Wall clock time and date at job start Mon Mar 30 2020 06:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.46474 * 2 1 4 4 C 1.50702 * 109.47190 * 119.99716 * 2 1 3 5 5 H 1.07998 * 119.99775 * 120.00310 * 4 2 1 6 6 C 1.37878 * 120.00157 * 300.00698 * 4 2 1 7 7 N 1.31513 * 119.99915 * 180.02562 * 6 4 2 8 8 Si 1.86804 * 119.99808 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.46898 * 90.00543 * 8 6 4 10 10 H 1.48498 * 109.46901 * 210.00298 * 8 6 4 11 11 H 1.48504 * 109.47192 * 330.00207 * 8 6 4 12 12 C 1.50702 * 109.47172 * 240.00287 * 2 1 3 13 13 O 1.21287 * 119.99346 * 239.99602 * 12 2 1 14 14 N 1.34768 * 119.99963 * 59.99789 * 12 2 1 15 15 C 1.39475 * 119.99860 * 179.97438 * 14 12 2 16 16 C 1.36117 * 126.21578 * 0.02907 * 15 14 12 17 17 C 1.39749 * 107.82791 * 180.24094 * 16 15 14 18 18 N 1.30850 * 108.32671 * 359.54947 * 17 16 15 19 19 N 1.35264 * 126.22004 * 179.97438 * 15 14 12 20 20 C 1.46495 * 126.04181 * 359.97438 * 19 15 14 21 21 C 1.52994 * 109.47495 * 59.99695 * 20 19 15 22 22 C 1.53005 * 109.46920 * 179.97438 * 20 19 15 23 23 C 1.53002 * 109.47373 * 299.99339 * 20 19 15 24 24 H 1.09006 * 109.46474 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47459 * 299.99627 * 1 2 3 26 26 H 1.09000 * 109.47560 * 60.00307 * 1 2 3 27 27 H 0.97004 * 119.99866 * 179.97438 * 7 6 4 28 28 H 0.96999 * 120.00795 * 359.97438 * 14 12 2 29 29 H 1.08002 * 126.08213 * 359.96929 * 16 15 14 30 30 H 1.08004 * 125.83891 * 179.73130 * 17 16 15 31 31 H 1.08996 * 109.47277 * 59.99927 * 21 20 19 32 32 H 1.09003 * 109.47555 * 180.02562 * 21 20 19 33 33 H 1.09000 * 109.47256 * 299.99761 * 21 20 19 34 34 H 1.08999 * 109.47167 * 59.99346 * 22 20 19 35 35 H 1.08997 * 109.47273 * 180.02562 * 22 20 19 36 36 H 1.08996 * 109.47053 * 299.99584 * 22 20 19 37 37 H 1.09002 * 109.46920 * 59.99617 * 23 20 19 38 38 H 1.08997 * 109.47624 * 180.02562 * 23 20 19 39 39 H 1.09007 * 109.47063 * 300.00681 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 2.1381 -0.8590 3.5566 8 14 0.6257 1.2798 2.6541 9 1 -0.8021 0.8743 2.6993 10 1 0.9770 1.9953 3.9070 11 1 0.8489 2.1773 1.4922 12 6 2.0324 -0.7104 -1.2305 13 8 2.7298 -1.6964 -1.1191 14 7 1.7068 -0.2499 -2.4545 15 6 2.1722 -0.9070 -3.5933 16 6 2.9580 -2.0182 -3.6160 17 6 3.1973 -2.3458 -4.9533 18 7 2.5750 -1.4764 -5.7076 19 7 1.9238 -0.5565 -4.8760 20 6 1.1159 0.5831 -5.3171 21 6 1.7280 1.8795 -4.7828 22 6 1.0865 0.6259 -6.8463 23 6 -0.3102 0.4345 -4.7832 24 1 -0.3632 -1.0278 -0.0005 25 1 -0.3634 0.5137 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.9039 -0.5274 4.4376 28 1 1.1488 0.5385 -2.5436 29 1 3.3336 -2.5493 -2.7538 30 1 3.7917 -3.1765 -5.3042 31 1 2.7439 1.9855 -5.1632 32 1 1.1266 2.7275 -5.1106 33 1 1.7492 1.8493 -3.6934 34 1 0.6508 -0.2977 -7.2273 35 1 0.4858 1.4741 -7.1745 36 1 2.1025 0.7321 -7.2263 37 1 -0.2889 0.4041 -3.6938 38 1 -0.9115 1.2822 -5.1117 39 1 -0.7463 -0.4892 -5.1638 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598466700.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:18 Heat of formation + Delta-G solvation = 49.733782 kcal Electronic energy + Delta-G solvation = -20886.338464 eV Core-core repulsion = 17831.395633 eV Total energy + Delta-G solvation = -3054.942831 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.39958 -39.01954 -36.87858 -34.33002 -34.02680 -31.40332 -30.05499 -28.60463 -27.71524 -27.54323 -25.27551 -23.68260 -22.24676 -21.14267 -19.65650 -19.09310 -17.18134 -16.87791 -15.73766 -15.48706 -15.41547 -14.87037 -14.52583 -14.32106 -13.78020 -13.59995 -13.24934 -12.95665 -12.83314 -12.58289 -12.46590 -12.42279 -12.16374 -12.04724 -11.79506 -11.43552 -11.28232 -11.19469 -10.79092 -10.51790 -10.38367 -10.29500 -9.73135 -9.23154 -8.89454 -8.74149 -8.67106 -7.71757 -6.13917 -4.15799 2.07174 2.35751 3.09464 3.16207 3.22022 3.29797 3.40579 3.54994 4.27191 4.28808 4.51378 4.61943 5.04285 5.14281 5.17747 5.18956 5.30808 5.36392 5.43561 5.50566 5.54427 5.71430 5.79943 5.90460 5.93149 5.96061 6.03790 6.13165 6.28009 6.39037 6.46612 6.58657 6.99473 7.08017 7.31841 7.40992 7.71308 8.08176 8.41804 8.76372 9.04683 9.43167 10.98661 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.028000 B = 0.005673 C = 0.004945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.771080 B = 4934.116640 C = 5661.080167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.003 3.997 3 H 0.057 0.943 4 C -0.510 4.510 5 H 0.096 0.904 6 C 0.073 3.927 7 N -0.891 5.891 8 Si 0.882 3.118 9 H -0.277 1.277 10 H -0.294 1.294 11 H -0.267 1.267 12 C 0.531 3.469 13 O -0.490 6.490 14 N -0.665 5.665 15 C 0.322 3.678 16 C -0.292 4.292 17 C 0.056 3.944 18 N -0.305 5.305 19 N -0.385 5.385 20 C 0.178 3.822 21 C -0.166 4.166 22 C -0.136 4.136 23 C -0.166 4.166 24 H 0.061 0.939 25 H 0.054 0.946 26 H 0.030 0.970 27 H 0.266 0.734 28 H 0.403 0.597 29 H 0.172 0.828 30 H 0.181 0.819 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.081 0.919 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.869 6.261 -17.885 19.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.019 4.019 3 H 0.074 0.926 4 C -0.548 4.548 5 H 0.114 0.886 6 C -0.129 4.129 7 N -0.528 5.528 8 Si 0.712 3.288 9 H -0.204 1.204 10 H -0.221 1.221 11 H -0.193 1.193 12 C 0.320 3.680 13 O -0.360 6.360 14 N -0.316 5.316 15 C 0.102 3.898 16 C -0.324 4.324 17 C -0.130 4.130 18 N -0.126 5.126 19 N -0.174 5.174 20 C 0.095 3.905 21 C -0.224 4.224 22 C -0.193 4.193 23 C -0.224 4.224 24 H 0.081 0.919 25 H 0.072 0.928 26 H 0.049 0.951 27 H 0.076 0.924 28 H 0.240 0.760 29 H 0.189 0.811 30 H 0.198 0.802 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.099 0.901 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.684 6.000 -18.711 20.200 hybrid contribution -0.781 1.018 1.074 1.674 sum -5.465 7.018 -17.637 19.753 Atomic orbital electron populations 1.22177 0.97057 1.01925 0.99419 1.19334 0.93363 0.97629 0.91545 0.92577 1.20877 1.32618 1.14387 0.86956 0.88590 1.24954 0.95718 0.96514 0.95702 1.69868 1.44996 1.40002 0.97936 0.86947 0.80769 0.83774 0.77281 1.20380 1.22093 1.19267 1.21611 0.79075 0.84624 0.82738 1.90537 1.35117 1.25102 1.85238 1.43874 1.52767 1.31173 1.03747 1.18235 0.97068 0.94197 0.80320 1.21728 1.10571 1.01432 0.98656 1.23712 0.98665 0.98404 0.92180 1.77299 1.15418 1.03503 1.16395 1.48838 1.42644 1.24185 1.01775 1.20654 0.89628 0.83188 0.97015 1.22345 1.02323 0.95960 1.01781 1.21815 1.03349 1.02699 0.91479 1.22349 0.94614 1.03654 1.01799 0.91948 0.92783 0.95060 0.92380 0.75964 0.81066 0.80219 0.91259 0.90038 0.91992 0.91313 0.91238 0.91319 0.91963 0.90050 0.91274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 8.57 37.16 0.32 -2.55 16 2 C 0.00 0.07 2.23 -92.92 -0.21 -0.14 16 3 H 0.06 1.19 7.20 -51.93 -0.37 0.82 16 4 C -0.51 -14.15 8.96 -34.44 -0.31 -14.46 16 5 H 0.10 3.03 7.00 -52.49 -0.37 2.67 16 6 C 0.07 2.05 5.45 -17.82 -0.10 1.96 16 7 N -0.89 -26.74 13.96 55.43 0.77 -25.97 16 8 Si 0.88 20.40 24.37 -169.99 -4.14 16.26 16 9 H -0.28 -6.19 6.87 56.52 0.39 -5.80 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.27 -5.68 6.53 56.52 0.37 -5.31 16 12 C 0.53 11.23 7.11 -10.99 -0.08 11.15 16 13 O -0.49 -12.01 12.59 5.55 0.07 -11.94 16 14 N -0.66 -11.23 4.61 -11.46 -0.05 -11.28 16 15 C 0.32 5.53 7.00 -153.15 -1.07 4.45 16 16 C -0.29 -5.29 9.65 -39.78 -0.38 -5.68 16 17 C 0.06 0.86 12.01 -17.41 -0.21 0.65 16 18 N -0.30 -4.75 11.63 30.60 0.36 -4.39 16 19 N -0.38 -5.69 3.47 -47.70 -0.17 -5.86 16 20 C 0.18 1.96 1.06 -131.82 -0.14 1.82 16 21 C -0.17 -1.60 8.47 37.15 0.31 -1.29 16 22 C -0.14 -1.28 7.98 37.16 0.30 -0.98 16 23 C -0.17 -1.60 8.47 37.16 0.31 -1.29 16 24 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 25 H 0.05 1.09 3.27 -51.93 -0.17 0.92 16 26 H 0.03 0.46 7.56 -51.93 -0.39 0.07 16 27 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 28 H 0.40 5.59 4.35 -40.82 -0.18 5.41 16 29 H 0.17 3.46 5.83 -52.49 -0.31 3.16 16 30 H 0.18 2.11 8.06 -52.48 -0.42 1.68 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.65 5.88 -51.93 -0.31 0.34 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.65 5.88 -51.93 -0.31 0.34 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 306.58 15.07 4.62 4.62 Total: -1.00 -32.53 306.58 -5.18 -37.71 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -5.38 Total: 7.20 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: -1.25 Total: -6.35 kcal Atomic # 7 Polarization: -48.41 SS G_CDS: 0.91 Total: -47.49 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.07 Total: -11.94 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -4.14 Total: 16.26 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.53 -5.18 -37.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598466700.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.444 kcal (2) G-P(sol) polarization free energy of solvation -32.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds