Wall clock time and date at job start Mon Mar 30 2020 06:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 119.99915 * 2 1 4 4 H 1.48502 * 109.46775 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47235 * 300.00106 * 3 2 1 6 6 H 1.48497 * 109.47179 * 60.00595 * 3 2 1 7 7 C 1.37880 * 119.99793 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99728 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99867 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46844 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47172 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99722 * 359.97438 * 11 10 9 13 13 N 1.34771 * 120.00216 * 179.97438 * 11 10 9 14 14 C 1.46496 * 120.00157 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47337 * 270.00189 * 14 13 11 16 16 C 1.53004 * 109.47251 * 180.02562 * 15 14 13 17 17 C 1.53006 * 117.49487 * 243.62180 * 16 15 14 18 18 C 1.53001 * 117.49937 * 175.00136 * 16 15 14 19 19 C 1.46506 * 120.00084 * 0.02562 * 13 11 10 20 20 C 1.53002 * 109.47035 * 270.00167 * 19 13 11 21 21 C 1.52997 * 117.49591 * 243.74831 * 20 19 13 22 22 C 1.52999 * 117.49919 * 175.08784 * 20 19 13 23 23 H 0.97006 * 120.00061 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47043 * 60.00006 * 9 7 2 25 25 H 1.08998 * 109.47038 * 300.00132 * 9 7 2 26 26 H 1.09000 * 109.47102 * 59.99700 * 10 9 7 27 27 H 1.08998 * 109.47172 * 299.99757 * 10 9 7 28 28 H 1.09001 * 109.47057 * 30.00532 * 14 13 11 29 29 H 1.08999 * 109.47333 * 150.00092 * 14 13 11 30 30 H 1.08998 * 109.47036 * 299.99480 * 15 14 13 31 31 H 1.08992 * 109.47282 * 59.99942 * 15 14 13 32 32 H 1.09003 * 115.54794 * 29.32534 * 16 15 14 33 33 H 1.08990 * 117.50192 * 359.97438 * 17 16 15 34 34 H 1.09003 * 117.49482 * 145.02016 * 17 16 15 35 35 H 1.08997 * 117.49437 * 214.97867 * 18 16 15 36 36 H 1.08994 * 117.49677 * 359.97438 * 18 16 15 37 37 H 1.09004 * 109.47073 * 29.99849 * 19 13 11 38 38 H 1.09000 * 109.47212 * 149.99932 * 19 13 11 39 39 H 1.09006 * 115.54840 * 29.41371 * 20 19 13 40 40 H 1.08997 * 117.49952 * 359.97438 * 21 20 19 41 41 H 1.09002 * 117.50050 * 145.02213 * 21 20 19 42 42 H 1.08998 * 117.49742 * 214.97977 * 22 20 19 43 43 H 1.09000 * 117.49487 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4916 -4.9672 -0.0012 12 8 0.2788 -4.9672 -0.0011 13 7 2.1654 -6.1344 -0.0018 14 6 1.4329 -7.4031 -0.0019 15 6 1.1785 -7.8452 1.4406 16 6 0.4140 -9.1706 1.4405 17 6 -0.9920 -9.1751 2.0439 18 6 0.1638 -9.8419 2.7924 19 6 3.6305 -6.1345 -0.0013 20 6 4.1410 -6.1334 -1.4437 21 6 4.9425 -7.3503 -1.9102 22 6 5.6513 -6.0171 -1.6584 23 1 -0.4850 0.8401 0.0004 24 1 0.6239 -2.5567 -0.8903 25 1 0.6246 -2.5571 0.8897 26 1 2.8718 -3.6044 0.8894 27 1 2.8717 -3.6044 -0.8905 28 1 0.4803 -7.2726 -0.5153 29 1 2.0217 -8.1626 -0.5161 30 1 2.1311 -7.9758 1.9540 31 1 0.5897 -7.0858 1.9549 32 1 0.5961 -9.8183 0.5829 33 1 -1.3722 -8.2341 2.4412 34 1 -1.7353 -9.8258 1.5832 35 1 0.1810 -10.9313 2.8241 36 1 0.5442 -9.3396 3.6818 37 1 3.9937 -5.2449 0.5133 38 1 3.9936 -7.0249 0.5120 39 1 3.4902 -5.6498 -2.1723 40 1 5.1064 -8.1514 -1.1895 41 1 4.8195 -7.6670 -2.9459 42 1 5.9943 -5.4573 -2.5285 43 1 6.2812 -5.9410 -0.7721 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598467730.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:13 Heat of formation + Delta-G solvation = -7.238573 kcal Electronic energy + Delta-G solvation = -20097.560219 eV Core-core repulsion = 17143.687225 eV Total energy + Delta-G solvation = -2953.872995 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.67538 -37.61559 -37.41191 -34.80424 -33.45898 -31.46630 -30.15704 -26.81749 -25.88398 -23.57446 -22.47775 -22.42565 -21.32219 -20.80745 -20.44005 -18.45844 -16.93126 -16.18941 -15.89030 -15.70988 -15.25506 -14.76090 -14.41135 -14.14799 -13.98043 -13.71587 -12.90323 -12.80845 -12.65671 -12.14942 -11.92243 -11.67021 -11.65282 -11.58055 -11.38418 -11.20323 -11.07964 -10.92988 -10.55809 -10.47476 -10.41889 -10.07145 -9.94545 -9.86692 -9.57631 -9.11879 -8.93096 -8.40109 -8.29006 -5.93775 -3.97832 3.25213 3.26690 3.33849 3.41041 3.44400 3.70939 3.75736 4.48598 4.61386 4.66972 4.82097 4.83431 4.83958 4.89772 5.09696 5.20605 5.28380 5.41251 5.46461 5.52754 5.53237 5.55518 5.59894 5.63010 5.71992 5.81081 5.81786 5.92903 6.01744 6.04634 6.15566 6.18956 6.27531 6.28655 6.34074 6.84804 6.95431 7.77452 7.79796 7.89775 8.10141 8.41802 8.80348 9.11055 9.65585 11.17255 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.015508 B = 0.004659 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.127858 B = 6008.645400 C = 7508.921937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.525 4.525 8 H 0.056 0.944 9 C 0.037 3.963 10 C -0.128 4.128 11 C 0.511 3.489 12 O -0.531 6.531 13 N -0.623 5.623 14 C 0.120 3.880 15 C -0.104 4.104 16 C -0.148 4.148 17 C -0.179 4.179 18 C -0.183 4.183 19 C 0.143 3.857 20 C -0.169 4.169 21 C -0.182 4.182 22 C -0.174 4.174 23 H 0.260 0.740 24 H 0.023 0.977 25 H 0.022 0.978 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.103 0.897 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.109 0.891 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.095 0.905 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.333 -19.594 0.753 21.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.563 4.563 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.168 4.168 11 C 0.301 3.699 12 O -0.406 6.406 13 N -0.357 5.357 14 C -0.003 4.003 15 C -0.143 4.143 16 C -0.167 4.167 17 C -0.216 4.216 18 C -0.220 4.220 19 C 0.020 3.980 20 C -0.189 4.189 21 C -0.219 4.219 22 C -0.212 4.212 23 H 0.070 0.930 24 H 0.041 0.959 25 H 0.041 0.959 26 H 0.096 0.904 27 H 0.097 0.903 28 H 0.100 0.900 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.121 0.879 33 H 0.114 0.886 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.106 0.894 38 H 0.092 0.908 39 H 0.127 0.873 40 H 0.110 0.890 41 H 0.109 0.891 42 H 0.113 0.887 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 7.500 -19.453 0.755 20.862 hybrid contribution 0.528 0.837 -0.064 0.992 sum 8.028 -18.616 0.691 20.285 Atomic orbital electron populations 1.70013 1.06051 1.26406 1.50399 1.25023 0.94804 0.99191 0.95366 0.86554 0.80037 0.83923 0.77568 1.19738 1.21042 1.21035 1.21261 0.92944 0.91005 1.51094 0.92581 1.18907 0.93197 0.89471 0.98515 1.21889 1.00629 0.92007 1.02254 1.21592 0.88415 0.85608 0.74268 1.90661 1.14394 1.87278 1.48281 1.48132 1.06034 1.06033 1.75497 1.21311 0.97793 0.85077 0.96076 1.21547 0.99793 0.94868 0.98061 1.22217 0.98830 0.98734 0.96893 1.23043 0.91469 1.02900 1.04161 1.22947 1.03791 0.99529 0.95756 1.21092 0.79993 1.03036 0.93907 1.22893 0.94386 1.02606 0.98989 1.23033 1.05042 0.91671 1.02138 1.22933 0.94492 1.00234 1.03502 0.93048 0.95904 0.95934 0.90441 0.90255 0.90048 0.91203 0.91830 0.91163 0.87897 0.88555 0.89013 0.89083 0.88942 0.89382 0.90758 0.87329 0.88955 0.89115 0.88680 0.88628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.66 13.29 55.43 0.74 -26.93 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.52 -15.01 9.11 -34.44 -0.31 -15.33 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 10 C -0.13 -2.66 4.19 -27.88 -0.12 -2.78 16 11 C 0.51 10.12 7.67 -10.99 -0.08 10.04 16 12 O -0.53 -12.73 15.56 5.55 0.09 -12.65 16 13 N -0.62 -9.21 2.47 -173.68 -0.43 -9.64 16 14 C 0.12 1.56 5.36 -4.04 -0.02 1.54 16 15 C -0.10 -1.25 5.82 -26.73 -0.16 -1.41 16 16 C -0.15 -1.53 5.74 -90.61 -0.52 -2.05 16 17 C -0.18 -1.88 10.18 -26.73 -0.27 -2.15 16 18 C -0.18 -1.71 10.25 -26.73 -0.27 -1.99 16 19 C 0.14 1.66 5.49 -4.04 -0.02 1.64 16 20 C -0.17 -1.88 5.93 -90.62 -0.54 -2.42 16 21 C -0.18 -1.63 10.18 -26.69 -0.27 -1.90 16 22 C -0.17 -1.64 10.25 -26.69 -0.27 -1.91 16 23 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 24 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 25 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 26 H 0.08 1.48 7.40 -51.93 -0.38 1.10 16 27 H 0.08 1.54 8.03 -51.93 -0.42 1.12 16 28 H 0.08 1.23 7.42 -51.93 -0.39 0.85 16 29 H 0.07 0.74 8.07 -51.93 -0.42 0.32 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 1.04 7.88 -51.93 -0.41 0.63 16 32 H 0.10 0.94 8.07 -51.93 -0.42 0.53 16 33 H 0.10 1.13 8.03 -51.93 -0.42 0.71 16 34 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.09 1.05 6.44 -51.93 -0.33 0.71 16 38 H 0.07 0.70 7.81 -51.93 -0.41 0.30 16 39 H 0.11 1.42 8.14 -51.93 -0.42 1.00 16 40 H 0.09 0.73 8.03 -51.93 -0.42 0.31 16 41 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 356.66 15.07 5.37 5.37 Total: -1.00 -33.16 356.66 -10.11 -43.26 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -7.77 Total: 0.06 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: -3.08 Total: -16.25 kcal Atomic # 7 Polarization: -36.88 SS G_CDS: 0.31 Total: -36.57 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: 0.09 Total: -12.65 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.16 -10.11 -43.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598467730.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.022 kcal (2) G-P(sol) polarization free energy of solvation -33.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds