Wall clock time and date at job start Mon Mar 30 2020 07:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86796 * 119.99913 * 2 1 4 4 H 1.48503 * 109.47374 * 269.99722 * 3 2 1 5 5 H 1.48501 * 109.47347 * 30.00048 * 3 2 1 6 6 H 1.48500 * 109.46791 * 150.00170 * 3 2 1 7 7 C 1.37871 * 119.99795 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00582 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00236 * 180.02562 * 7 2 1 10 10 C 1.53498 * 114.21161 * 180.02562 * 9 7 2 11 11 N 1.47067 * 87.98280 * 220.14721 * 10 9 7 12 12 C 1.34777 * 136.05471 * 207.07965 * 11 10 9 13 13 O 1.21279 * 120.00166 * 0.02562 * 12 11 10 14 14 C 1.50706 * 120.00142 * 179.97438 * 12 11 10 15 15 C 1.52999 * 109.46957 * 180.02562 * 14 12 11 16 16 C 1.53006 * 109.46626 * 180.02562 * 15 14 12 17 17 C 1.52996 * 109.47102 * 294.99833 * 16 15 14 18 18 C 1.52996 * 109.46951 * 180.02562 * 17 16 15 19 19 C 1.53001 * 109.47365 * 59.99890 * 18 17 16 20 20 C 1.52996 * 109.47176 * 299.99973 * 19 18 17 21 21 C 1.52997 * 109.46646 * 174.99857 * 16 15 14 22 22 C 1.47067 * 87.88709 * 27.33803 * 11 10 9 23 23 H 0.96995 * 119.99694 * 0.02562 * 1 2 3 24 24 H 1.09003 * 113.28083 * 313.06590 * 9 7 2 25 25 H 1.08993 * 113.47322 * 105.36621 * 10 9 7 26 26 H 1.09004 * 113.51450 * 334.93082 * 10 9 7 27 27 H 1.08993 * 109.46700 * 59.99973 * 14 12 11 28 28 H 1.09000 * 109.46974 * 300.00347 * 14 12 11 29 29 H 1.08993 * 109.47839 * 60.00178 * 15 14 12 30 30 H 1.09000 * 109.47160 * 299.99740 * 15 14 12 31 31 H 1.09000 * 109.47314 * 54.99967 * 16 15 14 32 32 H 1.09006 * 109.46822 * 299.99923 * 17 16 15 33 33 H 1.08997 * 109.47474 * 60.00037 * 17 16 15 34 34 H 1.08993 * 109.47243 * 299.99585 * 18 17 16 35 35 H 1.09007 * 109.46984 * 179.97438 * 18 17 16 36 36 H 1.09002 * 109.47083 * 179.97438 * 19 18 17 37 37 H 1.09000 * 109.46998 * 59.99958 * 19 18 17 38 38 H 1.09006 * 109.46822 * 300.00209 * 20 19 18 39 39 H 1.08997 * 109.47474 * 180.02562 * 20 19 18 40 40 H 1.09004 * 109.47394 * 299.99282 * 21 16 15 41 41 H 1.08990 * 109.47621 * 60.00181 * 21 16 15 42 42 H 1.09004 * 113.46270 * 87.43894 * 22 11 10 43 43 H 1.09001 * 113.46751 * 217.87254 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0014 9 6 3.5115 -1.1941 0.0000 10 6 4.1409 -2.5941 -0.0013 11 7 5.1440 -2.0873 0.9473 12 6 6.4181 -2.3899 1.2662 13 8 6.9893 -3.2919 0.6910 14 6 7.1333 -1.6066 2.3367 15 6 8.5549 -2.1479 2.5010 16 6 9.2807 -1.3531 3.5884 17 6 9.4502 0.0975 3.1324 18 6 10.1766 0.8922 4.2195 19 6 11.5527 0.2725 4.4708 20 6 11.3833 -1.1781 4.9267 21 6 10.6568 -1.9726 3.8401 22 6 4.1429 -1.1094 1.3994 23 1 -0.4849 0.8400 -0.0004 24 1 3.9427 -0.5100 -0.7308 25 1 4.5609 -2.8804 -0.9654 26 1 3.4933 -3.3625 0.4211 27 1 6.5954 -1.7051 3.2796 28 1 7.1759 -0.5556 2.0508 29 1 9.0926 -2.0491 1.5581 30 1 8.5126 -3.1990 2.7868 31 1 8.6968 -1.3789 4.5084 32 1 10.0342 0.1233 2.2124 33 1 8.4699 0.5389 2.9530 34 1 9.5930 0.8664 5.1396 35 1 10.2977 1.9256 3.8944 36 1 12.0704 0.8390 5.2449 37 1 12.1363 0.2983 3.5506 38 1 10.7996 -1.2038 5.8470 39 1 12.3636 -1.6194 5.1062 40 1 10.5361 -3.0061 4.1651 41 1 11.2408 -1.9468 2.9203 42 1 3.4953 -1.4858 2.1913 43 1 4.5647 -0.1308 1.6285 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598036207.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:23 Heat of formation + Delta-G solvation = -56.585597 kcal Electronic energy + Delta-G solvation = -20115.046312 eV Core-core repulsion = 17159.033470 eV Total energy + Delta-G solvation = -2956.012842 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.24686 -39.76648 -38.77063 -34.78836 -34.65346 -31.78716 -31.54686 -30.07008 -27.30790 -26.73849 -24.95176 -23.40829 -22.08217 -21.36397 -20.59830 -19.74106 -19.12204 -17.97569 -16.95817 -16.69778 -16.28368 -16.00367 -15.63675 -15.04664 -14.98689 -14.79062 -14.75566 -14.19742 -13.99641 -13.53674 -13.43892 -13.32366 -12.95859 -12.75721 -12.64502 -12.52849 -12.45273 -12.04527 -11.95409 -11.81817 -11.66879 -11.59813 -11.28338 -11.21701 -10.94733 -10.78835 -10.74916 -10.59762 -9.62367 -8.26851 -6.34984 1.43422 1.45462 1.55974 1.63150 2.00020 2.40149 3.04855 3.49178 3.76459 3.80445 3.93803 4.03285 4.10563 4.20858 4.28774 4.41678 4.45453 4.50743 4.55977 4.59407 4.62355 4.69228 4.69898 4.70669 4.81272 4.81374 4.83962 4.97111 5.00587 5.11407 5.20214 5.24568 5.30628 5.36514 5.37422 5.38822 5.44823 5.52929 5.61144 5.65791 6.28963 6.71339 6.89518 7.15746 7.32891 8.88770 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.026414 B = 0.003921 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.781042 B = 7139.464835 C = 7962.736163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.019 3.981 3 Si 0.942 3.058 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.227 1.227 7 C -0.515 4.515 8 H 0.039 0.961 9 C -0.014 4.014 10 C 0.110 3.890 11 N -0.648 5.648 12 C 0.525 3.475 13 O -0.598 6.598 14 C -0.126 4.126 15 C -0.091 4.091 16 C -0.080 4.080 17 C -0.119 4.119 18 C -0.119 4.119 19 C -0.120 4.120 20 C -0.117 4.117 21 C -0.115 4.115 22 C 0.099 3.901 23 H 0.268 0.732 24 H 0.066 0.934 25 H 0.061 0.939 26 H 0.075 0.925 27 H 0.108 0.892 28 H 0.107 0.893 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.077 0.923 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.057 0.943 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.060 0.940 41 H 0.056 0.944 42 H 0.086 0.914 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.593 3.435 11.042 24.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.179 4.179 3 Si 0.765 3.235 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.149 1.149 7 C -0.553 4.553 8 H 0.057 0.943 9 C -0.033 4.033 10 C -0.013 4.013 11 N -0.381 5.381 12 C 0.318 3.682 13 O -0.480 6.480 14 C -0.165 4.165 15 C -0.129 4.129 16 C -0.098 4.098 17 C -0.157 4.157 18 C -0.156 4.156 19 C -0.157 4.157 20 C -0.154 4.154 21 C -0.152 4.152 22 C -0.023 4.023 23 H 0.077 0.923 24 H 0.084 0.916 25 H 0.079 0.921 26 H 0.093 0.907 27 H 0.126 0.874 28 H 0.125 0.875 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.104 0.896 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 21.966 3.017 10.815 24.670 hybrid contribution -0.530 0.299 -0.404 0.731 sum 21.436 3.316 10.411 24.060 Atomic orbital electron populations 1.70048 1.08494 1.28406 1.51442 1.25901 0.95352 1.03251 0.93436 0.85836 0.80397 0.78236 0.79065 1.20106 1.21375 1.14917 1.20933 0.89760 0.93416 1.51171 0.94278 1.20720 0.94230 0.94112 0.94279 1.22982 0.87215 0.98595 0.92478 1.50032 1.10354 1.37526 1.40219 1.21137 0.79804 0.83432 0.83840 1.90624 1.66867 1.34263 1.56238 1.21708 0.96749 1.00786 0.97264 1.21320 0.92872 0.99382 0.99304 1.21134 0.96198 0.94692 0.97795 1.21672 1.00678 0.94687 0.98630 1.21531 0.96296 0.98920 0.98856 1.21548 0.97012 0.95908 1.01272 1.21512 1.00394 0.95357 0.98172 1.21561 0.95403 0.99083 0.99185 1.23720 0.86794 0.91886 0.99939 0.92316 0.91607 0.92092 0.90686 0.87406 0.87471 0.92742 0.92545 0.90460 0.92526 0.91673 0.91710 0.91731 0.91382 0.92397 0.91755 0.91540 0.92084 0.92501 0.89590 0.89801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.51 13.96 21.45 0.30 -55.21 16 2 C 0.02 1.02 5.47 84.65 0.46 1.48 16 3 Si 0.94 39.54 27.15 68.60 1.86 41.40 16 4 H -0.28 -11.52 7.11 99.48 0.71 -10.82 16 5 H -0.29 -12.11 7.11 99.48 0.71 -11.40 16 6 H -0.23 -8.17 5.72 99.48 0.57 -7.60 16 7 C -0.51 -26.90 9.38 25.60 0.24 -26.66 16 8 H 0.04 2.29 8.06 -2.91 -0.02 2.27 16 9 C -0.01 -0.59 2.96 -11.12 -0.03 -0.62 16 10 C 0.11 4.40 8.17 83.18 0.68 5.08 16 11 N -0.65 -23.77 3.69 -857.74 -3.16 -26.93 16 12 C 0.53 18.50 8.08 87.66 0.71 19.21 16 13 O -0.60 -25.30 16.76 -3.03 -0.05 -25.36 16 14 C -0.13 -3.10 5.28 29.85 0.16 -2.94 16 15 C -0.09 -2.09 3.97 30.60 0.12 -1.96 16 16 C -0.08 -1.38 2.19 -10.79 -0.02 -1.41 16 17 C -0.12 -1.95 4.96 30.59 0.15 -1.80 16 18 C -0.12 -1.64 5.92 30.59 0.18 -1.46 16 19 C -0.12 -1.55 5.92 30.59 0.18 -1.37 16 20 C -0.12 -1.55 5.92 30.58 0.18 -1.37 16 21 C -0.11 -1.85 5.20 30.58 0.16 -1.69 16 22 C 0.10 3.54 7.44 83.27 0.62 4.16 16 23 H 0.27 14.73 8.31 -92.71 -0.77 13.95 16 24 H 0.07 2.73 7.03 -2.39 -0.02 2.71 16 25 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 26 H 0.07 3.03 8.10 -2.38 -0.02 3.01 16 27 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.11 2.33 6.57 -2.39 -0.02 2.31 16 29 H 0.05 1.40 8.10 -2.39 -0.02 1.38 16 30 H 0.06 1.43 8.10 -2.39 -0.02 1.41 16 31 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 33 H 0.06 1.06 6.57 -2.39 -0.02 1.05 16 34 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 36 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 39 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.09 3.07 8.10 -2.38 -0.02 3.05 16 43 H 0.08 2.61 7.15 -2.39 -0.02 2.59 16 Total: -1.00 -63.56 336.15 3.55 -60.01 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: 0.81 Total: 17.43 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: 3.79 Total: -11.35 kcal Atomic # 7 Polarization: -79.28 SS G_CDS: -2.86 Total: -82.15 kcal Atomic # 8 Polarization: -25.30 SS G_CDS: -0.05 Total: -25.36 kcal Atomic # 14 Polarization: 39.54 SS G_CDS: 1.86 Total: 41.40 kcal Total: -63.56 3.55 -60.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598036207.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.429 kcal (2) G-P(sol) polarization free energy of solvation -63.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds