Wall clock time and date at job start Mon Mar 30 2020 08:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47131 * 2 1 4 4 C 1.50694 * 109.47297 * 59.99685 * 3 2 1 5 5 O 1.21284 * 120.00100 * 0.02562 * 4 3 2 6 6 N 1.34770 * 120.00190 * 179.97438 * 4 3 2 7 7 C 1.47586 * 134.49328 * 179.97438 * 6 4 3 8 8 C 1.53950 * 86.11354 * 155.35990 * 7 6 4 9 9 C 1.50706 * 113.73627 * 137.95493 * 8 7 6 10 10 H 1.07995 * 120.00167 * 1.64697 * 9 8 7 11 11 C 1.37879 * 119.99394 * 181.92396 * 9 8 7 12 12 N 1.31514 * 120.00338 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99424 * 180.02562 * 11 9 8 14 14 H 1.48492 * 109.47487 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47233 * 120.00158 * 13 11 9 16 16 H 1.48508 * 109.46883 * 239.99963 * 13 11 9 17 17 C 1.47813 * 134.45830 * 359.86765 * 6 4 3 18 18 C 1.53004 * 109.46894 * 119.99599 * 2 1 3 19 19 C 1.52994 * 109.46878 * 60.00500 * 18 2 1 20 20 C 1.52999 * 109.47697 * 59.99916 * 19 18 2 21 21 C 1.53004 * 109.47025 * 299.99994 * 20 19 18 22 22 C 1.53000 * 109.47626 * 239.99873 * 2 1 3 23 23 H 1.09004 * 109.47047 * 60.00490 * 1 2 3 24 24 H 1.08999 * 109.47434 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47405 * 300.00672 * 1 2 3 26 26 H 1.09004 * 109.46755 * 299.99689 * 3 2 1 27 27 H 1.09003 * 109.46748 * 179.97438 * 3 2 1 28 28 H 1.09008 * 113.76654 * 41.06222 * 7 6 4 29 29 H 1.08991 * 113.77014 * 269.66271 * 7 6 4 30 30 H 1.09000 * 113.74485 * 269.15566 * 8 7 6 31 31 H 0.96996 * 119.99730 * 179.97438 * 12 11 9 32 32 H 1.09002 * 113.76703 * 90.37825 * 17 6 4 33 33 H 1.08998 * 113.83277 * 318.91803 * 17 6 4 34 34 H 1.09003 * 109.46831 * 180.02562 * 18 2 1 35 35 H 1.08993 * 109.47254 * 300.00346 * 18 2 1 36 36 H 1.09003 * 109.47091 * 299.99476 * 19 18 2 37 37 H 1.09009 * 109.47352 * 180.02562 * 19 18 2 38 38 H 1.08999 * 109.47447 * 180.02562 * 20 19 18 39 39 H 1.08993 * 109.47081 * 59.99742 * 20 19 18 40 40 H 1.09003 * 109.47115 * 300.00337 * 21 20 19 41 41 H 1.08993 * 109.47254 * 179.97438 * 21 20 19 42 42 H 1.09004 * 109.47204 * 59.99733 * 22 2 1 43 43 H 1.08993 * 109.47419 * 179.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.5376 2.1530 1.2304 5 8 0.8407 1.5635 2.0289 6 7 1.8636 3.4431 1.4439 7 6 1.5611 4.4246 2.5038 8 6 2.8596 5.1315 2.0744 9 6 2.7424 6.6329 2.0167 10 1 1.8147 7.1131 2.2908 11 6 3.8179 7.3930 1.6085 12 7 4.9457 6.8079 1.2690 13 14 3.6728 9.2540 1.5376 14 1 2.3106 9.6611 1.9661 15 1 4.6799 9.8639 2.4426 16 1 3.9126 9.7166 0.1469 17 6 2.6695 4.4423 0.7110 18 6 2.0399 -0.7212 1.2493 19 6 1.5300 -2.1636 1.2493 20 6 2.0400 -2.8850 0.0002 21 6 1.5301 -2.1638 -1.2492 22 6 2.0401 -0.7213 -1.2492 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.6766 1.9563 -0.8901 27 1 3.1300 1.4425 0.0005 28 1 1.5993 4.0094 3.5109 29 1 0.6603 5.0091 2.3171 30 1 3.7428 4.7948 2.6173 31 1 5.7021 7.3427 0.9814 32 1 2.0947 5.0320 -0.0031 33 1 3.5910 4.0411 0.2891 34 1 3.1299 -0.7208 1.2496 35 1 1.6765 -0.2074 2.1392 36 1 0.4399 -2.1637 1.2493 37 1 1.8929 -2.6774 2.1396 38 1 1.6763 -3.9125 -0.0001 39 1 3.1299 -2.8850 0.0002 40 1 0.4400 -2.1637 -1.2492 41 1 1.8938 -2.6774 -2.1391 42 1 1.6768 -0.2075 -2.1392 43 1 3.1300 -0.7208 -1.2494 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598033167.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:09:31 Heat of formation + Delta-G solvation = -32.546973 kcal Electronic energy + Delta-G solvation = -20824.954554 eV Core-core repulsion = 17869.984105 eV Total energy + Delta-G solvation = -2954.970449 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.15376 -38.64477 -36.77175 -32.95933 -32.67695 -30.66197 -29.63268 -27.30710 -26.52868 -25.09598 -24.72946 -22.57846 -21.38358 -20.08645 -18.31579 -17.92728 -16.82953 -16.24523 -15.46180 -15.11408 -14.91119 -14.62057 -14.36621 -14.20030 -13.60452 -13.41081 -12.85957 -12.72849 -12.18204 -12.09399 -11.72224 -11.61378 -11.56363 -11.50278 -11.37530 -11.17434 -10.96097 -10.85824 -10.76025 -10.66851 -10.42457 -10.10865 -10.04534 -9.88254 -9.45241 -9.23856 -8.73557 -8.56223 -7.78438 -6.19146 -4.24526 3.21823 3.24336 3.30982 3.34515 3.63980 4.32705 4.69844 4.76688 4.80431 5.07818 5.12482 5.20211 5.32484 5.41084 5.49655 5.52750 5.63003 5.69689 5.75972 5.84799 5.92210 6.04184 6.05668 6.07399 6.09461 6.17382 6.21502 6.25275 6.28420 6.36828 6.40366 6.46142 6.49151 6.60287 6.69082 6.73873 6.83428 6.85035 7.54972 7.78839 8.16592 8.58821 8.79110 8.84779 9.42468 10.90572 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.042974 B = 0.003850 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.397055 B = 7271.408496 C = 7477.009636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.038 4.038 3 C -0.127 4.127 4 C 0.526 3.474 5 O -0.559 6.559 6 N -0.641 5.641 7 C 0.102 3.898 8 C 0.033 3.967 9 C -0.519 4.519 10 H 0.063 0.937 11 C 0.067 3.933 12 N -0.887 5.887 13 Si 0.894 3.106 14 H -0.271 1.271 15 H -0.283 1.283 16 H -0.283 1.283 17 C 0.105 3.895 18 C -0.121 4.121 19 C -0.118 4.118 20 C -0.119 4.119 21 C -0.118 4.118 22 C -0.110 4.110 23 H 0.041 0.959 24 H 0.053 0.947 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.263 0.737 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.050 0.950 35 H 0.094 0.906 36 H 0.063 0.937 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.058 0.942 40 H 0.064 0.936 41 H 0.056 0.944 42 H 0.059 0.941 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.390 -13.933 -5.056 15.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.038 4.038 3 C -0.167 4.167 4 C 0.316 3.684 5 O -0.440 6.440 6 N -0.375 5.375 7 C -0.019 4.019 8 C 0.013 3.987 9 C -0.557 4.557 10 H 0.081 0.919 11 C -0.136 4.136 12 N -0.524 5.524 13 Si 0.722 3.278 14 H -0.196 1.196 15 H -0.209 1.209 16 H -0.209 1.209 17 C -0.017 4.017 18 C -0.158 4.158 19 C -0.155 4.155 20 C -0.157 4.157 21 C -0.156 4.156 22 C -0.148 4.148 23 H 0.060 0.940 24 H 0.072 0.928 25 H 0.103 0.897 26 H 0.104 0.896 27 H 0.105 0.895 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.112 0.888 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.608 -14.393 -4.747 15.841 hybrid contribution 0.161 1.079 -0.361 1.149 sum -4.446 -13.314 -5.108 14.938 Atomic orbital electron populations 1.22185 0.94440 1.01562 1.02932 1.20203 0.96206 0.92348 0.95083 1.21677 1.02188 0.95843 0.96990 1.20264 0.79821 0.81049 0.87272 1.90488 1.39848 1.65567 1.48110 1.50580 1.50990 1.08694 1.27227 1.23446 1.00777 0.86993 0.90733 1.20502 0.92277 0.94902 0.90975 1.21028 0.98702 0.90190 1.45791 0.91859 1.25019 0.95065 0.98857 0.94638 1.69957 1.02677 1.35697 1.44060 0.86497 0.78320 0.85242 0.77747 1.19590 1.20877 1.20920 1.23718 0.92461 0.86021 0.99548 1.21838 0.99504 0.94996 0.99455 1.21546 1.00953 0.96053 0.96968 1.21547 1.00548 0.98380 0.95179 1.21545 1.00989 0.95602 0.97444 1.21613 1.00434 0.95387 0.97323 0.93992 0.92831 0.89692 0.89627 0.89503 0.92195 0.90988 0.91928 0.92719 0.90802 0.91850 0.93089 0.88790 0.91842 0.92626 0.92669 0.92316 0.91757 0.92534 0.92195 0.92100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 7.48 37.16 0.28 -1.85 16 2 C -0.04 -0.51 0.51 -154.50 -0.08 -0.59 16 3 C -0.13 -1.91 4.52 -27.88 -0.13 -2.04 16 4 C 0.53 9.91 7.47 -10.99 -0.08 9.83 16 5 O -0.56 -11.51 12.08 5.55 0.07 -11.44 16 6 N -0.64 -12.92 3.61 -178.21 -0.64 -13.57 16 7 C 0.10 2.14 8.39 -2.96 -0.02 2.11 16 8 C 0.03 0.76 3.60 -90.84 -0.33 0.43 16 9 C -0.52 -13.16 8.77 -34.44 -0.30 -13.47 16 10 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 11 C 0.07 1.74 5.46 -17.82 -0.10 1.65 16 12 N -0.89 -23.93 13.29 55.43 0.74 -23.19 16 13 Si 0.89 19.98 29.54 -169.99 -5.02 14.96 16 14 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 15 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 16 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 17 C 0.10 2.19 8.18 -2.83 -0.02 2.17 16 18 C -0.12 -1.69 4.43 -26.73 -0.12 -1.81 16 19 C -0.12 -1.39 5.65 -26.73 -0.15 -1.54 16 20 C -0.12 -1.21 5.92 -26.73 -0.16 -1.37 16 21 C -0.12 -1.19 5.65 -26.73 -0.15 -1.34 16 22 C -0.11 -1.24 4.73 -26.73 -0.13 -1.36 16 23 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.05 0.66 4.81 -51.93 -0.25 0.41 16 25 H 0.08 1.41 5.51 -51.93 -0.29 1.12 16 26 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 27 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 28 H 0.06 1.22 8.14 -51.92 -0.42 0.80 16 29 H 0.07 1.46 8.09 -51.93 -0.42 1.04 16 30 H 0.06 1.59 8.14 -51.93 -0.42 1.17 16 31 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 32 H 0.07 1.53 8.09 -51.93 -0.42 1.11 16 33 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.09 1.59 5.51 -51.93 -0.29 1.30 16 36 H 0.06 0.76 6.43 -51.93 -0.33 0.43 16 37 H 0.05 0.62 8.14 -51.92 -0.42 0.20 16 38 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.65 6.43 -51.93 -0.33 0.32 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 327.45 15.07 4.93 4.93 Total: -1.00 -26.94 327.45 -8.79 -35.72 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -7.37 Total: 1.77 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: -1.49 Total: -9.18 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: 0.09 Total: -36.76 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: 0.07 Total: -11.44 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -26.94 -8.79 -35.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598033167.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.175 kcal (2) G-P(sol) polarization free energy of solvation -26.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds