Wall clock time and date at job start Mon Mar 30 2020 07:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86796 * 119.99913 * 2 1 4 4 H 1.48503 * 109.47374 * 269.99722 * 3 2 1 5 5 H 1.48501 * 109.47347 * 30.00048 * 3 2 1 6 6 H 1.48500 * 109.46791 * 150.00170 * 3 2 1 7 7 C 1.37871 * 119.99795 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00582 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00236 * 180.02562 * 7 2 1 10 10 C 1.53498 * 114.21161 * 180.02562 * 9 7 2 11 11 N 1.47067 * 87.98280 * 220.14721 * 10 9 7 12 12 C 1.34777 * 136.05471 * 207.07965 * 11 10 9 13 13 O 1.21279 * 120.00166 * 0.02562 * 12 11 10 14 14 C 1.50706 * 120.00142 * 179.97438 * 12 11 10 15 15 C 1.52999 * 109.46957 * 180.02562 * 14 12 11 16 16 C 1.53006 * 109.46626 * 180.02562 * 15 14 12 17 17 C 1.52996 * 109.47102 * 294.99833 * 16 15 14 18 18 C 1.52996 * 109.46951 * 180.02562 * 17 16 15 19 19 C 1.53001 * 109.47365 * 59.99890 * 18 17 16 20 20 C 1.52996 * 109.47176 * 299.99973 * 19 18 17 21 21 C 1.52997 * 109.46646 * 174.99857 * 16 15 14 22 22 C 1.47067 * 87.88709 * 27.33803 * 11 10 9 23 23 H 0.96995 * 119.99694 * 0.02562 * 1 2 3 24 24 H 1.09003 * 113.28083 * 313.06590 * 9 7 2 25 25 H 1.08993 * 113.47322 * 105.36621 * 10 9 7 26 26 H 1.09004 * 113.51450 * 334.93082 * 10 9 7 27 27 H 1.08993 * 109.46700 * 59.99973 * 14 12 11 28 28 H 1.09000 * 109.46974 * 300.00347 * 14 12 11 29 29 H 1.08993 * 109.47839 * 60.00178 * 15 14 12 30 30 H 1.09000 * 109.47160 * 299.99740 * 15 14 12 31 31 H 1.09000 * 109.47314 * 54.99967 * 16 15 14 32 32 H 1.09006 * 109.46822 * 299.99923 * 17 16 15 33 33 H 1.08997 * 109.47474 * 60.00037 * 17 16 15 34 34 H 1.08993 * 109.47243 * 299.99585 * 18 17 16 35 35 H 1.09007 * 109.46984 * 179.97438 * 18 17 16 36 36 H 1.09002 * 109.47083 * 179.97438 * 19 18 17 37 37 H 1.09000 * 109.46998 * 59.99958 * 19 18 17 38 38 H 1.09006 * 109.46822 * 300.00209 * 20 19 18 39 39 H 1.08997 * 109.47474 * 180.02562 * 20 19 18 40 40 H 1.09004 * 109.47394 * 299.99282 * 21 16 15 41 41 H 1.08990 * 109.47621 * 60.00181 * 21 16 15 42 42 H 1.09004 * 113.46270 * 87.43894 * 22 11 10 43 43 H 1.09001 * 113.46751 * 217.87254 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0014 9 6 3.5115 -1.1941 0.0000 10 6 4.1409 -2.5941 -0.0013 11 7 5.1440 -2.0873 0.9473 12 6 6.4181 -2.3899 1.2662 13 8 6.9893 -3.2919 0.6910 14 6 7.1333 -1.6066 2.3367 15 6 8.5549 -2.1479 2.5010 16 6 9.2807 -1.3531 3.5884 17 6 9.4502 0.0975 3.1324 18 6 10.1766 0.8922 4.2195 19 6 11.5527 0.2725 4.4708 20 6 11.3833 -1.1781 4.9267 21 6 10.6568 -1.9726 3.8401 22 6 4.1429 -1.1094 1.3994 23 1 -0.4849 0.8400 -0.0004 24 1 3.9427 -0.5100 -0.7308 25 1 4.5609 -2.8804 -0.9654 26 1 3.4933 -3.3625 0.4211 27 1 6.5954 -1.7051 3.2796 28 1 7.1759 -0.5556 2.0508 29 1 9.0926 -2.0491 1.5581 30 1 8.5126 -3.1990 2.7868 31 1 8.6968 -1.3789 4.5084 32 1 10.0342 0.1233 2.2124 33 1 8.4699 0.5389 2.9530 34 1 9.5930 0.8664 5.1396 35 1 10.2977 1.9256 3.8944 36 1 12.0704 0.8390 5.2449 37 1 12.1363 0.2983 3.5506 38 1 10.7996 -1.2038 5.8470 39 1 12.3636 -1.6194 5.1062 40 1 10.5361 -3.0061 4.1651 41 1 11.2408 -1.9468 2.9203 42 1 3.4953 -1.4858 2.1913 43 1 4.5647 -0.1308 1.6285 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598036207.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:24 Heat of formation + Delta-G solvation = -41.059983 kcal Electronic energy + Delta-G solvation = -20114.373071 eV Core-core repulsion = 17159.033470 eV Total energy + Delta-G solvation = -2955.339601 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.76059 -38.88535 -37.27878 -33.83980 -32.66245 -30.97842 -30.23976 -28.85674 -25.70987 -25.08943 -23.85288 -22.70466 -20.98742 -19.96289 -19.88708 -18.22818 -17.20467 -16.54282 -15.66657 -15.43356 -15.08036 -14.69833 -14.29307 -14.21958 -14.15609 -13.59201 -13.14815 -12.96545 -12.55025 -12.48248 -12.23790 -11.88033 -11.80706 -11.76568 -11.51399 -11.29911 -11.20641 -10.86610 -10.83547 -10.70396 -10.56703 -10.19699 -10.11299 -10.07370 -9.81952 -9.36424 -9.10864 -8.67834 -8.03013 -6.22783 -4.25486 3.08895 3.19310 3.28095 3.28740 3.47913 4.28918 4.47144 4.52395 4.57072 4.90169 4.94462 4.98929 5.02050 5.19749 5.29806 5.32128 5.34832 5.36659 5.45869 5.52625 5.66373 5.74518 5.79181 5.83177 5.87113 5.95462 5.96645 5.99260 6.05731 6.09788 6.13557 6.19683 6.24702 6.31387 6.34208 6.40917 6.42688 6.56533 7.13041 7.53237 8.31670 8.41797 8.66175 8.81042 9.38261 10.89300 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.026414 B = 0.003921 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.781042 B = 7139.464835 C = 7962.736163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.076 3.924 3 Si 0.876 3.124 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.261 1.261 7 C -0.513 4.513 8 H 0.080 0.920 9 C -0.007 4.007 10 C 0.112 3.888 11 N -0.647 5.647 12 C 0.531 3.469 13 O -0.563 6.563 14 C -0.135 4.135 15 C -0.097 4.097 16 C -0.087 4.087 17 C -0.119 4.119 18 C -0.120 4.120 19 C -0.120 4.120 20 C -0.119 4.119 21 C -0.114 4.114 22 C 0.085 3.915 23 H 0.267 0.733 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.079 0.921 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.084 0.916 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.265 1.694 9.546 21.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.127 4.127 3 Si 0.703 3.297 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.185 1.185 7 C -0.551 4.551 8 H 0.098 0.902 9 C -0.026 4.026 10 C -0.010 4.010 11 N -0.381 5.381 12 C 0.321 3.679 13 O -0.444 6.444 14 C -0.175 4.175 15 C -0.135 4.135 16 C -0.106 4.106 17 C -0.156 4.156 18 C -0.157 4.157 19 C -0.157 4.157 20 C -0.157 4.157 21 C -0.151 4.151 22 C -0.038 4.038 23 H 0.076 0.924 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.097 0.903 27 H 0.106 0.894 28 H 0.108 0.892 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.102 0.898 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 19.610 1.289 9.305 21.744 hybrid contribution 0.225 0.982 0.116 1.014 sum 19.834 2.271 9.421 22.075 Atomic orbital electron populations 1.69897 1.06380 1.27331 1.49279 1.25016 0.94680 0.99192 0.93826 0.86880 0.80480 0.83515 0.78813 1.20143 1.21231 1.18515 1.20779 0.87499 0.94894 1.51905 0.90235 1.20791 0.96881 0.92873 0.92074 1.23087 0.86699 0.99337 0.91854 1.50015 1.10064 1.37562 1.40443 1.20239 0.80447 0.83664 0.83580 1.90637 1.66338 1.32565 1.54823 1.21643 0.96687 1.00779 0.98345 1.21369 0.93416 0.99626 0.99047 1.21196 0.96011 0.94754 0.98610 1.21668 1.00577 0.94961 0.98397 1.21537 0.96163 0.98845 0.99193 1.21539 0.97206 0.95947 1.01035 1.21525 1.00111 0.95422 0.98614 1.21561 0.95785 0.98895 0.98907 1.23957 0.87137 0.90683 1.02035 0.92350 0.92224 0.92136 0.90284 0.89417 0.89245 0.91318 0.91333 0.91204 0.91937 0.91676 0.92070 0.92206 0.92387 0.92124 0.92114 0.92278 0.91986 0.91952 0.89756 0.92359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.62 13.96 55.43 0.77 -24.85 16 2 C 0.08 2.03 5.47 -17.82 -0.10 1.94 16 3 Si 0.88 19.77 27.15 -169.99 -4.62 15.16 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.26 -5.45 5.72 56.52 0.32 -5.12 16 7 C -0.51 -13.24 9.38 -34.44 -0.32 -13.57 16 8 H 0.08 2.23 8.06 -52.49 -0.42 1.81 16 9 C -0.01 -0.14 2.96 -91.12 -0.27 -0.41 16 10 C 0.11 2.27 8.17 -8.50 -0.07 2.20 16 11 N -0.65 -12.52 3.69 -185.04 -0.68 -13.21 16 12 C 0.53 9.85 8.08 -10.98 -0.09 9.76 16 13 O -0.56 -12.15 16.76 5.56 0.09 -12.05 16 14 C -0.13 -1.86 5.28 -27.88 -0.15 -2.01 16 15 C -0.10 -1.20 3.97 -26.73 -0.11 -1.31 16 16 C -0.09 -0.86 2.19 -90.62 -0.20 -1.06 16 17 C -0.12 -1.13 4.96 -26.74 -0.13 -1.27 16 18 C -0.12 -1.01 5.92 -26.73 -0.16 -1.16 16 19 C -0.12 -0.93 5.92 -26.73 -0.16 -1.09 16 20 C -0.12 -0.94 5.92 -26.75 -0.16 -1.10 16 21 C -0.11 -1.03 5.20 -26.75 -0.14 -1.17 16 22 C 0.08 1.63 7.44 -8.37 -0.06 1.57 16 23 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 24 H 0.06 1.31 7.03 -51.93 -0.37 0.94 16 25 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 26 H 0.08 1.57 8.10 -51.93 -0.42 1.15 16 27 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.09 1.15 6.57 -51.93 -0.34 0.81 16 29 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 30 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.64 6.57 -51.93 -0.34 0.30 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.08 1.61 8.10 -51.93 -0.42 1.19 16 43 H 0.06 1.05 7.15 -51.93 -0.37 0.68 16 LS Contribution 336.15 15.07 5.07 5.07 Total: -1.00 -29.20 336.15 -9.28 -38.49 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -7.81 Total: 0.07 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: -2.11 Total: -8.67 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: 0.09 Total: -38.06 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.09 Total: -12.05 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -4.62 Total: 15.16 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.20 -9.28 -38.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598036207.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.574 kcal (2) G-P(sol) polarization free energy of solvation -29.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds