Wall clock time and date at job start Mon Mar 30 2020 08:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47131 * 2 1 4 4 C 1.50694 * 109.47297 * 59.99685 * 3 2 1 5 5 O 1.21284 * 120.00100 * 0.02562 * 4 3 2 6 6 N 1.34770 * 120.00190 * 179.97438 * 4 3 2 7 7 C 1.47586 * 134.49328 * 179.97438 * 6 4 3 8 8 C 1.53950 * 86.11354 * 155.35990 * 7 6 4 9 9 C 1.50706 * 113.73627 * 137.95493 * 8 7 6 10 10 H 1.07995 * 120.00167 * 1.64697 * 9 8 7 11 11 C 1.37879 * 119.99394 * 181.92396 * 9 8 7 12 12 N 1.31514 * 120.00338 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99424 * 180.02562 * 11 9 8 14 14 H 1.48492 * 109.47487 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47233 * 120.00158 * 13 11 9 16 16 H 1.48508 * 109.46883 * 239.99963 * 13 11 9 17 17 C 1.47813 * 134.45830 * 359.86765 * 6 4 3 18 18 C 1.53004 * 109.46894 * 119.99599 * 2 1 3 19 19 C 1.52994 * 109.46878 * 60.00500 * 18 2 1 20 20 C 1.52999 * 109.47697 * 59.99916 * 19 18 2 21 21 C 1.53004 * 109.47025 * 299.99994 * 20 19 18 22 22 C 1.53000 * 109.47626 * 239.99873 * 2 1 3 23 23 H 1.09004 * 109.47047 * 60.00490 * 1 2 3 24 24 H 1.08999 * 109.47434 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47405 * 300.00672 * 1 2 3 26 26 H 1.09004 * 109.46755 * 299.99689 * 3 2 1 27 27 H 1.09003 * 109.46748 * 179.97438 * 3 2 1 28 28 H 1.09008 * 113.76654 * 41.06222 * 7 6 4 29 29 H 1.08991 * 113.77014 * 269.66271 * 7 6 4 30 30 H 1.09000 * 113.74485 * 269.15566 * 8 7 6 31 31 H 0.96996 * 119.99730 * 179.97438 * 12 11 9 32 32 H 1.09002 * 113.76703 * 90.37825 * 17 6 4 33 33 H 1.08998 * 113.83277 * 318.91803 * 17 6 4 34 34 H 1.09003 * 109.46831 * 180.02562 * 18 2 1 35 35 H 1.08993 * 109.47254 * 300.00346 * 18 2 1 36 36 H 1.09003 * 109.47091 * 299.99476 * 19 18 2 37 37 H 1.09009 * 109.47352 * 180.02562 * 19 18 2 38 38 H 1.08999 * 109.47447 * 180.02562 * 20 19 18 39 39 H 1.08993 * 109.47081 * 59.99742 * 20 19 18 40 40 H 1.09003 * 109.47115 * 300.00337 * 21 20 19 41 41 H 1.08993 * 109.47254 * 179.97438 * 21 20 19 42 42 H 1.09004 * 109.47204 * 59.99733 * 22 2 1 43 43 H 1.08993 * 109.47419 * 179.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.5376 2.1530 1.2304 5 8 0.8407 1.5635 2.0289 6 7 1.8636 3.4431 1.4439 7 6 1.5611 4.4246 2.5038 8 6 2.8596 5.1315 2.0744 9 6 2.7424 6.6329 2.0167 10 1 1.8147 7.1131 2.2908 11 6 3.8179 7.3930 1.6085 12 7 4.9457 6.8079 1.2690 13 14 3.6728 9.2540 1.5376 14 1 2.3106 9.6611 1.9661 15 1 4.6799 9.8639 2.4426 16 1 3.9126 9.7166 0.1469 17 6 2.6695 4.4423 0.7110 18 6 2.0399 -0.7212 1.2493 19 6 1.5300 -2.1636 1.2493 20 6 2.0400 -2.8850 0.0002 21 6 1.5301 -2.1638 -1.2492 22 6 2.0401 -0.7213 -1.2492 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.6766 1.9563 -0.8901 27 1 3.1300 1.4425 0.0005 28 1 1.5993 4.0094 3.5109 29 1 0.6603 5.0091 2.3171 30 1 3.7428 4.7948 2.6173 31 1 5.7021 7.3427 0.9814 32 1 2.0947 5.0320 -0.0031 33 1 3.5910 4.0411 0.2891 34 1 3.1299 -0.7208 1.2496 35 1 1.6765 -0.2074 2.1392 36 1 0.4399 -2.1637 1.2493 37 1 1.8929 -2.6774 2.1396 38 1 1.6763 -3.9125 -0.0001 39 1 3.1299 -2.8850 0.0002 40 1 0.4400 -2.1637 -1.2492 41 1 1.8938 -2.6774 -2.1391 42 1 1.6768 -0.2075 -2.1392 43 1 3.1300 -0.7208 -1.2494 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598033167.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:09:30 Heat of formation + Delta-G solvation = -45.295406 kcal Electronic energy + Delta-G solvation = -20825.507368 eV Core-core repulsion = 17869.984105 eV Total energy + Delta-G solvation = -2955.523263 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.48151 -40.03969 -38.28418 -34.61955 -34.02161 -31.59429 -31.23430 -28.72767 -27.63687 -26.83099 -26.41184 -23.51748 -22.57000 -21.62070 -19.64472 -19.20982 -18.69980 -17.80196 -16.81498 -16.52903 -16.32155 -16.18115 -15.52404 -15.39725 -14.89838 -14.64595 -14.21468 -13.92559 -13.73891 -13.32237 -13.29965 -13.14041 -12.89312 -12.73357 -12.63802 -12.50770 -12.44720 -12.29620 -12.20008 -11.81322 -11.77476 -11.35188 -11.15492 -11.07093 -10.99975 -10.82855 -10.58866 -10.15886 -9.44123 -8.16183 -6.27197 1.45603 1.49357 1.59621 1.73379 2.07744 2.46526 3.15080 3.57289 3.69842 3.81289 3.98035 4.20345 4.30453 4.37555 4.42348 4.45710 4.49646 4.55728 4.60379 4.66707 4.69006 4.70454 4.73170 4.84599 4.88709 4.94873 4.98515 5.05779 5.10373 5.19109 5.21402 5.24360 5.31227 5.38747 5.46054 5.50164 5.60360 5.65705 5.74955 5.82314 6.23494 6.80636 6.99428 7.29746 7.43121 8.93714 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.042974 B = 0.003850 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.397055 B = 7271.408496 C = 7477.009636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.036 4.036 3 C -0.122 4.122 4 C 0.520 3.480 5 O -0.576 6.576 6 N -0.646 5.646 7 C 0.108 3.892 8 C 0.021 3.979 9 C -0.531 4.531 10 H 0.064 0.936 11 C 0.022 3.978 12 N -0.918 5.918 13 Si 0.957 3.043 14 H -0.266 1.266 15 H -0.284 1.284 16 H -0.279 1.279 17 C 0.121 3.879 18 C -0.120 4.120 19 C -0.115 4.115 20 C -0.116 4.116 21 C -0.117 4.117 22 C -0.106 4.106 23 H 0.050 0.950 24 H 0.067 0.933 25 H 0.053 0.947 26 H 0.100 0.900 27 H 0.093 0.907 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.033 0.967 31 H 0.264 0.736 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.049 0.951 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.070 0.930 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.780 -14.706 -6.657 16.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.037 4.037 3 C -0.162 4.162 4 C 0.312 3.688 5 O -0.458 6.458 6 N -0.380 5.380 7 C -0.015 4.015 8 C 0.002 3.998 9 C -0.569 4.569 10 H 0.082 0.918 11 C -0.178 4.178 12 N -0.556 5.556 13 Si 0.783 3.217 14 H -0.190 1.190 15 H -0.210 1.210 16 H -0.205 1.205 17 C -0.002 4.002 18 C -0.158 4.158 19 C -0.153 4.153 20 C -0.153 4.153 21 C -0.154 4.154 22 C -0.144 4.144 23 H 0.069 0.931 24 H 0.086 0.914 25 H 0.071 0.929 26 H 0.119 0.881 27 H 0.111 0.889 28 H 0.077 0.923 29 H 0.098 0.902 30 H 0.052 0.948 31 H 0.073 0.927 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.012 -15.183 -6.347 17.202 hybrid contribution 0.262 1.276 0.220 1.321 sum -4.751 -13.907 -6.128 15.922 Atomic orbital electron populations 1.22103 0.94681 1.02128 1.01696 1.20230 0.95955 0.91398 0.96091 1.21756 1.02499 0.96627 0.95298 1.20995 0.79290 0.80336 0.88177 1.90506 1.40570 1.65660 1.49094 1.50586 1.51353 1.09182 1.26856 1.23306 0.99823 0.87193 0.91139 1.20418 0.92308 0.94485 0.92610 1.21310 0.98776 0.91345 1.45471 0.91825 1.25727 0.94762 1.02923 0.94409 1.70054 1.03310 1.37178 1.45044 0.85521 0.78296 0.80241 0.77683 1.19001 1.20957 1.20487 1.23433 0.92653 0.85861 0.98204 1.21767 0.99327 0.96320 0.98355 1.21520 1.00695 0.94748 0.98327 1.21533 1.00675 0.98973 0.94158 1.21554 1.01054 0.94753 0.98046 1.21591 1.00671 0.96031 0.96096 0.93112 0.91424 0.92860 0.88133 0.88856 0.92263 0.90225 0.94835 0.92653 0.90386 0.91719 0.93232 0.92248 0.92181 0.92405 0.91090 0.92113 0.91666 0.90697 0.91156 0.91728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.92 7.48 71.98 0.54 -3.38 16 2 C -0.04 -0.92 0.51 -52.18 -0.03 -0.95 16 3 C -0.12 -3.54 4.52 29.85 0.13 -3.40 16 4 C 0.52 19.57 7.47 87.66 0.65 20.22 16 5 O -0.58 -24.10 12.08 -3.04 -0.04 -24.14 16 6 N -0.65 -26.05 3.61 -836.11 -3.02 -29.07 16 7 C 0.11 4.54 8.39 86.49 0.73 5.26 16 8 C 0.02 1.00 3.60 -10.87 -0.04 0.96 16 9 C -0.53 -27.04 8.77 25.60 0.22 -26.82 16 10 H 0.06 3.17 7.81 -2.91 -0.02 3.14 16 11 C 0.02 1.13 5.46 84.66 0.46 1.60 16 12 N -0.92 -49.83 13.29 21.45 0.28 -49.55 16 13 Si 0.96 40.77 29.54 68.60 2.03 42.79 16 14 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 15 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 16 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 17 C 0.12 5.05 8.18 86.44 0.71 5.75 16 18 C -0.12 -3.31 4.43 30.59 0.14 -3.17 16 19 C -0.12 -2.57 5.65 30.59 0.17 -2.39 16 20 C -0.12 -2.04 5.92 30.60 0.18 -1.86 16 21 C -0.12 -1.96 5.65 30.60 0.17 -1.79 16 22 C -0.11 -2.09 4.73 30.60 0.14 -1.94 16 23 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.07 1.56 4.81 -2.39 -0.01 1.55 16 25 H 0.05 1.76 5.51 -2.39 -0.01 1.75 16 26 H 0.10 2.62 8.14 -2.39 -0.02 2.61 16 27 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 28 H 0.06 2.46 8.14 -2.38 -0.02 2.44 16 29 H 0.08 3.21 8.09 -2.39 -0.02 3.19 16 30 H 0.03 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.26 13.63 8.31 -92.71 -0.77 12.86 16 32 H 0.08 3.19 8.09 -2.39 -0.02 3.17 16 33 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 34 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.06 2.05 5.51 -2.39 -0.01 2.04 16 36 H 0.06 1.36 6.43 -2.39 -0.02 1.35 16 37 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 38 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.06 1.10 6.43 -2.39 -0.02 1.09 16 41 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -57.39 327.45 4.41 -52.98 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: 0.97 Total: 18.89 kcal Atomic # 6 Polarization: -16.10 SS G_CDS: 4.19 Total: -11.91 kcal Atomic # 7 Polarization: -75.88 SS G_CDS: -2.74 Total: -78.62 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: -0.04 Total: -24.14 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 2.03 Total: 42.79 kcal Total: -57.39 4.41 -52.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598033167.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.687 kcal (2) G-P(sol) polarization free energy of solvation -57.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds