10 -2.48 4.91 30.59 0.15 -2.33 16 22 C -0.10 -1.70 4.73 30.60 0.14 -1.55 16 23 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 24 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.04 0.99 4.81 -2.39 -0.01 0.97 16 27 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 29 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.06 1.77 6.14 -2.39 -0.01 1.75 16 33 H 0.10 2.53 7.56 -2.38 -0.02 2.51 16 34 H 0.09 3.13 8.09 -2.39 -0.02 3.12 16 35 H 0.09 2.80 7.96 -2.39 -0.02 2.78 16 36 H 0.03 1.72 8.14 -2.38 -0.02 1.70 16 37 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 38 H 0.03 1.69 8.14 -2.38 -0.02 1.67 16 39 H 0.07 3.34 8.09 -2.39 -0.02 3.32 16 40 H 0.06 1.54 6.43 -2.38 -0.02 1.52 16 41 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 43 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -64.24 335.37 4.55 -59.68 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: 0.96 Total: 15.56 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: 4.36 Total: -6.91 kcal Atomic # 7 Polarization: -79.70 SS G_CDS: -2.74 Total: -82.44 kcal Atomic # 8 Polarization: -29.19 SS G_CDS: -0.05 Total: -29.24 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.35 kcal Total: -64.24 4.55 -59.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598032840.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.574 kcal (2) G-P(sol) polarization free energy of solvation -64.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds