Wall clock time and date at job start Mon Mar 30 2020 07:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00110 * 2 1 4 4 H 1.48494 * 109.47121 * 270.00239 * 3 2 1 5 5 H 1.48498 * 109.47038 * 30.00311 * 3 2 1 6 6 H 1.48504 * 109.46952 * 150.00143 * 3 2 1 7 7 C 1.37881 * 119.99760 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00099 * 0.02562 * 7 2 1 9 9 C 1.50705 * 119.99794 * 179.97438 * 7 2 1 10 10 C 1.53488 * 114.20432 * 179.97438 * 9 7 2 11 11 N 1.47062 * 87.98709 * 220.15331 * 10 9 7 12 12 C 1.34784 * 136.05762 * 207.08992 * 11 10 9 13 13 O 1.21279 * 119.99925 * 359.97438 * 12 11 10 14 14 C 1.50700 * 119.99961 * 179.97438 * 12 11 10 15 15 C 1.52992 * 109.47257 * 180.02562 * 14 12 11 16 16 C 1.54240 * 108.89691 * 297.88242 * 15 14 12 17 17 C 1.50474 * 108.52632 * 159.26382 * 16 15 14 18 18 C 1.54068 * 112.50094 * 94.15587 * 17 16 15 19 19 C 1.54075 * 112.81133 * 318.28170 * 18 17 16 20 20 C 1.50475 * 112.49235 * 318.28440 * 19 18 17 21 21 C 1.45540 * 108.89659 * 174.99653 * 15 14 12 22 22 C 1.47061 * 87.88485 * 27.34441 * 11 10 9 23 23 H 0.96996 * 120.00104 * 359.97438 * 1 2 3 24 24 H 1.08993 * 113.28502 * 313.06928 * 9 7 2 25 25 H 1.09008 * 113.46718 * 105.37211 * 10 9 7 26 26 H 1.09000 * 113.52489 * 334.94596 * 10 9 7 27 27 H 1.09004 * 109.46932 * 300.00223 * 14 12 11 28 28 H 1.08997 * 109.47392 * 59.99562 * 14 12 11 29 29 H 1.09001 * 108.87297 * 56.39129 * 15 14 12 30 30 H 1.08997 * 109.62836 * 278.97481 * 16 15 14 31 31 H 1.08998 * 109.62836 * 39.55170 * 16 15 14 32 32 H 1.09003 * 108.87949 * 333.36946 * 17 16 15 33 33 H 1.09009 * 108.87465 * 214.92929 * 17 16 15 34 34 H 1.08997 * 108.81227 * 197.42502 * 18 17 16 35 35 H 1.08997 * 108.72983 * 79.07699 * 18 17 16 36 36 H 1.08996 * 108.87374 * 197.51308 * 19 18 17 37 37 H 1.08995 * 108.80028 * 79.01003 * 19 18 17 38 38 H 1.08996 * 109.63338 * 334.44473 * 20 19 18 39 39 H 1.09006 * 109.62520 * 213.86413 * 20 19 18 40 40 H 1.08999 * 108.90070 * 303.44415 * 21 15 14 41 41 H 1.09001 * 108.89367 * 62.03476 * 21 15 14 42 42 H 1.09001 * 113.47097 * 87.44038 * 22 11 10 43 43 H 1.09001 * 113.46791 * 217.88377 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5116 -1.1941 -0.0011 10 6 4.1409 -2.5941 -0.0010 11 7 5.1446 -2.0862 0.9462 12 6 6.4190 -2.3884 1.2645 13 8 6.9895 -3.2916 0.6905 14 6 7.1349 -1.6038 2.3336 15 6 8.5566 -2.1448 2.4975 16 6 8.4816 -3.6159 2.9551 17 6 9.7896 -4.2849 2.6301 18 6 10.7727 -4.2651 3.8162 19 6 10.7839 -2.9160 4.5603 20 6 10.7433 -1.7406 3.6217 21 6 9.2741 -1.3050 3.4452 22 6 4.1439 -1.1078 1.3978 23 1 -0.4850 0.8400 0.0004 24 1 3.9421 -0.5103 -0.7325 25 1 4.5602 -2.8816 -0.9653 26 1 3.4936 -3.3620 0.4226 27 1 7.1772 -0.5531 2.0464 28 1 6.5977 -1.7011 3.2770 29 1 9.0635 -2.1019 1.5335 30 1 8.3067 -3.6565 4.0301 31 1 7.6713 -4.1217 2.4301 32 1 10.2474 -3.7724 1.7840 33 1 9.5960 -5.3204 2.3499 34 1 11.7766 -4.4697 3.4442 35 1 10.4912 -5.0508 4.5173 36 1 11.6892 -2.8539 5.1642 37 1 9.9170 -2.8712 5.2194 38 1 11.1583 -2.0286 2.6559 39 1 11.3214 -0.9171 4.0410 40 1 9.2516 -0.2744 3.0912 41 1 8.7736 -1.3568 4.4121 42 1 3.4968 -1.4830 2.1906 43 1 4.5658 -0.1288 1.6252 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598033725.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:26 Heat of formation + Delta-G solvation = -43.214922 kcal Electronic energy + Delta-G solvation = -20562.430441 eV Core-core repulsion = 17606.997394 eV Total energy + Delta-G solvation = -2955.433046 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.41966 -40.08385 -38.50892 -34.66952 -34.56422 -32.92044 -31.61732 -29.21346 -26.87932 -26.72943 -25.63357 -24.25702 -21.88036 -21.10580 -20.17947 -19.67693 -19.11370 -17.90543 -16.94476 -16.61903 -16.58880 -16.14440 -15.64810 -15.37583 -15.04985 -14.75046 -14.45999 -13.96904 -13.83089 -13.55455 -13.52124 -13.38915 -13.19891 -12.97743 -12.62739 -12.48209 -12.46942 -11.82733 -11.70479 -11.59005 -11.43821 -11.38979 -11.26420 -11.19392 -11.15863 -10.96753 -10.70349 -10.49209 -9.58150 -8.27038 -6.35089 1.43198 1.45153 1.55741 1.67424 2.02800 2.39948 3.04770 3.54900 3.66588 3.74006 3.97467 4.04155 4.20878 4.22941 4.29334 4.35111 4.44014 4.47062 4.51958 4.56220 4.61422 4.66474 4.74976 4.78397 4.82252 4.87476 4.94430 4.97594 5.11825 5.17110 5.23928 5.33125 5.35729 5.37743 5.40405 5.42523 5.55820 5.60516 5.61458 5.65990 6.28870 6.71240 6.92857 7.21009 7.32848 8.88612 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.037932 B = 0.003966 C = 0.003719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.976244 B = 7058.552647 C = 7526.895979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.019 3.981 3 Si 0.942 3.058 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.227 1.227 7 C -0.515 4.515 8 H 0.039 0.961 9 C -0.014 4.014 10 C 0.112 3.888 11 N -0.649 5.649 12 C 0.527 3.473 13 O -0.584 6.584 14 C -0.128 4.128 15 C -0.060 4.060 16 C -0.111 4.111 17 C -0.111 4.111 18 C -0.114 4.114 19 C -0.117 4.117 20 C -0.114 4.114 21 C -0.112 4.112 22 C 0.099 3.901 23 H 0.268 0.732 24 H 0.065 0.935 25 H 0.060 0.940 26 H 0.073 0.927 27 H 0.105 0.895 28 H 0.106 0.894 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.048 0.952 32 H 0.050 0.950 33 H 0.045 0.955 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.084 0.916 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.211 -0.397 10.308 23.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.179 4.179 3 Si 0.765 3.235 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.150 1.150 7 C -0.553 4.553 8 H 0.057 0.943 9 C -0.034 4.034 10 C -0.011 4.011 11 N -0.383 5.383 12 C 0.319 3.681 13 O -0.465 6.465 14 C -0.167 4.167 15 C -0.079 4.079 16 C -0.148 4.148 17 C -0.149 4.149 18 C -0.151 4.151 19 C -0.155 4.155 20 C -0.152 4.152 21 C -0.150 4.150 22 C -0.024 4.024 23 H 0.077 0.923 24 H 0.083 0.917 25 H 0.079 0.921 26 H 0.092 0.908 27 H 0.124 0.876 28 H 0.124 0.876 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.103 0.897 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 21.588 -0.821 10.082 23.840 hybrid contribution -0.645 0.303 -0.470 0.853 sum 20.943 -0.518 9.612 23.049 Atomic orbital electron populations 1.70046 1.08495 1.28406 1.51452 1.25905 0.95352 1.03254 0.93435 0.85831 0.80376 0.78231 0.79058 1.20097 1.21362 1.14966 1.20943 0.89804 0.93401 1.51172 0.94313 1.20719 0.94194 0.94181 0.94283 1.22946 0.87225 0.98468 0.92484 1.50050 1.10397 1.37495 1.40365 1.21018 0.79694 0.83566 0.83817 1.90616 1.66605 1.33627 1.55661 1.21860 0.96894 1.00558 0.97428 1.19811 0.92958 0.95396 0.99767 1.21405 0.97807 0.95072 1.00534 1.21211 0.95510 0.99687 0.98459 1.21916 0.98710 0.97797 0.96715 1.21345 1.02235 0.93776 0.98116 1.21301 0.95792 0.98106 0.99972 1.20532 0.95841 0.99068 0.99527 1.23693 0.86894 0.91891 0.99884 0.92317 0.91650 0.92120 0.90838 0.87646 0.87626 0.92666 0.91467 0.93379 0.93137 0.93658 0.91986 0.92194 0.91333 0.92035 0.92436 0.90590 0.91347 0.91125 0.89749 0.89926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.64 13.96 21.45 0.30 -55.34 16 2 C 0.02 1.02 5.47 84.66 0.46 1.48 16 3 Si 0.94 39.68 27.15 68.60 1.86 41.55 16 4 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.29 -12.13 7.11 99.48 0.71 -11.43 16 6 H -0.23 -8.23 5.72 99.48 0.57 -7.67 16 7 C -0.52 -27.01 9.38 25.60 0.24 -26.77 16 8 H 0.04 2.28 8.06 -2.91 -0.02 2.26 16 9 C -0.01 -0.60 2.97 -11.12 -0.03 -0.64 16 10 C 0.11 4.46 8.17 83.17 0.68 5.14 16 11 N -0.65 -23.71 3.69 -857.90 -3.16 -26.88 16 12 C 0.53 18.21 7.57 87.66 0.66 18.87 16 13 O -0.58 -23.73 14.72 -3.03 -0.04 -23.78 16 14 C -0.13 -3.15 4.93 29.85 0.15 -3.00 16 15 C -0.06 -1.37 1.39 -12.65 -0.02 -1.39 16 16 C -0.11 -2.71 4.61 30.20 0.14 -2.57 16 17 C -0.11 -2.47 5.31 30.14 0.16 -2.31 16 18 C -0.11 -1.91 5.85 31.32 0.18 -1.73 16 19 C -0.12 -1.70 5.32 30.14 0.16 -1.54 16 20 C -0.11 -1.72 5.61 30.20 0.17 -1.55 16 21 C -0.11 -1.88 4.44 28.74 0.13 -1.75 16 22 C 0.10 3.55 7.43 83.26 0.62 4.17 16 23 H 0.27 14.76 8.31 -92.71 -0.77 13.98 16 24 H 0.07 2.72 7.03 -2.39 -0.02 2.70 16 25 H 0.06 2.39 8.14 -2.38 -0.02 2.37 16 26 H 0.07 2.98 8.10 -2.39 -0.02 2.96 16 27 H 0.11 2.26 8.07 -2.38 -0.02 2.24 16 28 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.05 1.46 7.31 -2.39 -0.02 1.45 16 30 H 0.07 1.45 6.97 -2.39 -0.02 1.43 16 31 H 0.05 1.51 5.61 -2.39 -0.01 1.50 16 32 H 0.05 1.20 6.63 -2.39 -0.02 1.18 16 33 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 34 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.06 0.95 8.14 -2.39 -0.02 0.94 16 36 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.06 0.90 6.62 -2.39 -0.02 0.88 16 38 H 0.06 0.97 6.98 -2.39 -0.02 0.96 16 39 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 40 H 0.07 1.04 8.06 -2.39 -0.02 1.02 16 41 H 0.07 1.07 7.46 -2.39 -0.02 1.05 16 42 H 0.08 3.04 8.10 -2.39 -0.02 3.02 16 43 H 0.08 2.59 7.15 -2.39 -0.02 2.58 16 Total: -1.00 -63.00 325.37 3.48 -59.51 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: 0.83 Total: 18.53 kcal Atomic # 6 Polarization: -17.29 SS G_CDS: 3.70 Total: -13.59 kcal Atomic # 7 Polarization: -79.36 SS G_CDS: -2.86 Total: -82.22 kcal Atomic # 8 Polarization: -23.73 SS G_CDS: -0.04 Total: -23.78 kcal Atomic # 14 Polarization: 39.68 SS G_CDS: 1.86 Total: 41.55 kcal Total: -63.00 3.48 -59.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598033725.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.299 kcal (2) G-P(sol) polarization free energy of solvation -62.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds