Wall clock time and date at job start Mon Mar 30 2020 06:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 119.99606 * 2 1 4 4 H 1.48501 * 109.47306 * 269.99874 * 3 2 1 5 5 H 1.48500 * 109.47510 * 30.00376 * 3 2 1 6 6 H 1.48509 * 109.46918 * 150.00260 * 3 2 1 7 7 C 1.37874 * 119.99885 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00114 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99722 * 180.02562 * 7 2 1 10 10 C 1.53492 * 114.20908 * 180.02562 * 9 7 2 11 11 N 1.47062 * 87.98719 * 220.14614 * 10 9 7 12 12 C 1.34776 * 136.05806 * 207.08628 * 11 10 9 13 13 O 1.21282 * 119.99940 * 359.97438 * 12 11 10 14 14 C 1.50698 * 120.00035 * 180.02562 * 12 11 10 15 15 C 1.53006 * 109.47184 * 179.97438 * 14 12 11 16 16 C 1.52997 * 109.47127 * 179.97438 * 15 14 12 17 17 C 1.52996 * 109.47131 * 180.02562 * 16 15 14 18 18 C 1.54269 * 110.03002 * 292.90238 * 17 16 15 19 19 C 1.54968 * 104.16270 * 217.13569 * 18 17 16 20 20 C 1.54891 * 102.77349 * 37.89019 * 19 18 17 21 21 C 1.53880 * 110.03478 * 175.68993 * 17 16 15 22 22 C 1.47064 * 87.88775 * 27.33992 * 11 10 9 23 23 H 0.97004 * 120.00653 * 359.97438 * 1 2 3 24 24 H 1.09008 * 113.27928 * 313.06836 * 9 7 2 25 25 H 1.09000 * 113.47214 * 105.36253 * 10 9 7 26 26 H 1.09008 * 113.51999 * 334.93344 * 10 9 7 27 27 H 1.09001 * 109.47612 * 59.99945 * 14 12 11 28 28 H 1.09001 * 109.47122 * 299.99777 * 14 12 11 29 29 H 1.09001 * 109.47002 * 299.99404 * 15 14 12 30 30 H 1.08993 * 109.46955 * 59.99842 * 15 14 12 31 31 H 1.09001 * 109.47289 * 299.99953 * 16 15 14 32 32 H 1.09004 * 109.47261 * 59.99697 * 16 15 14 33 33 H 1.08998 * 110.02194 * 54.29437 * 17 16 15 34 34 H 1.08996 * 110.49099 * 335.78808 * 18 17 16 35 35 H 1.09011 * 110.48368 * 98.42916 * 18 17 16 36 36 H 1.09000 * 110.72004 * 279.57872 * 19 18 17 37 37 H 1.09000 * 110.91942 * 156.29863 * 19 18 17 38 38 H 1.08998 * 110.48414 * 203.40018 * 20 19 18 39 39 H 1.08998 * 110.59704 * 80.81944 * 20 19 18 40 40 H 1.08991 * 110.03386 * 238.56590 * 21 17 16 41 41 H 1.08996 * 110.02827 * 359.97438 * 21 17 16 42 42 H 1.09006 * 113.46975 * 87.43340 * 22 11 10 43 43 H 1.08996 * 113.47171 * 217.88169 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.1409 -2.5939 -0.0013 11 7 5.1440 -2.0871 0.9473 12 6 6.4181 -2.3896 1.2661 13 8 6.9891 -3.2921 0.6913 14 6 7.1329 -1.6071 2.3374 15 6 8.5542 -2.1489 2.5024 16 6 9.2801 -1.3540 3.5896 17 6 10.7016 -1.8954 3.7541 18 6 10.6588 -3.3266 4.3285 19 6 11.8759 -3.3875 5.2858 20 6 11.8809 -1.9760 5.9236 21 6 11.4787 -1.0370 4.7676 22 6 4.1430 -1.1093 1.3994 23 1 -0.4851 0.8400 0.0004 24 1 3.9426 -0.5097 -0.7308 25 1 4.5609 -2.8802 -0.9655 26 1 3.4934 -3.3624 0.4211 27 1 6.5949 -1.7065 3.2802 28 1 7.1752 -0.5558 2.0524 29 1 8.5115 -3.2001 2.7876 30 1 9.0925 -2.0498 1.5598 31 1 9.3228 -0.3030 3.3040 32 1 8.7419 -1.4527 4.5324 33 1 11.2150 -1.8942 2.7926 34 1 9.7322 -3.4892 4.8789 35 1 10.7633 -4.0614 3.5300 36 1 12.7962 -3.5630 4.7288 37 1 11.7344 -4.1549 6.0469 38 1 12.8769 -1.7261 6.2891 39 1 11.1531 -1.9183 6.7329 40 1 12.3695 -0.6199 4.2982 41 1 10.8432 -0.2345 5.1419 42 1 3.4952 -1.4856 2.1913 43 1 4.5646 -0.1306 1.6285 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598034474.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:47 Heat of formation + Delta-G solvation = -53.418378 kcal Electronic energy + Delta-G solvation = -19725.869872 eV Core-core repulsion = 16769.994371 eV Total energy + Delta-G solvation = -2955.875501 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.21605 -39.51760 -38.83305 -35.19430 -34.66067 -31.84569 -30.53694 -29.52911 -27.62656 -26.73770 -25.85233 -22.83646 -21.74477 -21.30709 -20.47315 -19.70789 -19.11815 -17.94269 -17.03596 -16.72509 -16.55927 -16.29812 -15.77808 -15.55949 -14.98894 -14.76539 -14.19653 -14.09368 -13.90118 -13.61122 -13.47753 -13.31871 -12.96342 -12.61204 -12.49856 -12.44249 -11.93734 -11.93117 -11.81693 -11.78430 -11.61747 -11.52452 -11.44103 -11.35105 -11.20935 -11.15409 -10.76598 -10.59724 -9.62401 -8.26696 -6.34868 1.43643 1.45645 1.56222 1.63291 2.00325 2.40286 3.04924 3.49911 3.72799 3.78759 3.80495 4.01654 4.10919 4.12602 4.27732 4.41483 4.48556 4.53053 4.59007 4.61348 4.63883 4.67980 4.74673 4.80281 4.81719 4.82724 4.89428 4.95274 4.98946 5.03867 5.09061 5.14573 5.28230 5.32488 5.37478 5.39942 5.46756 5.52014 5.61137 5.61205 6.28979 6.71393 6.89664 7.15843 7.32928 8.88837 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.034617 B = 0.003246 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.654130 B = 8623.138043 C = 9127.137626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.018 3.982 3 Si 0.942 3.058 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.226 1.226 7 C -0.515 4.515 8 H 0.039 0.961 9 C -0.014 4.014 10 C 0.110 3.890 11 N -0.648 5.648 12 C 0.525 3.475 13 O -0.598 6.598 14 C -0.126 4.126 15 C -0.096 4.096 16 C -0.104 4.104 17 C -0.094 4.094 18 C -0.124 4.124 19 C -0.126 4.126 20 C -0.124 4.124 21 C -0.120 4.120 22 C 0.099 3.901 23 H 0.268 0.732 24 H 0.066 0.934 25 H 0.060 0.940 26 H 0.075 0.925 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.054 0.946 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.086 0.914 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.426 1.007 11.983 25.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.180 4.180 3 Si 0.766 3.234 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.149 1.149 7 C -0.553 4.553 8 H 0.057 0.943 9 C -0.034 4.034 10 C -0.013 4.013 11 N -0.382 5.382 12 C 0.317 3.683 13 O -0.480 6.480 14 C -0.165 4.165 15 C -0.134 4.134 16 C -0.142 4.142 17 C -0.112 4.112 18 C -0.161 4.161 19 C -0.164 4.164 20 C -0.162 4.162 21 C -0.158 4.158 22 C -0.023 4.023 23 H 0.077 0.923 24 H 0.084 0.916 25 H 0.079 0.921 26 H 0.093 0.907 27 H 0.126 0.874 28 H 0.126 0.874 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.104 0.896 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 22.796 0.595 11.755 25.655 hybrid contribution -0.544 0.292 -0.433 0.754 sum 22.252 0.887 11.322 24.982 Atomic orbital electron populations 1.70045 1.08493 1.28407 1.51418 1.25910 0.95368 1.03284 0.93448 0.85824 0.80392 0.78193 0.79039 1.20145 1.21384 1.14893 1.20928 0.89756 0.93403 1.51182 0.94302 1.20724 0.94232 0.94101 0.94301 1.22980 0.87224 0.98602 0.92474 1.50036 1.10359 1.37545 1.40228 1.21155 0.79805 0.83461 0.83854 1.90626 1.66883 1.34229 1.56262 1.21681 0.96843 1.00798 0.97226 1.21295 0.92840 0.99841 0.99423 1.21685 0.94787 0.99447 0.98242 1.21785 0.95573 0.94986 0.98874 1.22489 0.98705 0.96363 0.98593 1.22527 0.97978 0.97452 0.98419 1.22361 1.01557 0.94596 0.97646 1.22217 0.99775 0.98036 0.95756 1.23719 0.86785 0.91903 0.99919 0.92322 0.91595 0.92112 0.90713 0.87361 0.87413 0.92606 0.92864 0.90963 0.91029 0.91759 0.91749 0.92676 0.91584 0.91346 0.91146 0.91550 0.91665 0.91185 0.89603 0.89743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.48 13.96 21.45 0.30 -55.18 16 2 C 0.02 0.98 5.47 84.65 0.46 1.44 16 3 Si 0.94 39.53 27.15 68.60 1.86 41.39 16 4 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 5 H -0.29 -12.10 7.11 99.48 0.71 -11.39 16 6 H -0.23 -8.14 5.72 99.48 0.57 -7.57 16 7 C -0.51 -26.89 9.38 25.60 0.24 -26.65 16 8 H 0.04 2.28 8.06 -2.91 -0.02 2.26 16 9 C -0.01 -0.59 2.96 -11.12 -0.03 -0.63 16 10 C 0.11 4.40 8.17 83.18 0.68 5.08 16 11 N -0.65 -23.78 3.69 -857.80 -3.16 -26.95 16 12 C 0.52 18.46 8.08 87.66 0.71 19.17 16 13 O -0.60 -25.32 16.76 -3.04 -0.05 -25.38 16 14 C -0.13 -3.07 5.53 29.85 0.17 -2.91 16 15 C -0.10 -2.18 4.35 30.60 0.13 -2.05 16 16 C -0.10 -1.73 4.34 30.59 0.13 -1.60 16 17 C -0.09 -1.51 2.93 -10.07 -0.03 -1.54 16 18 C -0.12 -2.07 5.50 31.70 0.17 -1.90 16 19 C -0.13 -1.75 6.91 31.91 0.22 -1.53 16 20 C -0.12 -1.56 6.83 31.67 0.22 -1.34 16 21 C -0.12 -1.61 6.46 31.32 0.20 -1.41 16 22 C 0.10 3.54 7.44 83.27 0.62 4.15 16 23 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 24 H 0.07 2.73 7.03 -2.38 -0.02 2.72 16 25 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 26 H 0.07 3.02 8.10 -2.38 -0.02 3.00 16 27 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 28 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.06 1.42 7.44 -2.39 -0.02 1.40 16 30 H 0.05 1.36 8.10 -2.39 -0.02 1.34 16 31 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.07 1.10 8.02 -2.38 -0.02 1.08 16 33 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.06 1.11 7.77 -2.39 -0.02 1.09 16 35 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 36 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.07 0.87 7.67 -2.39 -0.02 0.85 16 42 H 0.09 3.06 8.10 -2.38 -0.02 3.05 16 43 H 0.08 2.61 7.15 -2.39 -0.02 2.60 16 Total: -1.00 -63.87 341.17 3.65 -60.22 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: 0.81 Total: 17.60 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: 3.89 Total: -11.71 kcal Atomic # 7 Polarization: -79.27 SS G_CDS: -2.86 Total: -82.13 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: -0.05 Total: -25.38 kcal Atomic # 14 Polarization: 39.53 SS G_CDS: 1.86 Total: 41.39 kcal Total: -63.87 3.65 -60.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598034474.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.800 kcal (2) G-P(sol) polarization free energy of solvation -63.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds