Wall clock time and date at job start Mon Mar 30 2020 07:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48500 * 109.46986 * 270.00107 * 3 2 1 5 5 H 1.48496 * 109.47029 * 30.00124 * 3 2 1 6 6 H 1.48499 * 109.47352 * 149.99954 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99806 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99686 * 179.72339 * 7 2 1 10 10 C 1.53001 * 109.46995 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47367 * 180.02562 * 10 9 7 12 12 C 1.50698 * 109.47366 * 179.97438 * 11 10 9 13 13 O 1.21287 * 119.99888 * 0.02562 * 12 11 10 14 14 N 1.34778 * 120.00117 * 179.97438 * 12 11 10 15 15 C 1.46509 * 119.99743 * 180.02562 * 14 12 11 16 16 C 1.53003 * 109.46808 * 179.97438 * 15 14 12 17 17 H 1.09000 * 109.61306 * 54.63901 * 16 15 14 18 18 C 1.53297 * 109.61786 * 294.09853 * 16 15 14 19 19 C 1.53782 * 107.93661 * 165.19494 * 18 16 15 20 20 C 1.52712 * 109.66595 * 55.96672 * 19 18 16 21 21 H 1.08999 * 115.39277 * 126.98366 * 20 19 18 22 22 C 1.53652 * 115.14826 * 268.38709 * 20 19 18 23 23 C 1.52070 * 120.52560 * 336.72482 * 20 19 18 24 24 H 1.08993 * 115.93225 * 151.10629 * 23 20 19 25 25 C 1.52074 * 120.01922 * 6.38890 * 23 20 19 26 26 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 28 28 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 29 29 H 1.08998 * 109.47065 * 300.00574 * 10 9 7 30 30 H 1.09006 * 109.46890 * 59.99833 * 10 9 7 31 31 H 1.08998 * 109.47353 * 300.00222 * 11 10 9 32 32 H 1.09001 * 109.47005 * 60.00203 * 11 10 9 33 33 H 0.96995 * 120.00110 * 359.97438 * 14 12 11 34 34 H 1.09001 * 109.46760 * 299.99277 * 15 14 12 35 35 H 1.09001 * 109.47427 * 59.99999 * 15 14 12 36 36 H 1.08996 * 109.61906 * 285.55542 * 18 16 15 37 37 H 1.09008 * 109.62171 * 46.09641 * 18 16 15 38 38 H 1.08998 * 111.06370 * 294.97930 * 19 18 16 39 39 H 1.08993 * 108.12160 * 175.13000 * 19 18 16 40 40 H 1.09000 * 117.53705 * 4.69197 * 22 20 19 41 41 H 1.09004 * 117.53927 * 219.44628 * 22 20 19 42 42 H 1.08998 * 109.27109 * 218.03245 * 25 23 20 43 43 H 1.09001 * 109.23810 * 98.54951 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 -0.0058 10 6 4.0216 -2.6365 -0.0031 11 6 5.5515 -2.6365 -0.0089 12 6 6.0539 -4.0573 -0.0056 13 8 5.2658 -4.9792 0.0002 14 7 7.3790 -4.3036 -0.0103 15 6 7.8673 -5.6849 -0.0077 16 6 9.3973 -5.6848 -0.0146 17 1 9.7670 -5.0877 0.8190 18 6 9.9060 -5.0998 -1.3371 19 6 11.3982 -4.7697 -1.1660 20 6 12.1542 -6.0210 -0.7247 21 1 13.0191 -6.2837 -1.3337 22 6 12.2846 -6.2029 0.7954 23 6 11.4252 -7.1568 -0.0238 24 1 11.8435 -8.1528 -0.1687 25 6 9.9112 -7.1189 0.1137 26 1 -0.4850 0.8401 0.0004 27 1 3.8712 -0.6827 -0.8987 28 1 3.8785 -0.6777 0.8813 29 1 3.6619 -3.1474 0.8900 30 1 3.6545 -3.1533 -0.8899 31 1 5.9115 -2.1255 -0.9018 32 1 5.9182 -2.1199 0.8781 33 1 8.0093 -3.5663 -0.0160 34 1 7.5077 -6.1957 0.8856 35 1 7.5004 -6.2017 -0.8944 36 1 9.7660 -5.8270 -2.1369 37 1 9.3572 -4.1869 -1.5687 38 1 11.5428 -3.9810 -0.4277 39 1 11.7840 -4.4354 -2.1290 40 1 11.7712 -5.4848 1.4348 41 1 13.2325 -6.5812 1.1783 42 1 9.6284 -7.5165 1.0884 43 1 9.4640 -7.7325 -0.6685 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600162309.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:03 Heat of formation + Delta-G solvation = -51.336549 kcal Electronic energy + Delta-G solvation = -19566.414808 eV Core-core repulsion = 16610.629582 eV Total energy + Delta-G solvation = -2955.785226 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.29162 -39.24168 -35.69379 -34.24338 -32.81563 -32.01590 -31.37449 -28.66994 -26.58000 -24.45075 -23.52920 -22.05575 -21.17986 -20.50808 -19.80499 -18.83031 -17.13029 -16.54346 -16.16045 -15.72797 -15.60488 -14.91857 -14.57815 -14.22326 -13.95932 -13.83543 -13.41957 -13.15027 -12.74091 -12.62275 -12.59339 -12.23965 -11.96944 -11.73966 -11.56564 -11.20557 -11.09753 -10.94964 -10.76098 -10.71589 -10.13941 -10.01478 -9.97624 -9.81426 -9.67111 -9.38384 -9.10462 -9.00723 -8.49005 -5.98656 -3.96233 2.91522 3.26712 3.33036 3.35942 3.40064 3.43128 4.19176 4.31583 4.32674 4.48943 4.55811 4.65423 4.76183 4.88038 5.07338 5.12907 5.14813 5.20920 5.34626 5.36325 5.41351 5.50117 5.58653 5.60259 5.64262 5.66595 5.71092 5.74454 5.83258 5.88783 5.93686 6.05637 6.15121 6.48266 6.59661 6.72675 6.95475 7.40760 7.48684 7.59144 7.85151 8.44688 8.61777 9.08371 9.63438 11.15086 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.042047 B = 0.002842 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.762770 B = 9851.004329 C =10291.600818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.064 3.936 3 Si 0.882 3.118 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.518 4.518 8 H 0.072 0.928 9 C -0.015 4.015 10 C -0.087 4.087 11 C -0.142 4.142 12 C 0.511 3.489 13 O -0.536 6.536 14 N -0.739 5.739 15 C 0.124 3.876 16 C -0.101 4.101 17 H 0.078 0.922 18 C -0.116 4.116 19 C -0.090 4.090 20 C -0.149 4.149 21 H 0.100 0.900 22 C -0.187 4.187 23 C -0.137 4.137 24 H 0.098 0.902 25 C -0.081 4.081 26 H 0.262 0.738 27 H 0.011 0.989 28 H 0.015 0.985 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.398 0.602 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.095 0.905 41 H 0.090 0.910 42 H 0.070 0.930 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.291 -11.251 -0.692 30.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.137 4.137 3 Si 0.709 3.291 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.556 4.556 8 H 0.091 0.909 9 C -0.052 4.052 10 C -0.125 4.125 11 C -0.182 4.182 12 C 0.299 3.701 13 O -0.412 6.412 14 N -0.393 5.393 15 C 0.000 4.000 16 C -0.120 4.120 17 H 0.096 0.904 18 C -0.153 4.153 19 C -0.128 4.128 20 C -0.167 4.167 21 H 0.118 0.882 22 C -0.223 4.223 23 C -0.155 4.155 24 H 0.116 0.884 25 C -0.119 4.119 26 H 0.072 0.928 27 H 0.029 0.971 28 H 0.033 0.967 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.232 0.768 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.113 0.887 41 H 0.108 0.892 42 H 0.089 0.911 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 27.547 -11.818 -0.682 29.983 hybrid contribution 0.833 1.215 0.008 1.473 sum 28.380 -10.603 -0.674 30.303 Atomic orbital electron populations 1.69927 1.06307 1.26764 1.51411 1.25062 0.94750 0.99160 0.94733 0.86752 0.80315 0.83630 0.78394 1.20366 1.21471 1.19045 1.21174 0.89562 0.94540 1.50350 0.90937 1.19608 0.97298 0.92220 0.96070 1.21260 0.89280 0.99480 1.02523 1.21864 1.00689 0.91990 1.03613 1.21161 0.81462 0.92599 0.74899 1.90695 1.55234 1.46783 1.48452 1.46131 1.07535 1.08296 1.77351 1.21302 0.92617 0.83808 1.02294 1.21474 0.94124 0.97527 0.98847 0.90417 1.21837 0.95257 1.01221 0.97019 1.21234 0.94732 0.95427 1.01371 1.22262 1.01747 0.97822 0.94875 0.88179 1.23167 1.01475 1.03718 0.93987 1.21795 0.94279 0.95285 1.04121 0.88354 1.20805 0.92649 0.95941 1.02524 0.92815 0.97120 0.96674 0.92101 0.92125 0.89439 0.89446 0.76804 0.91674 0.91605 0.91172 0.91438 0.91300 0.91707 0.88666 0.89180 0.91127 0.90963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.59 13.96 55.43 0.77 -27.81 16 2 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 21.91 27.47 -169.99 -4.67 17.24 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 7 C -0.52 -15.29 9.66 -34.44 -0.33 -15.63 16 8 H 0.07 2.33 7.99 -52.49 -0.42 1.91 16 9 C -0.01 -0.35 4.04 -27.88 -0.11 -0.47 16 10 C -0.09 -1.84 4.44 -26.73 -0.12 -1.96 16 11 C -0.14 -2.21 5.70 -27.89 -0.16 -2.37 16 12 C 0.51 7.98 7.83 -10.99 -0.09 7.89 16 13 O -0.54 -10.73 15.98 5.55 0.09 -10.64 16 14 N -0.74 -8.21 5.15 -60.28 -0.31 -8.52 16 15 C 0.12 1.24 5.07 -4.04 -0.02 1.22 16 16 C -0.10 -0.73 1.96 -90.53 -0.18 -0.91 16 17 H 0.08 0.55 7.10 -51.93 -0.37 0.19 16 18 C -0.12 -0.80 5.26 -26.17 -0.14 -0.94 16 19 C -0.09 -0.56 5.83 -26.47 -0.15 -0.72 16 20 C -0.15 -0.94 6.22 -90.90 -0.57 -1.51 16 21 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 22 C -0.19 -1.16 9.61 -26.75 -0.26 -1.42 16 23 C -0.14 -0.88 6.00 -91.92 -0.55 -1.43 16 24 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 25 C -0.08 -0.55 5.22 -27.27 -0.14 -0.70 16 26 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 27 H 0.01 0.25 7.58 -51.93 -0.39 -0.15 16 28 H 0.01 0.36 7.19 -51.93 -0.37 -0.02 16 29 H 0.06 1.36 8.10 -51.93 -0.42 0.94 16 30 H 0.06 1.35 8.10 -51.93 -0.42 0.93 16 31 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 32 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.40 3.30 7.79 -40.82 -0.32 2.99 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.52 8.04 -51.93 -0.42 0.10 16 37 H 0.07 0.47 7.05 -51.92 -0.37 0.11 16 38 H 0.07 0.41 8.03 -51.93 -0.42 0.00 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.09 0.61 7.27 -51.93 -0.38 0.23 16 41 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 339.60 15.07 5.12 5.12 Total: -1.00 -33.84 339.60 -9.60 -43.44 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -7.69 Total: -1.70 kcal Atomic # 6 Polarization: -14.21 SS G_CDS: -2.91 Total: -17.13 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: 0.46 Total: -36.33 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.09 Total: -10.64 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.67 Total: 17.24 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.84 -9.60 -43.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600162309.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.896 kcal (2) G-P(sol) polarization free energy of solvation -33.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds