Wall clock time and date at job start Mon Mar 30 2020 06:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 119.99606 * 2 1 4 4 H 1.48501 * 109.47306 * 269.99874 * 3 2 1 5 5 H 1.48500 * 109.47510 * 30.00376 * 3 2 1 6 6 H 1.48509 * 109.46918 * 150.00260 * 3 2 1 7 7 C 1.37874 * 119.99885 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00114 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99722 * 180.02562 * 7 2 1 10 10 C 1.53492 * 114.20908 * 180.02562 * 9 7 2 11 11 N 1.47062 * 87.98719 * 220.14614 * 10 9 7 12 12 C 1.34776 * 136.05806 * 207.08628 * 11 10 9 13 13 O 1.21282 * 119.99940 * 359.97438 * 12 11 10 14 14 C 1.50698 * 120.00035 * 180.02562 * 12 11 10 15 15 C 1.53006 * 109.47184 * 179.97438 * 14 12 11 16 16 C 1.52997 * 109.47127 * 179.97438 * 15 14 12 17 17 C 1.52996 * 109.47131 * 180.02562 * 16 15 14 18 18 C 1.54269 * 110.03002 * 292.90238 * 17 16 15 19 19 C 1.54968 * 104.16270 * 217.13569 * 18 17 16 20 20 C 1.54891 * 102.77349 * 37.89019 * 19 18 17 21 21 C 1.53880 * 110.03478 * 175.68993 * 17 16 15 22 22 C 1.47064 * 87.88775 * 27.33992 * 11 10 9 23 23 H 0.97004 * 120.00653 * 359.97438 * 1 2 3 24 24 H 1.09008 * 113.27928 * 313.06836 * 9 7 2 25 25 H 1.09000 * 113.47214 * 105.36253 * 10 9 7 26 26 H 1.09008 * 113.51999 * 334.93344 * 10 9 7 27 27 H 1.09001 * 109.47612 * 59.99945 * 14 12 11 28 28 H 1.09001 * 109.47122 * 299.99777 * 14 12 11 29 29 H 1.09001 * 109.47002 * 299.99404 * 15 14 12 30 30 H 1.08993 * 109.46955 * 59.99842 * 15 14 12 31 31 H 1.09001 * 109.47289 * 299.99953 * 16 15 14 32 32 H 1.09004 * 109.47261 * 59.99697 * 16 15 14 33 33 H 1.08998 * 110.02194 * 54.29437 * 17 16 15 34 34 H 1.08996 * 110.49099 * 335.78808 * 18 17 16 35 35 H 1.09011 * 110.48368 * 98.42916 * 18 17 16 36 36 H 1.09000 * 110.72004 * 279.57872 * 19 18 17 37 37 H 1.09000 * 110.91942 * 156.29863 * 19 18 17 38 38 H 1.08998 * 110.48414 * 203.40018 * 20 19 18 39 39 H 1.08998 * 110.59704 * 80.81944 * 20 19 18 40 40 H 1.08991 * 110.03386 * 238.56590 * 21 17 16 41 41 H 1.08996 * 110.02827 * 359.97438 * 21 17 16 42 42 H 1.09006 * 113.46975 * 87.43340 * 22 11 10 43 43 H 1.08996 * 113.47171 * 217.88169 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.1409 -2.5939 -0.0013 11 7 5.1440 -2.0871 0.9473 12 6 6.4181 -2.3896 1.2661 13 8 6.9891 -3.2921 0.6913 14 6 7.1329 -1.6071 2.3374 15 6 8.5542 -2.1489 2.5024 16 6 9.2801 -1.3540 3.5896 17 6 10.7016 -1.8954 3.7541 18 6 10.6588 -3.3266 4.3285 19 6 11.8759 -3.3875 5.2858 20 6 11.8809 -1.9760 5.9236 21 6 11.4787 -1.0370 4.7676 22 6 4.1430 -1.1093 1.3994 23 1 -0.4851 0.8400 0.0004 24 1 3.9426 -0.5097 -0.7308 25 1 4.5609 -2.8802 -0.9655 26 1 3.4934 -3.3624 0.4211 27 1 6.5949 -1.7065 3.2802 28 1 7.1752 -0.5558 2.0524 29 1 8.5115 -3.2001 2.7876 30 1 9.0925 -2.0498 1.5598 31 1 9.3228 -0.3030 3.3040 32 1 8.7419 -1.4527 4.5324 33 1 11.2150 -1.8942 2.7926 34 1 9.7322 -3.4892 4.8789 35 1 10.7633 -4.0614 3.5300 36 1 12.7962 -3.5630 4.7288 37 1 11.7344 -4.1549 6.0469 38 1 12.8769 -1.7261 6.2891 39 1 11.1531 -1.9183 6.7329 40 1 12.3695 -0.6199 4.2982 41 1 10.8432 -0.2345 5.1419 42 1 3.4952 -1.4856 2.1913 43 1 4.5646 -0.1306 1.6285 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598034474.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:48 Heat of formation + Delta-G solvation = -38.016897 kcal Electronic energy + Delta-G solvation = -19725.202014 eV Core-core repulsion = 16769.994371 eV Total energy + Delta-G solvation = -2955.207643 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.68602 -38.73612 -37.34764 -34.23046 -32.66489 -30.54181 -29.27835 -28.86887 -26.21600 -25.10177 -24.59720 -21.81675 -20.78980 -20.04258 -19.71980 -18.21291 -17.20198 -16.51859 -15.98049 -15.64648 -15.40713 -14.97928 -14.61788 -14.06496 -13.64236 -13.55118 -13.15243 -12.85194 -12.70066 -12.40869 -12.08149 -11.83780 -11.58806 -11.51219 -11.34654 -11.25245 -10.97516 -10.86433 -10.84589 -10.76693 -10.66461 -10.57562 -10.43066 -10.11222 -9.82136 -9.36471 -9.10990 -8.67870 -8.03205 -6.22735 -4.25458 3.08591 3.19382 3.28189 3.28799 3.47728 4.28943 4.35176 4.42351 4.49365 4.83340 4.95132 5.01531 5.01866 5.22532 5.26061 5.31274 5.40118 5.43686 5.46957 5.58690 5.61470 5.68220 5.75042 5.75637 5.79904 5.86384 5.90238 5.96856 6.04390 6.09018 6.12986 6.20221 6.24605 6.30836 6.33966 6.38704 6.41738 6.56459 7.12962 7.53187 8.31572 8.41597 8.65904 8.81068 9.38251 10.89287 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.034617 B = 0.003246 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.654130 B = 8623.138043 C = 9127.137626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.076 3.924 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.261 1.261 7 C -0.513 4.513 8 H 0.080 0.920 9 C -0.007 4.007 10 C 0.112 3.888 11 N -0.647 5.647 12 C 0.531 3.469 13 O -0.563 6.563 14 C -0.134 4.134 15 C -0.102 4.102 16 C -0.113 4.113 17 C -0.092 4.092 18 C -0.121 4.121 19 C -0.127 4.127 20 C -0.125 4.125 21 C -0.122 4.122 22 C 0.085 3.915 23 H 0.267 0.733 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.064 0.936 42 H 0.084 0.916 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.061 -0.805 10.465 22.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.127 4.127 3 Si 0.703 3.297 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.185 1.185 7 C -0.551 4.551 8 H 0.098 0.902 9 C -0.026 4.026 10 C -0.010 4.010 11 N -0.381 5.381 12 C 0.321 3.679 13 O -0.443 6.443 14 C -0.174 4.174 15 C -0.140 4.140 16 C -0.150 4.150 17 C -0.111 4.111 18 C -0.158 4.158 19 C -0.164 4.164 20 C -0.163 4.163 21 C -0.160 4.160 22 C -0.038 4.038 23 H 0.077 0.923 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.097 0.903 27 H 0.106 0.894 28 H 0.105 0.895 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.102 0.898 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 20.403 -1.203 10.222 22.852 hybrid contribution 0.227 1.007 0.098 1.037 sum 20.629 -0.196 10.319 23.067 Atomic orbital electron populations 1.69892 1.06379 1.27335 1.49261 1.25017 0.94685 0.99202 0.93831 0.86878 0.80476 0.83505 0.78804 1.20156 1.21235 1.18517 1.20776 0.87491 0.94891 1.51914 0.90235 1.20794 0.96887 0.92872 0.92073 1.23087 0.86692 0.99339 0.91851 1.50015 1.10059 1.37575 1.40452 1.20226 0.80452 0.83679 0.83572 1.90638 1.66347 1.32509 1.54829 1.21604 0.96820 1.00662 0.98338 1.21350 0.93356 1.00141 0.99133 1.21745 0.94824 0.99438 0.98997 1.21784 0.95743 0.94795 0.98763 1.22480 0.98233 0.96485 0.98622 1.22520 0.98534 0.96838 0.98531 1.22352 1.00926 0.95177 0.97806 1.22228 0.99688 0.98071 0.95971 1.23959 0.87134 0.90688 1.02041 0.92350 0.92220 0.92136 0.90281 0.89410 0.89455 0.91221 0.91429 0.92014 0.91885 0.91069 0.91410 0.91625 0.91739 0.91824 0.92066 0.91764 0.92088 0.91718 0.89751 0.92346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.61 13.96 55.43 0.77 -24.84 16 2 C 0.08 2.03 5.47 -17.82 -0.10 1.93 16 3 Si 0.88 19.78 27.15 -169.99 -4.62 15.16 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 5 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.26 -5.45 5.72 56.52 0.32 -5.13 16 7 C -0.51 -13.24 9.38 -34.44 -0.32 -13.57 16 8 H 0.08 2.23 8.06 -52.49 -0.42 1.81 16 9 C -0.01 -0.15 2.96 -91.12 -0.27 -0.42 16 10 C 0.11 2.27 8.17 -8.51 -0.07 2.21 16 11 N -0.65 -12.55 3.69 -185.06 -0.68 -13.23 16 12 C 0.53 9.87 8.08 -10.99 -0.09 9.78 16 13 O -0.56 -12.14 16.76 5.56 0.09 -12.05 16 14 C -0.13 -1.86 5.53 -27.88 -0.15 -2.01 16 15 C -0.10 -1.26 4.35 -26.73 -0.12 -1.38 16 16 C -0.11 -1.10 4.34 -26.73 -0.12 -1.21 16 17 C -0.09 -0.84 2.93 -89.50 -0.26 -1.10 16 18 C -0.12 -1.08 5.50 -25.03 -0.14 -1.22 16 19 C -0.13 -0.99 6.91 -24.69 -0.17 -1.16 16 20 C -0.13 -0.93 6.83 -25.07 -0.17 -1.11 16 21 C -0.12 -0.97 6.46 -25.61 -0.17 -1.14 16 22 C 0.08 1.63 7.44 -8.37 -0.06 1.57 16 23 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 24 H 0.06 1.31 7.03 -51.92 -0.37 0.95 16 25 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 26 H 0.08 1.58 8.10 -51.92 -0.42 1.16 16 27 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 28 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.07 0.92 7.44 -51.93 -0.39 0.54 16 30 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.59 8.02 -51.93 -0.42 0.17 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.63 7.77 -51.93 -0.40 0.22 16 35 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.51 7.67 -51.93 -0.40 0.11 16 42 H 0.08 1.61 8.10 -51.93 -0.42 1.19 16 43 H 0.06 1.06 7.15 -51.93 -0.37 0.68 16 LS Contribution 341.17 15.07 5.14 5.14 Total: -1.00 -29.26 341.17 -9.38 -38.64 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -7.89 Total: -0.01 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: -2.21 Total: -8.82 kcal Atomic # 7 Polarization: -38.16 SS G_CDS: 0.09 Total: -38.07 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.09 Total: -12.05 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -4.62 Total: 15.16 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.26 -9.38 -38.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598034474.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.624 kcal (2) G-P(sol) polarization free energy of solvation -29.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds