Wall clock time and date at job start Mon Mar 30 2020 07:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48494 * 109.47178 * 29.99723 * 3 2 1 6 6 H 1.48500 * 109.47075 * 149.99970 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.46912 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99985 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00161 * 180.02562 * 11 10 9 14 14 C 1.46926 * 120.62694 * 359.97438 * 13 11 10 15 15 C 1.53194 * 108.77757 * 233.58761 * 14 13 11 16 16 C 1.53041 * 109.31182 * 305.36758 * 15 14 13 17 17 C 1.53041 * 109.53878 * 61.36234 * 16 15 14 18 18 H 1.09006 * 109.49790 * 58.58256 * 17 16 15 19 19 C 1.52993 * 109.49976 * 178.64989 * 17 16 15 20 20 C 1.53788 * 113.61565 * 277.49739 * 19 17 16 21 21 C 1.53778 * 87.08067 * 220.01901 * 20 19 17 22 22 C 1.53781 * 87.08343 * 25.43129 * 21 20 19 23 23 C 1.46922 * 120.63244 * 179.72194 * 13 11 10 24 24 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 26 26 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 27 27 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 28 28 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 29 29 H 1.09004 * 109.58973 * 353.37467 * 14 13 11 30 30 H 1.09005 * 109.58614 * 113.66200 * 14 13 11 31 31 H 1.08997 * 109.49594 * 65.31573 * 15 14 13 32 32 H 1.08999 * 109.49706 * 185.41576 * 15 14 13 33 33 H 1.09003 * 109.46015 * 181.38272 * 16 15 14 34 34 H 1.08993 * 109.45972 * 301.34453 * 16 15 14 35 35 H 1.08995 * 112.85178 * 48.80245 * 19 17 16 36 36 H 1.08998 * 113.61525 * 334.57044 * 20 19 17 37 37 H 1.09000 * 113.61195 * 105.46812 * 20 19 17 38 38 H 1.08998 * 113.61604 * 270.88129 * 21 20 19 39 39 H 1.08999 * 113.61537 * 139.98481 * 21 20 19 40 40 H 1.08993 * 113.61528 * 220.01757 * 22 21 20 41 41 H 1.09001 * 113.68385 * 89.12758 * 22 21 20 42 42 H 1.09002 * 109.58436 * 246.19706 * 23 13 11 43 43 H 1.09002 * 109.58650 * 6.61866 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 6 1.4918 -4.9672 0.0020 12 8 0.2791 -4.9672 0.0030 13 7 2.1657 -6.1344 0.0024 14 6 3.6349 -6.1505 0.0018 15 6 4.1181 -7.0175 -1.1652 16 6 3.4743 -8.4025 -1.0671 17 6 1.9529 -8.2677 -1.1630 18 1 1.6888 -7.7883 -2.1058 19 6 1.3122 -9.6555 -1.0987 20 6 1.2996 -10.3914 -2.4491 21 6 -0.1133 -10.8755 -2.0828 22 6 -0.2229 -9.6300 -1.1875 23 6 1.4452 -7.4148 0.0091 24 1 -0.4850 0.8400 -0.0004 25 1 0.6241 -2.5575 -0.8880 26 1 0.6247 -2.5564 0.8919 27 1 2.8714 -3.6047 -0.8890 28 1 2.8726 -3.6039 0.8910 29 1 4.0115 -5.1345 -0.1175 30 1 3.9962 -6.5661 0.9425 31 1 3.8336 -6.5500 -2.1078 32 1 5.2026 -7.1164 -1.1202 33 1 3.8355 -9.0293 -1.8825 34 1 3.7389 -8.8592 -0.1135 35 1 1.6919 -10.2592 -0.2746 36 1 1.3228 -9.7238 -3.3104 37 1 2.0331 -11.1949 -2.5152 38 1 -0.1233 -11.8140 -1.5285 39 1 -0.8076 -10.8718 -2.9231 40 1 -0.7185 -9.8190 -0.2354 41 1 -0.6160 -8.7536 -1.7028 42 1 1.6312 -7.9338 0.9493 43 1 0.3765 -7.2333 -0.1053 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598395906.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:51:35 Heat of formation + Delta-G solvation = -64.278391 kcal Electronic energy + Delta-G solvation = -20444.746769 eV Core-core repulsion = 17488.400342 eV Total energy + Delta-G solvation = -2956.346427 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.35688 -39.93273 -37.86465 -35.61684 -33.95967 -32.97396 -32.01706 -28.20178 -26.79793 -26.29698 -25.69247 -23.39459 -23.20195 -21.28603 -20.35835 -19.66504 -18.82527 -17.68666 -16.85832 -16.69215 -16.42925 -16.23544 -15.70013 -15.37960 -15.00352 -14.64694 -14.49511 -14.18904 -13.76130 -13.74261 -13.41463 -13.31302 -13.19800 -12.82492 -12.71496 -12.49652 -12.14553 -12.09778 -11.94545 -11.84148 -11.58790 -11.53035 -11.36374 -11.31188 -11.09504 -10.82404 -10.58005 -10.57121 -9.56650 -8.18574 -6.33234 1.41606 1.44870 1.55842 1.67441 2.07449 2.43006 3.14173 3.53455 3.68336 3.76985 3.80915 3.98630 4.05046 4.09969 4.14147 4.35237 4.39495 4.45895 4.49030 4.51913 4.62181 4.72831 4.85641 4.87018 4.88972 4.92557 4.96112 5.01826 5.08611 5.10807 5.14257 5.18111 5.31679 5.40873 5.46783 5.48520 5.60086 5.66646 5.68891 5.83636 6.16152 6.42719 6.85004 7.26545 7.37218 8.94313 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.033918 B = 0.003736 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.328190 B = 7493.829178 C = 8026.191084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.008 4.008 3 Si 0.976 3.024 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.254 1.254 7 C -0.543 4.543 8 H 0.077 0.923 9 C 0.043 3.957 10 C -0.114 4.114 11 C 0.507 3.493 12 O -0.594 6.594 13 N -0.613 5.613 14 C 0.097 3.903 15 C -0.132 4.132 16 C -0.106 4.106 17 C -0.084 4.084 18 H 0.051 0.949 19 C -0.096 4.096 20 C -0.129 4.129 21 C -0.138 4.138 22 C -0.151 4.151 23 C 0.114 3.886 24 H 0.263 0.737 25 H -0.021 1.021 26 H -0.019 1.019 27 H 0.101 0.899 28 H 0.102 0.898 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.052 0.948 32 H 0.103 0.897 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.107 0.893 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.058 0.942 42 H 0.078 0.922 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.077 -23.239 -2.583 25.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.205 4.205 3 Si 0.800 3.200 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.177 1.177 7 C -0.581 4.581 8 H 0.095 0.905 9 C 0.006 3.994 10 C -0.154 4.154 11 C 0.297 3.703 12 O -0.474 6.474 13 N -0.346 5.346 14 C -0.025 4.025 15 C -0.170 4.170 16 C -0.144 4.144 17 C -0.103 4.103 18 H 0.070 0.930 19 C -0.115 4.115 20 C -0.166 4.166 21 C -0.176 4.176 22 C -0.188 4.188 23 C -0.008 4.008 24 H 0.072 0.928 25 H -0.003 1.003 26 H -0.001 1.001 27 H 0.119 0.881 28 H 0.121 0.879 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.071 0.929 32 H 0.121 0.879 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.125 0.875 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.111 0.889 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.077 0.923 42 H 0.096 0.904 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 10.315 -23.140 -2.574 25.466 hybrid contribution -0.604 1.210 -0.031 1.353 sum 9.711 -21.930 -2.605 24.125 Atomic orbital electron populations 1.70186 1.08400 1.27842 1.51428 1.26175 0.95739 1.04061 0.94562 0.85289 0.78684 0.77510 0.78561 1.19651 1.21170 1.17736 1.21702 0.94001 0.91490 1.50877 0.90498 1.18685 0.93662 0.92582 0.94486 1.21623 0.99260 0.90202 1.04320 1.21426 0.87654 0.86850 0.74375 1.90626 1.16742 1.88076 1.51991 1.48299 1.08333 1.05012 1.72982 1.22081 0.77323 1.02672 1.00417 1.21928 1.01947 0.95636 0.97456 1.21528 0.92621 0.96757 1.03444 1.21528 0.97041 0.94873 0.96846 0.93038 1.22544 0.94774 0.94842 0.99340 1.22888 0.97418 0.99896 0.96404 1.22822 0.97463 0.97734 0.99562 1.22967 0.96965 0.98490 1.00397 1.21717 0.96633 0.83120 0.99369 0.92841 1.00252 1.00104 0.88131 0.87946 0.89102 0.89320 0.92873 0.87851 0.90200 0.90306 0.87531 0.91007 0.89950 0.88899 0.91787 0.91627 0.92277 0.90365 0.92400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.65 13.29 21.45 0.28 -60.36 16 2 C -0.01 -0.48 5.46 84.66 0.46 -0.01 16 3 Si 0.98 44.77 29.54 68.60 2.03 46.80 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 5 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 6 H -0.25 -10.74 7.11 99.48 0.71 -10.03 16 7 C -0.54 -31.53 9.11 25.60 0.23 -31.30 16 8 H 0.08 4.04 7.74 -2.91 -0.02 4.02 16 9 C 0.04 2.51 4.26 29.85 0.13 2.64 16 10 C -0.11 -4.86 3.99 29.85 0.12 -4.74 16 11 C 0.51 21.30 7.70 87.66 0.67 21.97 16 12 O -0.59 -31.21 15.39 -3.02 -0.05 -31.26 16 13 N -0.61 -18.61 2.97 -818.13 -2.43 -21.04 16 14 C 0.10 2.01 6.34 86.36 0.55 2.55 16 15 C -0.13 -2.11 6.08 30.67 0.19 -1.93 16 16 C -0.11 -1.54 5.16 30.62 0.16 -1.39 16 17 C -0.08 -1.68 2.10 -10.59 -0.02 -1.70 16 18 H 0.05 1.28 7.95 -2.38 -0.02 1.26 16 19 C -0.10 -1.56 3.13 -10.27 -0.03 -1.59 16 20 C -0.13 -1.84 7.63 31.12 0.24 -1.61 16 21 C -0.14 -2.07 8.08 31.12 0.25 -1.82 16 22 C -0.15 -2.91 6.82 31.12 0.21 -2.69 16 23 C 0.11 3.04 5.44 86.50 0.47 3.52 16 24 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 25 H -0.02 -1.37 8.10 -2.39 -0.02 -1.39 16 26 H -0.02 -1.27 8.10 -2.39 -0.02 -1.29 16 27 H 0.10 3.79 7.69 -2.39 -0.02 3.77 16 28 H 0.10 3.83 7.94 -2.39 -0.02 3.81 16 29 H 0.09 1.91 5.93 -2.38 -0.01 1.90 16 30 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 31 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.07 1.16 7.96 -2.39 -0.02 1.14 16 37 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.06 1.42 8.10 -2.39 -0.02 1.40 16 42 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.06 1.95 6.54 -2.39 -0.02 1.93 16 Total: -1.00 -77.54 337.72 4.41 -73.12 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: 0.95 Total: 10.84 kcal Atomic # 6 Polarization: -21.72 SS G_CDS: 3.63 Total: -18.10 kcal Atomic # 7 Polarization: -79.26 SS G_CDS: -2.14 Total: -81.40 kcal Atomic # 8 Polarization: -31.21 SS G_CDS: -0.05 Total: -31.26 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -77.54 4.41 -73.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598395906.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.846 kcal (2) G-P(sol) polarization free energy of solvation -77.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds