Wall clock time and date at job start Mon Mar 30 2020 06:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.46474 * 2 1 4 4 C 1.50702 * 109.47190 * 119.99716 * 2 1 3 5 5 H 1.07998 * 119.99775 * 120.00310 * 4 2 1 6 6 C 1.37878 * 120.00157 * 300.00698 * 4 2 1 7 7 N 1.31513 * 119.99915 * 180.02562 * 6 4 2 8 8 Si 1.86804 * 119.99808 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.46898 * 90.00543 * 8 6 4 10 10 H 1.48498 * 109.46901 * 210.00298 * 8 6 4 11 11 H 1.48504 * 109.47192 * 330.00207 * 8 6 4 12 12 C 1.50702 * 109.47172 * 240.00287 * 2 1 3 13 13 O 1.21287 * 119.99346 * 239.99602 * 12 2 1 14 14 N 1.34768 * 119.99963 * 59.99789 * 12 2 1 15 15 C 1.39475 * 119.99860 * 179.97438 * 14 12 2 16 16 C 1.36117 * 126.21578 * 0.02907 * 15 14 12 17 17 C 1.39749 * 107.82791 * 180.24094 * 16 15 14 18 18 N 1.30850 * 108.32671 * 359.54947 * 17 16 15 19 19 N 1.35264 * 126.22004 * 179.97438 * 15 14 12 20 20 C 1.46495 * 126.04181 * 359.97438 * 19 15 14 21 21 C 1.52994 * 109.47495 * 59.99695 * 20 19 15 22 22 C 1.53005 * 109.46920 * 179.97438 * 20 19 15 23 23 C 1.53002 * 109.47373 * 299.99339 * 20 19 15 24 24 H 1.09006 * 109.46474 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47459 * 299.99627 * 1 2 3 26 26 H 1.09000 * 109.47560 * 60.00307 * 1 2 3 27 27 H 0.97004 * 119.99866 * 179.97438 * 7 6 4 28 28 H 0.96999 * 120.00795 * 359.97438 * 14 12 2 29 29 H 1.08002 * 126.08213 * 359.96929 * 16 15 14 30 30 H 1.08004 * 125.83891 * 179.73130 * 17 16 15 31 31 H 1.08996 * 109.47277 * 59.99927 * 21 20 19 32 32 H 1.09003 * 109.47555 * 180.02562 * 21 20 19 33 33 H 1.09000 * 109.47256 * 299.99761 * 21 20 19 34 34 H 1.08999 * 109.47167 * 59.99346 * 22 20 19 35 35 H 1.08997 * 109.47273 * 180.02562 * 22 20 19 36 36 H 1.08996 * 109.47053 * 299.99584 * 22 20 19 37 37 H 1.09002 * 109.46920 * 59.99617 * 23 20 19 38 38 H 1.08997 * 109.47624 * 180.02562 * 23 20 19 39 39 H 1.09007 * 109.47063 * 300.00681 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 2.1381 -0.8590 3.5566 8 14 0.6257 1.2798 2.6541 9 1 -0.8021 0.8743 2.6993 10 1 0.9770 1.9953 3.9070 11 1 0.8489 2.1773 1.4922 12 6 2.0324 -0.7104 -1.2305 13 8 2.7298 -1.6964 -1.1191 14 7 1.7068 -0.2499 -2.4545 15 6 2.1722 -0.9070 -3.5933 16 6 2.9580 -2.0182 -3.6160 17 6 3.1973 -2.3458 -4.9533 18 7 2.5750 -1.4764 -5.7076 19 7 1.9238 -0.5565 -4.8760 20 6 1.1159 0.5831 -5.3171 21 6 1.7280 1.8795 -4.7828 22 6 1.0865 0.6259 -6.8463 23 6 -0.3102 0.4345 -4.7832 24 1 -0.3632 -1.0278 -0.0005 25 1 -0.3634 0.5137 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.9039 -0.5274 4.4376 28 1 1.1488 0.5385 -2.5436 29 1 3.3336 -2.5493 -2.7538 30 1 3.7917 -3.1765 -5.3042 31 1 2.7439 1.9855 -5.1632 32 1 1.1266 2.7275 -5.1106 33 1 1.7492 1.8493 -3.6934 34 1 0.6508 -0.2977 -7.2273 35 1 0.4858 1.4741 -7.1745 36 1 2.1025 0.7321 -7.2263 37 1 -0.2889 0.4041 -3.6938 38 1 -0.9115 1.2822 -5.1117 39 1 -0.7463 -0.4892 -5.1638 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598466700.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:18 Heat of formation + Delta-G solvation = 27.229552 kcal Electronic energy + Delta-G solvation = -20887.314321 eV Core-core repulsion = 17831.395633 eV Total energy + Delta-G solvation = -3055.918688 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.67340 -40.62179 -37.79609 -35.90966 -35.85560 -33.37204 -31.21595 -29.93069 -28.43095 -28.32693 -27.16143 -25.36965 -23.36944 -22.61331 -20.93313 -20.61711 -18.84188 -18.26759 -17.40742 -16.94940 -16.69729 -16.28842 -15.92448 -15.40288 -15.22007 -14.89958 -14.58024 -14.45611 -14.17865 -14.01988 -13.55348 -13.27183 -13.17870 -13.02059 -12.92407 -12.80742 -12.59444 -12.27411 -12.23473 -12.09268 -11.96331 -11.57217 -11.43552 -11.27148 -10.78785 -10.57398 -9.91858 -9.10646 -8.27123 -6.36674 0.72342 1.15439 1.34607 1.41274 1.52462 1.67043 2.05908 2.11613 2.34632 3.06185 3.40262 3.72997 3.76444 3.85376 4.02575 4.31405 4.36116 4.48059 4.51911 4.53467 4.62159 4.67018 4.69948 4.76952 4.81291 4.83504 4.92536 4.95039 5.11518 5.15116 5.18495 5.32897 5.38592 5.47307 5.80234 6.02478 6.20003 6.42615 6.75810 6.82519 7.14752 7.29483 8.90183 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.028000 B = 0.005673 C = 0.004945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.771080 B = 4934.116640 C = 5661.080167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.002 3.998 3 H 0.079 0.921 4 C -0.525 4.525 5 H 0.033 0.967 6 C 0.009 3.991 7 N -0.950 5.950 8 Si 0.956 3.044 9 H -0.259 1.259 10 H -0.301 1.301 11 H -0.225 1.225 12 C 0.532 3.468 13 O -0.537 6.537 14 N -0.641 5.641 15 C 0.310 3.690 16 C -0.323 4.323 17 C 0.058 3.942 18 N -0.306 5.306 19 N -0.374 5.374 20 C 0.162 3.838 21 C -0.164 4.164 22 C -0.131 4.131 23 C -0.164 4.164 24 H 0.049 0.951 25 H 0.053 0.947 26 H 0.085 0.915 27 H 0.268 0.732 28 H 0.421 0.579 29 H 0.142 0.858 30 H 0.211 0.789 31 H 0.057 0.943 32 H 0.118 0.882 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.104 0.896 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.118 0.882 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.450 9.684 -20.352 23.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.020 4.020 3 H 0.097 0.903 4 C -0.563 4.563 5 H 0.051 0.949 6 C -0.188 4.188 7 N -0.589 5.589 8 Si 0.780 3.220 9 H -0.185 1.185 10 H -0.229 1.229 11 H -0.148 1.148 12 C 0.321 3.679 13 O -0.410 6.410 14 N -0.293 5.293 15 C 0.089 3.911 16 C -0.355 4.355 17 C -0.127 4.127 18 N -0.128 5.128 19 N -0.163 5.163 20 C 0.081 3.919 21 C -0.222 4.222 22 C -0.188 4.188 23 C -0.222 4.222 24 H 0.068 0.932 25 H 0.071 0.929 26 H 0.104 0.896 27 H 0.077 0.923 28 H 0.262 0.738 29 H 0.160 0.840 30 H 0.227 0.773 31 H 0.076 0.924 32 H 0.137 0.863 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.123 0.877 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.136 0.864 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.297 9.461 -21.263 24.390 hybrid contribution 0.103 -0.134 1.753 1.761 sum -7.194 9.327 -19.510 22.790 Atomic orbital electron populations 1.22090 0.94040 1.02111 1.01945 1.19269 0.95643 0.97675 0.89395 0.90334 1.21019 1.32089 1.13128 0.90048 0.94850 1.26008 0.97349 1.00683 0.94721 1.70069 1.47338 1.42726 0.98795 0.85769 0.78849 0.79038 0.78332 1.18459 1.22860 1.14816 1.21451 0.78590 0.84010 0.83876 1.90553 1.37231 1.27155 1.86069 1.43359 1.52227 1.31265 1.02481 1.18168 0.97423 0.94298 0.81240 1.21676 1.12065 1.02579 0.99144 1.24097 0.98680 0.99130 0.90803 1.77264 1.15269 1.03596 1.16672 1.49240 1.42042 1.24555 1.00501 1.21224 0.90049 0.82346 0.98289 1.22382 1.02365 0.96322 1.01144 1.21818 1.03263 1.03666 0.90075 1.22387 0.93817 1.04799 1.01210 0.93196 0.92888 0.89635 0.92310 0.73835 0.84000 0.77293 0.92408 0.86344 0.92775 0.92417 0.87737 0.92451 0.92664 0.86354 0.92378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.11 8.57 71.98 0.62 -4.49 16 2 C 0.00 0.09 2.23 -12.28 -0.03 0.06 16 3 H 0.08 3.08 7.20 -2.38 -0.02 3.06 16 4 C -0.52 -30.20 8.96 25.60 0.23 -29.97 16 5 H 0.03 2.28 7.00 -2.91 -0.02 2.26 16 6 C 0.01 0.53 5.45 84.66 0.46 0.99 16 7 N -0.95 -59.57 13.96 21.45 0.30 -59.27 16 8 Si 0.96 40.80 24.37 68.60 1.67 42.47 16 9 H -0.26 -10.29 6.87 99.48 0.68 -9.61 16 10 H -0.30 -13.13 7.11 99.48 0.71 -12.43 16 11 H -0.23 -8.06 6.53 99.48 0.65 -7.41 16 12 C 0.53 22.66 7.11 87.66 0.62 23.29 16 13 O -0.54 -27.92 12.59 -3.05 -0.04 -27.96 16 14 N -0.64 -20.77 4.61 -308.56 -1.42 -22.19 16 15 C 0.31 10.46 7.00 131.32 0.92 11.38 16 16 C -0.32 -12.04 9.65 22.14 0.21 -11.82 16 17 C 0.06 1.77 12.01 85.20 1.02 2.79 16 18 N -0.31 -9.17 11.63 -57.09 -0.66 -9.83 16 19 N -0.37 -10.43 3.47 -304.84 -1.06 -11.49 16 20 C 0.16 3.02 1.06 3.60 0.00 3.02 16 21 C -0.16 -2.52 8.47 71.98 0.61 -1.91 16 22 C -0.13 -2.01 7.98 71.98 0.57 -1.44 16 23 C -0.16 -2.48 8.47 71.98 0.61 -1.87 16 24 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 25 H 0.05 1.90 3.27 -2.39 -0.01 1.89 16 26 H 0.08 2.09 7.56 -2.39 -0.02 2.08 16 27 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 28 H 0.42 10.26 4.35 -92.71 -0.40 9.85 16 29 H 0.14 6.19 5.83 -2.91 -0.02 6.17 16 30 H 0.21 4.74 8.06 -2.91 -0.02 4.72 16 31 H 0.06 1.03 8.14 -2.39 -0.02 1.02 16 32 H 0.12 0.95 8.14 -2.39 -0.02 0.94 16 33 H 0.05 0.92 5.88 -2.39 -0.01 0.90 16 34 H 0.06 1.02 8.14 -2.39 -0.02 1.01 16 35 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.05 0.91 5.88 -2.39 -0.01 0.90 16 38 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 Total: -1.00 -77.68 306.58 5.22 -72.46 By element: Atomic # 1 Polarization: 25.21 SS G_CDS: 0.58 Total: 25.79 kcal Atomic # 6 Polarization: -15.83 SS G_CDS: 5.86 Total: -9.97 kcal Atomic # 7 Polarization: -99.94 SS G_CDS: -2.85 Total: -102.78 kcal Atomic # 8 Polarization: -27.92 SS G_CDS: -0.04 Total: -27.96 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 1.67 Total: 42.47 kcal Total: -77.68 5.22 -72.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598466700.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.687 kcal (2) G-P(sol) polarization free energy of solvation -77.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds