Wall clock time and date at job start Mon Mar 30 2020 06:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 119.99915 * 2 1 4 4 H 1.48502 * 109.46775 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47235 * 300.00106 * 3 2 1 6 6 H 1.48497 * 109.47179 * 60.00595 * 3 2 1 7 7 C 1.37880 * 119.99793 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99728 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99867 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46844 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47172 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99722 * 359.97438 * 11 10 9 13 13 N 1.34771 * 120.00216 * 179.97438 * 11 10 9 14 14 C 1.46496 * 120.00157 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47337 * 270.00189 * 14 13 11 16 16 C 1.53004 * 109.47251 * 180.02562 * 15 14 13 17 17 C 1.53006 * 117.49487 * 243.62180 * 16 15 14 18 18 C 1.53001 * 117.49937 * 175.00136 * 16 15 14 19 19 C 1.46506 * 120.00084 * 0.02562 * 13 11 10 20 20 C 1.53002 * 109.47035 * 270.00167 * 19 13 11 21 21 C 1.52997 * 117.49591 * 243.74831 * 20 19 13 22 22 C 1.52999 * 117.49919 * 175.08784 * 20 19 13 23 23 H 0.97006 * 120.00061 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47043 * 60.00006 * 9 7 2 25 25 H 1.08998 * 109.47038 * 300.00132 * 9 7 2 26 26 H 1.09000 * 109.47102 * 59.99700 * 10 9 7 27 27 H 1.08998 * 109.47172 * 299.99757 * 10 9 7 28 28 H 1.09001 * 109.47057 * 30.00532 * 14 13 11 29 29 H 1.08999 * 109.47333 * 150.00092 * 14 13 11 30 30 H 1.08998 * 109.47036 * 299.99480 * 15 14 13 31 31 H 1.08992 * 109.47282 * 59.99942 * 15 14 13 32 32 H 1.09003 * 115.54794 * 29.32534 * 16 15 14 33 33 H 1.08990 * 117.50192 * 359.97438 * 17 16 15 34 34 H 1.09003 * 117.49482 * 145.02016 * 17 16 15 35 35 H 1.08997 * 117.49437 * 214.97867 * 18 16 15 36 36 H 1.08994 * 117.49677 * 359.97438 * 18 16 15 37 37 H 1.09004 * 109.47073 * 29.99849 * 19 13 11 38 38 H 1.09000 * 109.47212 * 149.99932 * 19 13 11 39 39 H 1.09006 * 115.54840 * 29.41371 * 20 19 13 40 40 H 1.08997 * 117.49952 * 359.97438 * 21 20 19 41 41 H 1.09002 * 117.50050 * 145.02213 * 21 20 19 42 42 H 1.08998 * 117.49742 * 214.97977 * 22 20 19 43 43 H 1.09000 * 117.49487 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4916 -4.9672 -0.0012 12 8 0.2788 -4.9672 -0.0011 13 7 2.1654 -6.1344 -0.0018 14 6 1.4329 -7.4031 -0.0019 15 6 1.1785 -7.8452 1.4406 16 6 0.4140 -9.1706 1.4405 17 6 -0.9920 -9.1751 2.0439 18 6 0.1638 -9.8419 2.7924 19 6 3.6305 -6.1345 -0.0013 20 6 4.1410 -6.1334 -1.4437 21 6 4.9425 -7.3503 -1.9102 22 6 5.6513 -6.0171 -1.6584 23 1 -0.4850 0.8401 0.0004 24 1 0.6239 -2.5567 -0.8903 25 1 0.6246 -2.5571 0.8897 26 1 2.8718 -3.6044 0.8894 27 1 2.8717 -3.6044 -0.8905 28 1 0.4803 -7.2726 -0.5153 29 1 2.0217 -8.1626 -0.5161 30 1 2.1311 -7.9758 1.9540 31 1 0.5897 -7.0858 1.9549 32 1 0.5961 -9.8183 0.5829 33 1 -1.3722 -8.2341 2.4412 34 1 -1.7353 -9.8258 1.5832 35 1 0.1810 -10.9313 2.8241 36 1 0.5442 -9.3396 3.6818 37 1 3.9937 -5.2449 0.5133 38 1 3.9936 -7.0249 0.5120 39 1 3.4902 -5.6498 -2.1723 40 1 5.1064 -8.1514 -1.1895 41 1 4.8195 -7.6670 -2.9459 42 1 5.9943 -5.4573 -2.5285 43 1 6.2812 -5.9410 -0.7721 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598467730.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:12 Heat of formation + Delta-G solvation = -25.315355 kcal Electronic energy + Delta-G solvation = -20098.344087 eV Core-core repulsion = 17143.687225 eV Total energy + Delta-G solvation = -2954.656863 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.07495 -38.59339 -38.33835 -36.03653 -35.56877 -33.23684 -31.54418 -28.02773 -27.65431 -25.06098 -23.27815 -23.13172 -22.94093 -21.86865 -21.36073 -19.86280 -18.79265 -17.58227 -17.31808 -16.88972 -16.43425 -16.28443 -15.91926 -15.26108 -15.11893 -14.71237 -14.37054 -14.29076 -14.06844 -13.66955 -13.37179 -13.17355 -12.84493 -12.55261 -12.49151 -12.41981 -12.27449 -12.25955 -12.16829 -11.96134 -11.61290 -11.32142 -11.25604 -11.23707 -10.83075 -10.80753 -10.60203 -10.57320 -9.63820 -8.18542 -6.32845 1.41471 1.43210 1.56576 1.68612 2.04038 2.42725 2.90206 2.98054 3.14407 3.64420 3.78854 3.92069 4.00012 4.04125 4.07540 4.15658 4.26860 4.33783 4.40811 4.47517 4.50011 4.57394 4.64863 4.69478 4.78081 4.83509 4.88494 4.94570 5.03759 5.07147 5.11438 5.12641 5.25430 5.34085 5.35363 5.40069 5.47772 5.60937 5.70610 5.84276 6.16936 6.41139 6.85520 7.28513 7.37633 8.94522 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.015508 B = 0.004659 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.127858 B = 6008.645400 C = 7508.921937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.007 4.007 3 Si 0.974 3.026 4 H -0.252 1.252 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.541 4.541 8 H 0.076 0.924 9 C 0.044 3.956 10 C -0.114 4.114 11 C 0.508 3.492 12 O -0.588 6.588 13 N -0.607 5.607 14 C 0.120 3.880 15 C -0.096 4.096 16 C -0.150 4.150 17 C -0.198 4.198 18 C -0.167 4.167 19 C 0.139 3.861 20 C -0.191 4.191 21 C -0.165 4.165 22 C -0.169 4.169 23 H 0.263 0.737 24 H -0.021 1.021 25 H -0.020 1.020 26 H 0.100 0.900 27 H 0.097 0.903 28 H 0.052 0.948 29 H 0.108 0.892 30 H 0.082 0.918 31 H 0.032 0.968 32 H 0.123 0.877 33 H 0.073 0.927 34 H 0.103 0.897 35 H 0.113 0.887 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.109 0.891 39 H 0.081 0.919 40 H 0.113 0.887 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.835 -21.149 0.927 24.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.204 4.204 3 Si 0.798 3.202 4 H -0.175 1.175 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.579 4.579 8 H 0.094 0.906 9 C 0.006 3.994 10 C -0.153 4.153 11 C 0.298 3.702 12 O -0.468 6.468 13 N -0.339 5.339 14 C -0.002 4.002 15 C -0.135 4.135 16 C -0.169 4.169 17 C -0.235 4.235 18 C -0.203 4.203 19 C 0.017 3.983 20 C -0.210 4.210 21 C -0.201 4.201 22 C -0.206 4.206 23 H 0.071 0.929 24 H -0.002 1.002 25 H -0.001 1.001 26 H 0.118 0.882 27 H 0.115 0.885 28 H 0.071 0.929 29 H 0.126 0.874 30 H 0.101 0.899 31 H 0.051 0.949 32 H 0.141 0.859 33 H 0.091 0.909 34 H 0.121 0.879 35 H 0.131 0.869 36 H 0.109 0.891 37 H 0.105 0.895 38 H 0.127 0.873 39 H 0.099 0.901 40 H 0.131 0.869 41 H 0.111 0.889 42 H 0.112 0.888 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 11.067 -21.058 0.928 23.807 hybrid contribution -0.566 1.255 -0.136 1.384 sum 10.501 -19.803 0.792 22.429 Atomic orbital electron populations 1.70195 1.08370 1.27739 1.51543 1.26150 0.95714 1.03973 0.94580 0.85264 0.79349 0.77993 0.77591 1.17496 1.20606 1.20540 1.21722 0.93947 0.91522 1.50700 0.90635 1.18683 0.93641 0.92608 0.94448 1.21619 0.99172 0.90444 1.04114 1.21369 0.87615 0.86889 0.74286 1.90641 1.16640 1.88140 1.51352 1.48063 1.07682 1.05093 1.73046 1.21478 0.97057 0.84723 0.96972 1.21438 1.00324 0.94827 0.96882 1.22246 0.98088 0.98152 0.98397 1.23073 0.92336 1.02595 1.05513 1.23024 1.01748 1.00623 0.94955 1.21390 0.77320 1.04711 0.94860 1.22701 0.95278 1.05157 0.97880 1.23131 1.02717 0.91508 1.02789 1.23031 0.92988 1.00520 1.04071 0.92862 1.00228 1.00143 0.88189 0.88468 0.92911 0.87394 0.89928 0.94925 0.85923 0.90861 0.87862 0.86884 0.89093 0.89517 0.87309 0.90051 0.86921 0.88871 0.88847 0.87134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.59 13.29 21.45 0.28 -60.30 16 2 C -0.01 -0.41 5.46 84.66 0.46 0.06 16 3 Si 0.97 44.86 29.54 68.60 2.03 46.89 16 4 H -0.25 -10.64 7.11 99.48 0.71 -9.93 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 7 C -0.54 -31.49 9.11 25.60 0.23 -31.25 16 8 H 0.08 4.01 7.74 -2.91 -0.02 3.98 16 9 C 0.04 2.53 4.26 29.85 0.13 2.66 16 10 C -0.11 -4.84 4.19 29.85 0.13 -4.72 16 11 C 0.51 20.94 7.67 87.66 0.67 21.61 16 12 O -0.59 -30.34 15.56 -3.04 -0.05 -30.39 16 13 N -0.61 -17.61 2.47 -821.81 -2.03 -19.64 16 14 C 0.12 3.01 5.36 86.38 0.46 3.47 16 15 C -0.10 -2.24 5.82 30.59 0.18 -2.06 16 16 C -0.15 -2.86 5.74 -10.79 -0.06 -2.93 16 17 C -0.20 -4.15 10.18 30.60 0.31 -3.84 16 18 C -0.17 -2.79 10.25 30.60 0.31 -2.47 16 19 C 0.14 2.86 5.49 86.38 0.47 3.33 16 20 C -0.19 -3.80 5.93 -10.79 -0.06 -3.86 16 21 C -0.16 -2.34 10.18 30.62 0.31 -2.03 16 22 C -0.17 -2.64 10.25 30.62 0.31 -2.33 16 23 H 0.26 15.80 8.31 -92.70 -0.77 15.03 16 24 H -0.02 -1.35 8.10 -2.39 -0.02 -1.37 16 25 H -0.02 -1.30 8.10 -2.39 -0.02 -1.31 16 26 H 0.10 3.77 7.40 -2.39 -0.02 3.75 16 27 H 0.10 3.76 8.03 -2.39 -0.02 3.74 16 28 H 0.05 1.65 7.42 -2.39 -0.02 1.63 16 29 H 0.11 1.92 8.07 -2.39 -0.02 1.90 16 30 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.03 1.00 7.88 -2.39 -0.02 0.98 16 32 H 0.12 1.88 8.07 -2.39 -0.02 1.86 16 33 H 0.07 1.85 8.03 -2.39 -0.02 1.83 16 34 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.09 1.83 6.44 -2.38 -0.02 1.81 16 38 H 0.11 1.54 7.81 -2.39 -0.02 1.52 16 39 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 40 H 0.11 1.18 8.03 -2.39 -0.02 1.17 16 41 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -77.46 356.66 5.04 -72.42 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: 0.95 Total: 15.39 kcal Atomic # 6 Polarization: -28.23 SS G_CDS: 3.86 Total: -24.37 kcal Atomic # 7 Polarization: -78.19 SS G_CDS: -1.75 Total: -79.94 kcal Atomic # 8 Polarization: -30.34 SS G_CDS: -0.05 Total: -30.39 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -77.46 5.04 -72.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598467730.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.101 kcal (2) G-P(sol) polarization free energy of solvation -77.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds