Wall clock time and date at job start Mon Mar 30 2020 07:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00110 * 2 1 4 4 H 1.48494 * 109.47121 * 270.00239 * 3 2 1 5 5 H 1.48498 * 109.47038 * 30.00311 * 3 2 1 6 6 H 1.48504 * 109.46952 * 150.00143 * 3 2 1 7 7 C 1.37881 * 119.99760 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00099 * 0.02562 * 7 2 1 9 9 C 1.50705 * 119.99794 * 179.97438 * 7 2 1 10 10 C 1.53488 * 114.20432 * 179.97438 * 9 7 2 11 11 N 1.47062 * 87.98709 * 220.15331 * 10 9 7 12 12 C 1.34784 * 136.05762 * 207.08992 * 11 10 9 13 13 O 1.21279 * 119.99925 * 359.97438 * 12 11 10 14 14 C 1.50700 * 119.99961 * 179.97438 * 12 11 10 15 15 C 1.52992 * 109.47257 * 180.02562 * 14 12 11 16 16 C 1.54240 * 108.89691 * 297.88242 * 15 14 12 17 17 C 1.50474 * 108.52632 * 159.26382 * 16 15 14 18 18 C 1.54068 * 112.50094 * 94.15587 * 17 16 15 19 19 C 1.54075 * 112.81133 * 318.28170 * 18 17 16 20 20 C 1.50475 * 112.49235 * 318.28440 * 19 18 17 21 21 C 1.45540 * 108.89659 * 174.99653 * 15 14 12 22 22 C 1.47061 * 87.88485 * 27.34441 * 11 10 9 23 23 H 0.96996 * 120.00104 * 359.97438 * 1 2 3 24 24 H 1.08993 * 113.28502 * 313.06928 * 9 7 2 25 25 H 1.09008 * 113.46718 * 105.37211 * 10 9 7 26 26 H 1.09000 * 113.52489 * 334.94596 * 10 9 7 27 27 H 1.09004 * 109.46932 * 300.00223 * 14 12 11 28 28 H 1.08997 * 109.47392 * 59.99562 * 14 12 11 29 29 H 1.09001 * 108.87297 * 56.39129 * 15 14 12 30 30 H 1.08997 * 109.62836 * 278.97481 * 16 15 14 31 31 H 1.08998 * 109.62836 * 39.55170 * 16 15 14 32 32 H 1.09003 * 108.87949 * 333.36946 * 17 16 15 33 33 H 1.09009 * 108.87465 * 214.92929 * 17 16 15 34 34 H 1.08997 * 108.81227 * 197.42502 * 18 17 16 35 35 H 1.08997 * 108.72983 * 79.07699 * 18 17 16 36 36 H 1.08996 * 108.87374 * 197.51308 * 19 18 17 37 37 H 1.08995 * 108.80028 * 79.01003 * 19 18 17 38 38 H 1.08996 * 109.63338 * 334.44473 * 20 19 18 39 39 H 1.09006 * 109.62520 * 213.86413 * 20 19 18 40 40 H 1.08999 * 108.90070 * 303.44415 * 21 15 14 41 41 H 1.09001 * 108.89367 * 62.03476 * 21 15 14 42 42 H 1.09001 * 113.47097 * 87.44038 * 22 11 10 43 43 H 1.09001 * 113.46791 * 217.88377 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5116 -1.1941 -0.0011 10 6 4.1409 -2.5941 -0.0010 11 7 5.1446 -2.0862 0.9462 12 6 6.4190 -2.3884 1.2645 13 8 6.9895 -3.2916 0.6905 14 6 7.1349 -1.6038 2.3336 15 6 8.5566 -2.1448 2.4975 16 6 8.4816 -3.6159 2.9551 17 6 9.7896 -4.2849 2.6301 18 6 10.7727 -4.2651 3.8162 19 6 10.7839 -2.9160 4.5603 20 6 10.7433 -1.7406 3.6217 21 6 9.2741 -1.3050 3.4452 22 6 4.1439 -1.1078 1.3978 23 1 -0.4850 0.8400 0.0004 24 1 3.9421 -0.5103 -0.7325 25 1 4.5602 -2.8816 -0.9653 26 1 3.4936 -3.3620 0.4226 27 1 7.1772 -0.5531 2.0464 28 1 6.5977 -1.7011 3.2770 29 1 9.0635 -2.1019 1.5335 30 1 8.3067 -3.6565 4.0301 31 1 7.6713 -4.1217 2.4301 32 1 10.2474 -3.7724 1.7840 33 1 9.5960 -5.3204 2.3499 34 1 11.7766 -4.4697 3.4442 35 1 10.4912 -5.0508 4.5173 36 1 11.6892 -2.8539 5.1642 37 1 9.9170 -2.8712 5.2194 38 1 11.1583 -2.0286 2.6559 39 1 11.3214 -0.9171 4.0410 40 1 9.2516 -0.2744 3.0912 41 1 8.7736 -1.3568 4.4121 42 1 3.4968 -1.4830 2.1906 43 1 4.5658 -0.1288 1.6252 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598033725.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:27 Heat of formation + Delta-G solvation = -27.875547 kcal Electronic energy + Delta-G solvation = -20561.765275 eV Core-core repulsion = 17606.997394 eV Total energy + Delta-G solvation = -2954.767881 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.07725 -38.89679 -37.10092 -33.62577 -32.66456 -32.08791 -30.04694 -27.94501 -25.34021 -25.06539 -24.77224 -23.24265 -20.43581 -19.96852 -19.34099 -18.19231 -17.19703 -16.48398 -15.74368 -15.59766 -15.15248 -14.71307 -14.59056 -14.10502 -13.62284 -13.41264 -13.06190 -12.95153 -12.76833 -12.36382 -12.18355 -12.12964 -11.84952 -11.73999 -11.45708 -10.87223 -10.80663 -10.70398 -10.61681 -10.53779 -10.39287 -10.35098 -10.11940 -10.08958 -9.77956 -9.33543 -9.03933 -8.67515 -8.01489 -6.22837 -4.25513 3.09311 3.19292 3.28101 3.28727 3.48658 4.28880 4.50578 4.60770 4.74955 4.91671 5.01365 5.03262 5.06008 5.18697 5.28940 5.36414 5.40930 5.59099 5.65994 5.71603 5.74778 5.77516 5.90006 5.94512 5.99010 6.04450 6.09315 6.11911 6.14583 6.20569 6.24870 6.27159 6.33922 6.36788 6.41265 6.54060 6.57259 6.61384 7.13105 7.53235 8.31757 8.42446 8.67612 8.81027 9.38219 10.89244 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.037932 B = 0.003966 C = 0.003719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.976244 B = 7058.552647 C = 7526.895979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.076 3.924 3 Si 0.876 3.124 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.261 1.261 7 C -0.513 4.513 8 H 0.080 0.920 9 C -0.007 4.007 10 C 0.113 3.887 11 N -0.647 5.647 12 C 0.532 3.468 13 O -0.556 6.556 14 C -0.134 4.134 15 C -0.068 4.068 16 C -0.113 4.113 17 C -0.112 4.112 18 C -0.117 4.117 19 C -0.118 4.118 20 C -0.116 4.116 21 C -0.114 4.114 22 C 0.084 3.916 23 H 0.267 0.733 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.054 0.946 31 H 0.082 0.918 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.053 0.947 37 H 0.060 0.940 38 H 0.065 0.935 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.060 0.940 42 H 0.084 0.916 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.500 -2.154 8.594 20.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.127 4.127 3 Si 0.703 3.297 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.185 1.185 7 C -0.551 4.551 8 H 0.098 0.902 9 C -0.026 4.026 10 C -0.009 4.009 11 N -0.381 5.381 12 C 0.322 3.678 13 O -0.436 6.436 14 C -0.174 4.174 15 C -0.087 4.087 16 C -0.151 4.151 17 C -0.149 4.149 18 C -0.155 4.155 19 C -0.155 4.155 20 C -0.153 4.153 21 C -0.151 4.151 22 C -0.038 4.038 23 H 0.077 0.923 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.097 0.903 27 H 0.105 0.895 28 H 0.106 0.894 29 H 0.092 0.908 30 H 0.073 0.927 31 H 0.100 0.900 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.102 0.898 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 18.845 -2.560 8.356 20.773 hybrid contribution 0.232 1.010 0.127 1.044 sum 19.077 -1.550 8.483 20.935 Atomic orbital electron populations 1.69894 1.06382 1.27334 1.49275 1.25017 0.94676 0.99190 0.93824 0.86881 0.80480 0.83521 0.78806 1.20150 1.21233 1.18523 1.20783 0.87512 0.94887 1.51915 0.90240 1.20789 0.96871 0.92895 0.92082 1.23074 0.86689 0.99291 0.91864 1.50033 1.10068 1.37497 1.40520 1.20168 0.80377 0.83729 0.83524 1.90618 1.66217 1.32254 1.54489 1.21765 0.96733 1.00411 0.98496 1.19847 0.93575 0.95400 0.99899 1.21477 0.98456 0.94801 1.00326 1.21239 0.95473 1.00612 0.97625 1.21947 0.99126 0.96873 0.97547 1.21336 1.01443 0.94547 0.98203 1.21300 0.96342 0.97461 1.00201 1.20559 0.95462 0.99212 0.99869 1.23952 0.87178 0.90693 1.02025 0.92350 0.92244 0.92150 0.90317 0.89527 0.89410 0.90811 0.92692 0.89983 0.92203 0.92636 0.92731 0.92658 0.92782 0.92106 0.91586 0.92185 0.92330 0.92137 0.89783 0.92397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.61 13.96 55.43 0.77 -24.84 16 2 C 0.08 2.04 5.47 -17.82 -0.10 1.94 16 3 Si 0.88 19.77 27.15 -169.99 -4.62 15.16 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.26 -5.46 5.72 56.52 0.32 -5.13 16 7 C -0.51 -13.23 9.38 -34.44 -0.32 -13.56 16 8 H 0.08 2.23 8.06 -52.49 -0.42 1.80 16 9 C -0.01 -0.15 2.97 -91.12 -0.27 -0.42 16 10 C 0.11 2.26 8.17 -8.52 -0.07 2.19 16 11 N -0.65 -12.36 3.69 -185.09 -0.68 -13.04 16 12 C 0.53 9.61 7.57 -10.98 -0.08 9.52 16 13 O -0.56 -11.37 14.72 5.56 0.08 -11.29 16 14 C -0.13 -1.85 4.93 -27.89 -0.14 -1.99 16 15 C -0.07 -0.85 1.39 -93.49 -0.13 -0.98 16 16 C -0.11 -1.45 4.61 -27.34 -0.13 -1.57 16 17 C -0.11 -1.29 5.31 -27.44 -0.15 -1.43 16 18 C -0.12 -1.11 5.85 -25.61 -0.15 -1.26 16 19 C -0.12 -1.04 5.32 -27.43 -0.15 -1.19 16 20 C -0.12 -1.05 5.61 -27.34 -0.15 -1.20 16 21 C -0.11 -1.14 4.44 -29.60 -0.13 -1.28 16 22 C 0.08 1.62 7.43 -8.38 -0.06 1.56 16 23 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 24 H 0.06 1.30 7.03 -51.93 -0.37 0.94 16 25 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 26 H 0.08 1.56 8.10 -51.93 -0.42 1.14 16 27 H 0.09 1.12 8.07 -51.93 -0.42 0.70 16 28 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.07 1.02 7.31 -51.93 -0.38 0.65 16 30 H 0.05 0.65 6.97 -51.93 -0.36 0.28 16 31 H 0.08 1.29 5.61 -51.93 -0.29 1.00 16 32 H 0.06 0.72 6.63 -51.93 -0.34 0.38 16 33 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.55 6.62 -51.93 -0.34 0.21 16 38 H 0.07 0.63 6.98 -51.93 -0.36 0.27 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.56 8.06 -51.93 -0.42 0.14 16 41 H 0.06 0.59 7.46 -51.93 -0.39 0.20 16 42 H 0.08 1.60 8.10 -51.93 -0.42 1.18 16 43 H 0.06 1.05 7.15 -51.93 -0.37 0.68 16 LS Contribution 325.37 15.07 4.90 4.90 Total: -1.00 -28.53 325.37 -9.05 -37.58 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -7.48 Total: 1.19 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: -2.03 Total: -9.66 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: 0.09 Total: -37.88 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: 0.08 Total: -11.29 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -4.62 Total: 15.16 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.53 -9.05 -37.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598033725.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.703 kcal (2) G-P(sol) polarization free energy of solvation -28.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds