Wall clock time and date at job start Mon Mar 30 2020 06:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46499 * 109.47086 * 2 1 4 4 N 1.40070 * 126.04046 * 277.35130 * 3 2 1 5 5 C 1.30852 * 108.37166 * 180.02562 * 4 3 2 6 6 C 1.39754 * 108.32381 * 359.74839 * 5 4 3 7 7 C 1.50700 * 126.08924 * 180.26678 * 6 5 4 8 8 C 1.35259 * 126.05216 * 97.37635 * 3 2 1 9 9 N 1.39475 * 126.21598 * 359.97438 * 8 3 2 10 10 C 1.34774 * 120.00332 * 147.22656 * 9 8 3 11 11 O 1.21297 * 119.99585 * 353.88420 * 10 9 8 12 12 C 1.50694 * 119.99962 * 173.61478 * 10 9 8 13 13 C 1.53008 * 109.46939 * 180.27340 * 12 10 9 14 14 C 1.53002 * 109.46998 * 179.97438 * 13 12 10 15 15 C 1.50695 * 109.46786 * 180.02562 * 14 13 12 16 16 H 1.08003 * 120.00446 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99718 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00131 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99765 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46768 * 60.00177 * 19 17 15 21 21 H 1.48499 * 109.46827 * 179.97438 * 19 17 15 22 22 H 1.48490 * 109.47202 * 299.99831 * 19 17 15 23 23 H 1.08998 * 109.46907 * 60.00563 * 1 2 3 24 24 H 1.08997 * 109.46956 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46837 * 300.00205 * 1 2 3 26 26 H 1.08994 * 109.47149 * 239.99596 * 2 1 3 27 27 H 1.09007 * 109.46934 * 119.99113 * 2 1 3 28 28 H 1.08002 * 125.84168 * 180.02562 * 5 4 3 29 29 H 1.09003 * 109.47465 * 272.10097 * 7 6 5 30 30 H 1.09003 * 109.47018 * 32.10257 * 7 6 5 31 31 H 1.08999 * 109.47138 * 152.09677 * 7 6 5 32 32 H 0.97006 * 119.99600 * 327.22589 * 9 8 3 33 33 H 1.09001 * 109.47463 * 300.27323 * 12 10 9 34 34 H 1.09001 * 109.47315 * 60.27789 * 12 10 9 35 35 H 1.09001 * 109.47029 * 300.00249 * 13 12 10 36 36 H 1.09001 * 109.46750 * 60.00103 * 13 12 10 37 37 H 1.09000 * 109.47181 * 300.00393 * 14 13 12 38 38 H 1.09001 * 109.46598 * 60.00344 * 14 13 12 39 39 H 0.96998 * 119.99673 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.1565 2.2065 -1.1233 5 6 2.6205 3.3649 -0.7295 6 6 2.7893 3.3221 0.6572 7 6 3.2974 4.4448 1.5246 8 6 2.4161 2.0849 1.0845 9 7 2.4348 1.6277 2.4021 10 6 3.3826 2.0662 3.2541 11 8 4.2834 2.7702 2.8491 12 6 3.3197 1.6866 4.7111 13 6 4.5007 2.3154 5.4534 14 6 4.4365 1.9306 6.9328 15 6 5.5994 2.5504 7.6639 16 1 6.3126 3.1584 7.1272 17 6 5.7527 2.3414 9.0181 18 7 4.8845 1.6007 9.6717 19 14 7.1938 3.1103 9.9246 20 1 7.1285 4.5882 9.7948 21 1 7.1316 2.7367 11.3604 22 1 8.4665 2.6177 9.3392 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5137 0.8901 28 1 2.8322 4.2110 -1.3664 29 1 4.3853 4.4007 1.5758 30 1 2.9923 5.4003 1.0978 31 1 2.8821 4.3457 2.5274 32 1 1.7657 0.9942 2.7051 33 1 2.3859 2.0490 5.1411 34 1 3.3667 0.6018 4.8064 35 1 5.4345 1.9531 5.0234 36 1 4.4537 3.4002 5.3581 37 1 3.5027 2.2933 7.3624 38 1 4.4833 0.8458 7.0283 39 1 4.9922 1.4540 10.6244 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598200600.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:03 Heat of formation + Delta-G solvation = 6.542061 kcal Electronic energy + Delta-G solvation = -19752.024774 eV Core-core repulsion = 16695.209009 eV Total energy + Delta-G solvation = -3056.815765 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.64332 -40.62495 -36.26848 -36.05262 -35.39861 -34.05578 -32.21679 -30.82214 -29.52914 -27.18867 -25.85934 -24.54810 -23.11389 -22.02026 -21.40469 -20.45456 -18.89296 -18.38034 -17.91550 -17.14683 -16.49447 -16.44110 -15.90054 -15.56312 -15.09541 -14.93627 -14.57423 -14.26776 -14.00956 -13.82165 -13.74548 -13.26512 -13.02267 -12.96141 -12.85463 -12.57967 -12.49266 -12.42731 -12.26251 -11.88963 -11.51730 -11.47731 -11.39495 -11.23343 -10.77862 -10.51771 -9.93705 -9.02598 -8.18629 -6.27869 0.64404 1.15975 1.41445 1.43575 1.51591 1.55948 1.91091 2.14365 2.43249 3.14907 3.51395 3.68211 4.04430 4.07772 4.17403 4.27575 4.28795 4.31415 4.42212 4.66616 4.74125 4.80237 4.87342 4.93998 4.97740 4.98469 5.11757 5.18170 5.22843 5.25994 5.35190 5.56764 5.73363 5.78721 5.89435 6.00912 6.21987 6.30543 6.72785 6.87943 7.09143 7.40722 8.92533 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.035674 B = 0.003475 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.701849 B = 8055.235176 C = 8659.960258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.116 3.884 3 N -0.381 5.381 4 N -0.310 5.310 5 C 0.059 3.941 6 C -0.258 4.258 7 C -0.045 4.045 8 C 0.296 3.704 9 N -0.643 5.643 10 C 0.518 3.482 11 O -0.531 6.531 12 C -0.122 4.122 13 C -0.082 4.082 14 C 0.026 3.974 15 C -0.547 4.547 16 H 0.052 0.948 17 C 0.004 3.996 18 N -0.929 5.929 19 Si 0.958 3.042 20 H -0.269 1.269 21 H -0.280 1.280 22 H -0.270 1.270 23 H 0.053 0.947 24 H 0.102 0.898 25 H 0.058 0.942 26 H 0.102 0.898 27 H 0.108 0.892 28 H 0.210 0.790 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.037 0.963 32 H 0.427 0.573 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.043 0.957 36 H 0.044 0.956 37 H 0.002 0.998 38 H 0.002 0.998 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.706 -3.095 -18.925 21.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.004 4.004 3 N -0.169 5.169 4 N -0.133 5.133 5 C -0.126 4.126 6 C -0.272 4.272 7 C -0.102 4.102 8 C 0.076 3.924 9 N -0.295 5.295 10 C 0.307 3.693 11 O -0.404 6.404 12 C -0.162 4.162 13 C -0.121 4.121 14 C -0.012 4.012 15 C -0.585 4.585 16 H 0.070 0.930 17 C -0.194 4.194 18 N -0.569 5.569 19 Si 0.783 3.217 20 H -0.195 1.195 21 H -0.205 1.205 22 H -0.195 1.195 23 H 0.072 0.928 24 H 0.121 0.879 25 H 0.077 0.923 26 H 0.120 0.880 27 H 0.126 0.874 28 H 0.226 0.774 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.056 0.944 32 H 0.267 0.733 33 H 0.132 0.868 34 H 0.134 0.866 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.021 0.979 38 H 0.021 0.979 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.527 -3.514 -19.970 22.847 hybrid contribution 0.690 0.436 1.514 1.720 sum -9.837 -3.078 -18.456 21.139 Atomic orbital electron populations 1.22143 0.92887 1.04466 1.02490 1.22025 0.96400 0.76327 1.05639 1.48955 1.52813 1.12744 1.02429 1.77319 1.25357 1.03463 1.07115 1.23990 0.97824 0.96744 0.94048 1.19926 1.16117 0.95554 0.95606 1.19967 0.99925 0.94175 0.96166 1.17814 1.01592 0.91181 0.81840 1.42856 1.32639 1.48052 1.05947 1.21355 0.80408 0.78770 0.88785 1.90785 1.34637 1.36313 1.78693 1.21677 1.02164 1.04253 0.88062 1.21179 0.96285 0.99381 0.95208 1.19015 0.95510 0.95467 0.91166 1.21680 1.11290 1.31337 0.94199 0.92994 1.25868 0.99129 0.95740 0.98646 1.70050 1.37621 1.39959 1.09288 0.85605 0.79623 0.79100 0.77374 1.19455 1.20548 1.19502 0.92809 0.87908 0.92315 0.88014 0.87426 0.77392 0.92738 0.91503 0.94432 0.73330 0.86755 0.86615 0.93850 0.93676 0.97928 0.97936 0.92718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 10.24 71.98 0.74 -0.98 16 2 C 0.12 1.60 7.12 86.38 0.62 2.21 16 3 N -0.38 -8.59 3.62 -344.98 -1.25 -9.84 16 4 N -0.31 -7.91 12.56 -57.09 -0.72 -8.62 16 5 C 0.06 1.43 11.95 85.21 1.02 2.45 16 6 C -0.26 -7.13 5.78 -19.99 -0.12 -7.25 16 7 C -0.04 -1.27 8.28 71.24 0.59 -0.68 16 8 C 0.30 7.54 7.31 131.32 0.96 8.50 16 9 N -0.64 -14.05 5.17 -308.56 -1.59 -15.65 16 10 C 0.52 14.79 6.78 87.66 0.59 15.39 16 11 O -0.53 -19.30 11.41 -3.08 -0.04 -19.33 16 12 C -0.12 -3.46 5.70 29.85 0.17 -3.29 16 13 C -0.08 -3.34 4.44 30.60 0.14 -3.21 16 14 C 0.03 1.29 4.97 29.85 0.15 1.44 16 15 C -0.55 -31.27 9.11 25.60 0.23 -31.04 16 16 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 17 C 0.00 0.24 5.46 84.66 0.46 0.70 16 18 N -0.93 -55.34 13.29 21.45 0.28 -55.05 16 19 Si 0.96 44.42 29.54 68.60 2.03 46.45 16 20 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 21 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 22 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 23 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 24 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 25 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.11 1.08 7.82 -2.38 -0.02 1.06 16 28 H 0.21 3.58 8.06 -2.91 -0.02 3.56 16 29 H 0.05 1.78 6.94 -2.39 -0.02 1.76 16 30 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.04 1.15 6.54 -2.39 -0.02 1.13 16 32 H 0.43 5.93 8.69 -92.70 -0.81 5.13 16 33 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 34 H 0.12 2.77 8.14 -2.39 -0.02 2.75 16 35 H 0.04 1.85 8.10 -2.39 -0.02 1.83 16 36 H 0.04 1.92 8.10 -2.39 -0.02 1.90 16 37 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 38 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 39 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -73.23 327.64 4.50 -68.74 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: 0.23 Total: 9.06 kcal Atomic # 6 Polarization: -21.30 SS G_CDS: 5.55 Total: -15.75 kcal Atomic # 7 Polarization: -85.88 SS G_CDS: -3.28 Total: -89.16 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: -0.04 Total: -19.33 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -73.23 4.50 -68.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598200600.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.277 kcal (2) G-P(sol) polarization free energy of solvation -73.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds