Wall clock time and date at job start Mon Mar 30 2020 06:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46499 * 109.47086 * 2 1 4 4 N 1.40070 * 126.04046 * 277.35130 * 3 2 1 5 5 C 1.30852 * 108.37166 * 180.02562 * 4 3 2 6 6 C 1.39754 * 108.32381 * 359.74839 * 5 4 3 7 7 C 1.50700 * 126.08924 * 180.26678 * 6 5 4 8 8 C 1.35259 * 126.05216 * 97.37635 * 3 2 1 9 9 N 1.39475 * 126.21598 * 359.97438 * 8 3 2 10 10 C 1.34774 * 120.00332 * 147.22656 * 9 8 3 11 11 O 1.21297 * 119.99585 * 353.88420 * 10 9 8 12 12 C 1.50694 * 119.99962 * 173.61478 * 10 9 8 13 13 C 1.53008 * 109.46939 * 180.27340 * 12 10 9 14 14 C 1.53002 * 109.46998 * 179.97438 * 13 12 10 15 15 C 1.50695 * 109.46786 * 180.02562 * 14 13 12 16 16 H 1.08003 * 120.00446 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99718 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00131 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99765 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46768 * 60.00177 * 19 17 15 21 21 H 1.48499 * 109.46827 * 179.97438 * 19 17 15 22 22 H 1.48490 * 109.47202 * 299.99831 * 19 17 15 23 23 H 1.08998 * 109.46907 * 60.00563 * 1 2 3 24 24 H 1.08997 * 109.46956 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46837 * 300.00205 * 1 2 3 26 26 H 1.08994 * 109.47149 * 239.99596 * 2 1 3 27 27 H 1.09007 * 109.46934 * 119.99113 * 2 1 3 28 28 H 1.08002 * 125.84168 * 180.02562 * 5 4 3 29 29 H 1.09003 * 109.47465 * 272.10097 * 7 6 5 30 30 H 1.09003 * 109.47018 * 32.10257 * 7 6 5 31 31 H 1.08999 * 109.47138 * 152.09677 * 7 6 5 32 32 H 0.97006 * 119.99600 * 327.22589 * 9 8 3 33 33 H 1.09001 * 109.47463 * 300.27323 * 12 10 9 34 34 H 1.09001 * 109.47315 * 60.27789 * 12 10 9 35 35 H 1.09001 * 109.47029 * 300.00249 * 13 12 10 36 36 H 1.09001 * 109.46750 * 60.00103 * 13 12 10 37 37 H 1.09000 * 109.47181 * 300.00393 * 14 13 12 38 38 H 1.09001 * 109.46598 * 60.00344 * 14 13 12 39 39 H 0.96998 * 119.99673 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.1565 2.2065 -1.1233 5 6 2.6205 3.3649 -0.7295 6 6 2.7893 3.3221 0.6572 7 6 3.2974 4.4448 1.5246 8 6 2.4161 2.0849 1.0845 9 7 2.4348 1.6277 2.4021 10 6 3.3826 2.0662 3.2541 11 8 4.2834 2.7702 2.8491 12 6 3.3197 1.6866 4.7111 13 6 4.5007 2.3154 5.4534 14 6 4.4365 1.9306 6.9328 15 6 5.5994 2.5504 7.6639 16 1 6.3126 3.1584 7.1272 17 6 5.7527 2.3414 9.0181 18 7 4.8845 1.6007 9.6717 19 14 7.1938 3.1103 9.9246 20 1 7.1285 4.5882 9.7948 21 1 7.1316 2.7367 11.3604 22 1 8.4665 2.6177 9.3392 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5137 0.8901 28 1 2.8322 4.2110 -1.3664 29 1 4.3853 4.4007 1.5758 30 1 2.9923 5.4003 1.0978 31 1 2.8821 4.3457 2.5274 32 1 1.7657 0.9942 2.7051 33 1 2.3859 2.0490 5.1411 34 1 3.3667 0.6018 4.8064 35 1 5.4345 1.9531 5.0234 36 1 4.4537 3.4002 5.3581 37 1 3.5027 2.2933 7.3624 38 1 4.4833 0.8458 7.0283 39 1 4.9922 1.4540 10.6244 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598200600.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:03 Heat of formation + Delta-G solvation = 27.441834 kcal Electronic energy + Delta-G solvation = -19751.118492 eV Core-core repulsion = 16695.209009 eV Total energy + Delta-G solvation = -3055.909483 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.65263 -39.45905 -35.16398 -34.64597 -34.21156 -32.17570 -31.17942 -29.82309 -27.91152 -26.12677 -24.08306 -23.80244 -21.69879 -20.97690 -19.94494 -19.39779 -17.85822 -16.90760 -16.18620 -16.03285 -15.40192 -14.95280 -14.67619 -14.43767 -13.92795 -13.73112 -13.51036 -13.15390 -12.82081 -12.38549 -12.31863 -12.09583 -11.96475 -11.82530 -11.63817 -11.43507 -10.88385 -10.81333 -10.70249 -10.57848 -10.37402 -9.74162 -9.72750 -9.35447 -9.09156 -9.00247 -8.34746 -7.98365 -6.00651 -4.02295 1.66789 2.08607 2.62680 2.96780 3.08483 3.35105 3.38720 3.42455 4.23966 4.46835 4.62341 4.76880 4.83208 4.88575 5.16277 5.29216 5.33561 5.35611 5.49476 5.57004 5.57516 5.69415 5.78348 5.84138 6.09319 6.12285 6.29258 6.43585 6.63638 6.74505 6.83571 6.95437 7.09539 7.18291 7.65785 7.69705 7.77921 7.99291 8.19532 8.42737 9.04467 9.61940 11.10778 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.035674 B = 0.003475 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.701849 B = 8055.235176 C = 8659.960258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.128 3.872 3 N -0.385 5.385 4 N -0.294 5.294 5 C 0.061 3.939 6 C -0.232 4.232 7 C -0.054 4.054 8 C 0.306 3.694 9 N -0.662 5.662 10 C 0.511 3.489 11 O -0.493 6.493 12 C -0.133 4.133 13 C -0.095 4.095 14 C 0.021 3.979 15 C -0.520 4.520 16 H 0.056 0.944 17 C 0.056 3.944 18 N -0.898 5.898 19 Si 0.892 3.108 20 H -0.276 1.276 21 H -0.288 1.288 22 H -0.277 1.277 23 H 0.067 0.933 24 H 0.076 0.924 25 H 0.059 0.941 26 H 0.095 0.905 27 H 0.089 0.911 28 H 0.184 0.816 29 H 0.077 0.923 30 H 0.047 0.953 31 H 0.052 0.948 32 H 0.409 0.591 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.016 0.984 38 H 0.016 0.984 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.136 -2.527 -18.383 21.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.006 3.994 3 N -0.173 5.173 4 N -0.115 5.115 5 C -0.125 4.125 6 C -0.246 4.246 7 C -0.112 4.112 8 C 0.087 3.913 9 N -0.313 5.313 10 C 0.300 3.700 11 O -0.364 6.364 12 C -0.173 4.173 13 C -0.133 4.133 14 C -0.016 4.016 15 C -0.558 4.558 16 H 0.074 0.926 17 C -0.144 4.144 18 N -0.537 5.537 19 Si 0.720 3.280 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 H 0.086 0.914 24 H 0.095 0.905 25 H 0.078 0.922 26 H 0.113 0.887 27 H 0.107 0.893 28 H 0.201 0.799 29 H 0.095 0.905 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.245 0.755 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.035 0.965 38 H 0.034 0.966 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.916 -2.909 -19.406 21.985 hybrid contribution 0.552 0.301 1.377 1.514 sum -9.364 -2.608 -18.028 20.482 Atomic orbital electron populations 1.22196 0.94232 1.03049 1.03323 1.21622 0.95287 0.78137 1.04341 1.48641 1.53563 1.11823 1.03315 1.77360 1.24908 1.02981 1.06293 1.23575 0.98513 0.96130 0.94275 1.19703 1.15099 0.95013 0.94754 1.20125 1.01538 0.92833 0.96711 1.17708 1.01416 0.90908 0.81228 1.43221 1.33048 1.48369 1.06684 1.21546 0.80472 0.79294 0.88702 1.90775 1.32917 1.34540 1.78188 1.21878 1.03805 1.03196 0.88408 1.21487 0.94364 0.99881 0.97605 1.19122 0.97274 0.96751 0.88467 1.21219 1.10226 1.31011 0.93340 0.92578 1.25016 0.96382 0.95312 0.97738 1.69947 1.35968 1.38930 1.08880 0.86647 0.82981 0.79802 0.78539 1.20183 1.21333 1.20212 0.91376 0.90473 0.92150 0.88702 0.89270 0.79933 0.90496 0.93420 0.92895 0.75549 0.88844 0.89014 0.92518 0.92413 0.96536 0.96593 0.92978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.10 10.24 37.16 0.38 -0.72 16 2 C 0.13 1.03 7.12 -4.04 -0.03 1.00 16 3 N -0.39 -4.65 3.62 -60.39 -0.22 -4.87 16 4 N -0.29 -3.93 12.56 30.60 0.38 -3.54 16 5 C 0.06 0.77 11.95 -17.40 -0.21 0.56 16 6 C -0.23 -3.28 5.78 -104.82 -0.61 -3.89 16 7 C -0.05 -0.77 8.28 36.01 0.30 -0.47 16 8 C 0.31 4.11 7.31 -153.16 -1.12 2.98 16 9 N -0.66 -7.84 5.17 -11.46 -0.06 -7.89 16 10 C 0.51 7.57 6.78 -10.99 -0.07 7.50 16 11 O -0.49 -8.94 11.41 5.54 0.06 -8.87 16 12 C -0.13 -1.98 5.70 -27.88 -0.16 -2.14 16 13 C -0.10 -1.93 4.44 -26.73 -0.12 -2.05 16 14 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 15 C -0.52 -14.68 9.11 -34.44 -0.31 -15.00 16 16 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -26.64 13.29 55.43 0.74 -25.90 16 19 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.09 0.58 7.82 -51.93 -0.41 0.17 16 28 H 0.18 1.71 8.06 -52.49 -0.42 1.28 16 29 H 0.08 1.22 6.94 -51.93 -0.36 0.86 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.81 6.54 -51.93 -0.34 0.47 16 32 H 0.41 3.40 8.69 -40.82 -0.35 3.05 16 33 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 36 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 37 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 327.64 15.07 4.94 4.94 Total: -1.00 -33.73 327.64 -7.43 -41.16 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -6.07 Total: -1.37 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: -2.19 Total: -10.33 kcal Atomic # 7 Polarization: -43.05 SS G_CDS: 0.84 Total: -42.21 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.06 Total: -8.87 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.73 -7.43 -41.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598200600.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.605 kcal (2) G-P(sol) polarization free energy of solvation -33.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds