Wall clock time and date at job start Mon Mar 30 2020 07:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48494 * 109.47178 * 29.99723 * 3 2 1 6 6 H 1.48500 * 109.47075 * 149.99970 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.46912 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99985 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00161 * 180.02562 * 11 10 9 14 14 C 1.46926 * 120.62694 * 359.97438 * 13 11 10 15 15 C 1.53194 * 108.77757 * 233.58761 * 14 13 11 16 16 C 1.53041 * 109.31182 * 305.36758 * 15 14 13 17 17 C 1.53041 * 109.53878 * 61.36234 * 16 15 14 18 18 H 1.09006 * 109.49790 * 58.58256 * 17 16 15 19 19 C 1.52993 * 109.49976 * 178.64989 * 17 16 15 20 20 C 1.53788 * 113.61565 * 277.49739 * 19 17 16 21 21 C 1.53778 * 87.08067 * 220.01901 * 20 19 17 22 22 C 1.53781 * 87.08343 * 25.43129 * 21 20 19 23 23 C 1.46922 * 120.63244 * 179.72194 * 13 11 10 24 24 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 26 26 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 27 27 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 28 28 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 29 29 H 1.09004 * 109.58973 * 353.37467 * 14 13 11 30 30 H 1.09005 * 109.58614 * 113.66200 * 14 13 11 31 31 H 1.08997 * 109.49594 * 65.31573 * 15 14 13 32 32 H 1.08999 * 109.49706 * 185.41576 * 15 14 13 33 33 H 1.09003 * 109.46015 * 181.38272 * 16 15 14 34 34 H 1.08993 * 109.45972 * 301.34453 * 16 15 14 35 35 H 1.08995 * 112.85178 * 48.80245 * 19 17 16 36 36 H 1.08998 * 113.61525 * 334.57044 * 20 19 17 37 37 H 1.09000 * 113.61195 * 105.46812 * 20 19 17 38 38 H 1.08998 * 113.61604 * 270.88129 * 21 20 19 39 39 H 1.08999 * 113.61537 * 139.98481 * 21 20 19 40 40 H 1.08993 * 113.61528 * 220.01757 * 22 21 20 41 41 H 1.09001 * 113.68385 * 89.12758 * 22 21 20 42 42 H 1.09002 * 109.58436 * 246.19706 * 23 13 11 43 43 H 1.09002 * 109.58650 * 6.61866 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 6 1.4918 -4.9672 0.0020 12 8 0.2791 -4.9672 0.0030 13 7 2.1657 -6.1344 0.0024 14 6 3.6349 -6.1505 0.0018 15 6 4.1181 -7.0175 -1.1652 16 6 3.4743 -8.4025 -1.0671 17 6 1.9529 -8.2677 -1.1630 18 1 1.6888 -7.7883 -2.1058 19 6 1.3122 -9.6555 -1.0987 20 6 1.2996 -10.3914 -2.4491 21 6 -0.1133 -10.8755 -2.0828 22 6 -0.2229 -9.6300 -1.1875 23 6 1.4452 -7.4148 0.0091 24 1 -0.4850 0.8400 -0.0004 25 1 0.6241 -2.5575 -0.8880 26 1 0.6247 -2.5564 0.8919 27 1 2.8714 -3.6047 -0.8890 28 1 2.8726 -3.6039 0.8910 29 1 4.0115 -5.1345 -0.1175 30 1 3.9962 -6.5661 0.9425 31 1 3.8336 -6.5500 -2.1078 32 1 5.2026 -7.1164 -1.1202 33 1 3.8355 -9.0293 -1.8825 34 1 3.7389 -8.8592 -0.1135 35 1 1.6919 -10.2592 -0.2746 36 1 1.3228 -9.7238 -3.3104 37 1 2.0331 -11.1949 -2.5152 38 1 -0.1233 -11.8140 -1.5285 39 1 -0.8076 -10.8718 -2.9231 40 1 -0.7185 -9.8190 -0.2354 41 1 -0.6160 -8.7536 -1.7028 42 1 1.6312 -7.9338 0.9493 43 1 0.3765 -7.2333 -0.1053 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598395906.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:51:36 Heat of formation + Delta-G solvation = -44.858491 kcal Electronic energy + Delta-G solvation = -20443.904658 eV Core-core repulsion = 17488.400342 eV Total energy + Delta-G solvation = -2955.504317 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.19268 -38.83269 -36.70055 -33.49441 -32.72423 -31.47184 -30.61048 -26.52997 -25.84065 -25.39482 -24.34796 -22.35179 -21.55397 -20.19672 -19.57768 -18.33110 -17.01098 -15.91442 -15.80106 -15.35771 -15.07761 -14.82727 -14.42520 -14.34194 -13.98359 -13.29267 -13.11568 -12.85196 -12.61564 -12.57136 -12.18768 -12.06109 -11.87824 -11.42665 -11.21057 -11.01666 -10.99421 -10.90640 -10.77920 -10.59326 -10.56320 -10.27189 -10.02918 -9.92898 -9.57130 -9.13637 -8.93197 -8.34503 -8.26874 -5.93949 -3.98304 3.26612 3.34425 3.35586 3.40877 3.43638 4.33974 4.45907 4.48719 4.52214 4.67149 4.84646 4.86887 4.91566 5.14246 5.29989 5.32670 5.40606 5.40862 5.52894 5.54762 5.59467 5.63717 5.67475 5.73041 5.79898 5.81446 5.83902 5.92326 5.99292 6.11514 6.17781 6.24425 6.25686 6.26903 6.42487 6.81025 6.95864 7.76759 7.82944 7.89393 8.09866 8.41133 8.80636 9.10319 9.65033 11.17029 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.033918 B = 0.003736 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.328190 B = 7493.829178 C = 8026.191084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.526 4.526 8 H 0.055 0.945 9 C 0.037 3.963 10 C -0.128 4.128 11 C 0.512 3.488 12 O -0.536 6.536 13 N -0.625 5.625 14 C 0.108 3.892 15 C -0.136 4.136 16 C -0.111 4.111 17 C -0.091 4.091 18 H 0.074 0.926 19 C -0.103 4.103 20 C -0.134 4.134 21 C -0.144 4.144 22 C -0.139 4.139 23 C 0.118 3.882 24 H 0.261 0.739 25 H 0.023 0.977 26 H 0.023 0.977 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.091 0.909 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.063 0.937 38 H 0.077 0.923 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.084 0.916 42 H 0.058 0.942 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.410 -21.866 -2.695 23.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.565 4.565 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.168 4.168 11 C 0.302 3.698 12 O -0.411 6.411 13 N -0.361 5.361 14 C -0.015 4.015 15 C -0.174 4.174 16 C -0.148 4.148 17 C -0.111 4.111 18 H 0.093 0.907 19 C -0.121 4.121 20 C -0.172 4.172 21 C -0.181 4.181 22 C -0.176 4.176 23 C -0.005 4.005 24 H 0.070 0.930 25 H 0.041 0.959 26 H 0.042 0.958 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.109 0.891 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.107 0.893 36 H 0.098 0.902 37 H 0.082 0.918 38 H 0.095 0.905 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.102 0.898 42 H 0.076 0.924 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.579 -21.712 -2.680 22.844 hybrid contribution 0.572 0.851 -0.008 1.026 sum 7.151 -20.861 -2.689 22.216 Atomic orbital electron populations 1.69999 1.06053 1.26545 1.50241 1.25027 0.94821 0.99206 0.95341 0.86596 0.79778 0.83551 0.78050 1.20684 1.21234 1.19887 1.21224 0.92899 0.91028 1.51313 0.92639 1.18904 0.93188 0.89390 0.98576 1.21874 1.00698 0.92060 1.02177 1.21571 0.88406 0.85517 0.74260 1.90648 1.14427 1.87197 1.48835 1.48291 1.06463 1.05883 1.75448 1.21687 0.80201 1.01648 0.98008 1.21931 1.00150 0.95984 0.99373 1.21523 0.94740 0.96760 1.01816 1.21611 0.95198 0.94738 0.99524 0.90743 1.22529 0.95870 0.95678 0.98063 1.22933 0.97057 0.99791 0.97411 1.22812 0.97401 0.98011 0.99918 1.22952 0.96021 0.98425 1.00226 1.21556 0.98364 0.83619 0.97000 0.92970 0.95884 0.95848 0.90361 0.90356 0.89095 0.91894 0.91397 0.90904 0.91924 0.92004 0.89326 0.90154 0.91812 0.90453 0.91636 0.91506 0.89787 0.92377 0.89114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.72 13.29 55.43 0.74 -26.98 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.53 -15.11 9.11 -34.44 -0.31 -15.42 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 10 C -0.13 -2.69 3.99 -27.88 -0.11 -2.80 16 11 C 0.51 10.39 7.70 -10.98 -0.08 10.30 16 12 O -0.54 -13.08 15.39 5.56 0.09 -12.99 16 13 N -0.63 -9.62 2.97 -172.52 -0.51 -10.14 16 14 C 0.11 1.27 6.34 -3.71 -0.02 1.25 16 15 C -0.14 -1.32 6.08 -26.61 -0.16 -1.49 16 16 C -0.11 -1.01 5.16 -26.69 -0.14 -1.14 16 17 C -0.09 -0.97 2.10 -90.30 -0.19 -1.16 16 18 H 0.07 0.91 7.95 -51.93 -0.41 0.50 16 19 C -0.10 -0.92 3.13 -89.81 -0.28 -1.20 16 20 C -0.13 -1.10 7.63 -25.92 -0.20 -1.30 16 21 C -0.14 -1.17 8.08 -25.92 -0.21 -1.38 16 22 C -0.14 -1.32 6.82 -25.92 -0.18 -1.50 16 23 C 0.12 1.58 5.44 -3.51 -0.02 1.56 16 24 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 25 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 26 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 27 H 0.08 1.51 7.69 -51.93 -0.40 1.11 16 28 H 0.08 1.51 7.94 -51.93 -0.41 1.10 16 29 H 0.09 1.09 5.93 -51.93 -0.31 0.78 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.08 0.69 7.96 -51.93 -0.41 0.28 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.08 0.92 8.10 -51.93 -0.42 0.50 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.09 1.43 6.54 -51.93 -0.34 1.09 16 LS Contribution 337.72 15.07 5.09 5.09 Total: -1.00 -33.31 337.72 -9.48 -42.79 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -7.74 Total: -2.77 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: -2.12 Total: -11.80 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: 0.22 Total: -37.12 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: 0.09 Total: -12.99 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.31 -9.48 -42.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598395906.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.069 kcal (2) G-P(sol) polarization free energy of solvation -33.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds