Wall clock time and date at job start Mon Mar 30 2020 07:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48500 * 109.46986 * 270.00107 * 3 2 1 5 5 H 1.48496 * 109.47029 * 30.00124 * 3 2 1 6 6 H 1.48499 * 109.47352 * 149.99954 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99806 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99686 * 179.72339 * 7 2 1 10 10 C 1.53001 * 109.46995 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47367 * 180.02562 * 10 9 7 12 12 C 1.50698 * 109.47366 * 179.97438 * 11 10 9 13 13 O 1.21287 * 119.99888 * 0.02562 * 12 11 10 14 14 N 1.34778 * 120.00117 * 179.97438 * 12 11 10 15 15 C 1.46509 * 119.99743 * 180.02562 * 14 12 11 16 16 C 1.53003 * 109.46808 * 179.97438 * 15 14 12 17 17 H 1.09000 * 109.61306 * 54.63901 * 16 15 14 18 18 C 1.53297 * 109.61786 * 294.09853 * 16 15 14 19 19 C 1.53782 * 107.93661 * 165.19494 * 18 16 15 20 20 C 1.52712 * 109.66595 * 55.96672 * 19 18 16 21 21 H 1.08999 * 115.39277 * 126.98366 * 20 19 18 22 22 C 1.53652 * 115.14826 * 268.38709 * 20 19 18 23 23 C 1.52070 * 120.52560 * 336.72482 * 20 19 18 24 24 H 1.08993 * 115.93225 * 151.10629 * 23 20 19 25 25 C 1.52074 * 120.01922 * 6.38890 * 23 20 19 26 26 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 28 28 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 29 29 H 1.08998 * 109.47065 * 300.00574 * 10 9 7 30 30 H 1.09006 * 109.46890 * 59.99833 * 10 9 7 31 31 H 1.08998 * 109.47353 * 300.00222 * 11 10 9 32 32 H 1.09001 * 109.47005 * 60.00203 * 11 10 9 33 33 H 0.96995 * 120.00110 * 359.97438 * 14 12 11 34 34 H 1.09001 * 109.46760 * 299.99277 * 15 14 12 35 35 H 1.09001 * 109.47427 * 59.99999 * 15 14 12 36 36 H 1.08996 * 109.61906 * 285.55542 * 18 16 15 37 37 H 1.09008 * 109.62171 * 46.09641 * 18 16 15 38 38 H 1.08998 * 111.06370 * 294.97930 * 19 18 16 39 39 H 1.08993 * 108.12160 * 175.13000 * 19 18 16 40 40 H 1.09000 * 117.53705 * 4.69197 * 22 20 19 41 41 H 1.09004 * 117.53927 * 219.44628 * 22 20 19 42 42 H 1.08998 * 109.27109 * 218.03245 * 25 23 20 43 43 H 1.09001 * 109.23810 * 98.54951 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 -0.0058 10 6 4.0216 -2.6365 -0.0031 11 6 5.5515 -2.6365 -0.0089 12 6 6.0539 -4.0573 -0.0056 13 8 5.2658 -4.9792 0.0002 14 7 7.3790 -4.3036 -0.0103 15 6 7.8673 -5.6849 -0.0077 16 6 9.3973 -5.6848 -0.0146 17 1 9.7670 -5.0877 0.8190 18 6 9.9060 -5.0998 -1.3371 19 6 11.3982 -4.7697 -1.1660 20 6 12.1542 -6.0210 -0.7247 21 1 13.0191 -6.2837 -1.3337 22 6 12.2846 -6.2029 0.7954 23 6 11.4252 -7.1568 -0.0238 24 1 11.8435 -8.1528 -0.1687 25 6 9.9112 -7.1189 0.1137 26 1 -0.4850 0.8401 0.0004 27 1 3.8712 -0.6827 -0.8987 28 1 3.8785 -0.6777 0.8813 29 1 3.6619 -3.1474 0.8900 30 1 3.6545 -3.1533 -0.8899 31 1 5.9115 -2.1255 -0.9018 32 1 5.9182 -2.1199 0.8781 33 1 8.0093 -3.5663 -0.0160 34 1 7.5077 -6.1957 0.8856 35 1 7.5004 -6.2017 -0.8944 36 1 9.7660 -5.8270 -2.1369 37 1 9.3572 -4.1869 -1.5687 38 1 11.5428 -3.9810 -0.4277 39 1 11.7840 -4.4354 -2.1290 40 1 11.7712 -5.4848 1.4348 41 1 13.2325 -6.5812 1.1783 42 1 9.6284 -7.5165 1.0884 43 1 9.4640 -7.7325 -0.6685 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600162309.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:03 Heat of formation + Delta-G solvation = -72.415057 kcal Electronic energy + Delta-G solvation = -19567.328841 eV Core-core repulsion = 16610.629582 eV Total energy + Delta-G solvation = -2956.699259 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.06277 -40.23971 -36.64405 -36.03219 -34.15566 -33.55905 -31.93631 -30.31973 -27.61346 -25.40931 -24.81088 -22.74663 -22.04509 -21.76517 -21.20397 -19.40459 -18.93586 -17.94924 -17.04446 -16.85796 -16.58488 -16.18722 -15.77299 -15.21638 -14.89027 -14.86373 -14.72361 -14.32545 -14.07638 -13.80601 -13.60114 -13.17648 -13.12129 -12.80583 -12.68730 -12.46497 -12.27416 -11.80688 -11.78009 -11.72477 -11.66377 -11.48174 -11.31974 -11.28908 -10.75846 -10.74114 -10.61150 -10.50886 -10.05460 -8.26877 -6.32543 1.39321 1.43090 1.55225 1.69477 2.25728 2.40116 2.87454 3.08177 3.65643 3.73310 3.78535 3.92366 4.03147 4.13521 4.16369 4.24510 4.27314 4.35880 4.54020 4.59672 4.66622 4.71907 4.74374 4.84364 4.93922 4.96790 4.99619 5.02416 5.05626 5.07293 5.17302 5.25111 5.32709 5.35296 5.39539 5.47560 5.54030 5.60010 5.61714 5.69313 6.31873 6.60256 6.76344 7.31225 7.32987 8.90867 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.042047 B = 0.002842 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.762770 B = 9851.004329 C =10291.600818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.005 4.005 3 Si 0.963 3.037 4 H -0.264 1.264 5 H -0.287 1.287 6 H -0.235 1.235 7 C -0.541 4.541 8 H 0.018 0.982 9 C -0.009 4.009 10 C -0.082 4.082 11 C -0.131 4.131 12 C 0.510 3.490 13 O -0.591 6.591 14 N -0.716 5.716 15 C 0.124 3.876 16 C -0.088 4.088 17 H 0.086 0.914 18 C -0.115 4.115 19 C -0.088 4.088 20 C -0.152 4.152 21 H 0.105 0.895 22 C -0.185 4.185 23 C -0.142 4.142 24 H 0.102 0.898 25 C -0.082 4.082 26 H 0.266 0.734 27 H 0.030 0.970 28 H 0.031 0.969 29 H 0.035 0.965 30 H 0.035 0.965 31 H 0.118 0.882 32 H 0.117 0.883 33 H 0.416 0.584 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.070 0.930 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.004 -9.358 -0.677 33.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.201 4.201 3 Si 0.785 3.215 4 H -0.189 1.189 5 H -0.213 1.213 6 H -0.158 1.158 7 C -0.579 4.579 8 H 0.037 0.963 9 C -0.046 4.046 10 C -0.120 4.120 11 C -0.171 4.171 12 C 0.298 3.702 13 O -0.471 6.471 14 N -0.369 5.369 15 C 0.000 4.000 16 C -0.107 4.107 17 H 0.104 0.896 18 C -0.152 4.152 19 C -0.125 4.125 20 C -0.170 4.170 21 H 0.123 0.877 22 C -0.222 4.222 23 C -0.161 4.161 24 H 0.120 0.880 25 C -0.120 4.120 26 H 0.075 0.925 27 H 0.048 0.952 28 H 0.049 0.951 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.136 0.864 32 H 0.135 0.865 33 H 0.254 0.746 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.113 0.887 41 H 0.114 0.886 42 H 0.089 0.911 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 31.331 -9.930 -0.667 32.874 hybrid contribution -0.389 0.502 -0.001 0.635 sum 30.942 -9.427 -0.668 32.353 Atomic orbital electron populations 1.70112 1.08719 1.28282 1.52729 1.26226 0.95767 1.04198 0.93862 0.85473 0.79666 0.76943 0.79397 1.18877 1.21259 1.15783 1.21573 0.92784 0.92814 1.50684 0.96335 1.19548 0.93409 0.94338 0.97347 1.21045 0.93658 0.97093 1.00190 1.21720 0.96186 0.92635 1.06515 1.21179 0.82457 0.92052 0.74466 1.90688 1.56908 1.48167 1.51353 1.45903 1.06324 1.09545 1.75137 1.21361 0.94570 0.82839 1.01218 1.21374 0.91677 0.98102 0.99531 0.89552 1.21823 0.95965 1.01053 0.96367 1.21230 0.93922 0.95501 1.01892 1.22339 1.01874 0.97727 0.95064 0.87714 1.23211 1.01618 1.03464 0.93939 1.21808 0.93845 0.95733 1.04681 0.87962 1.20794 0.93134 0.95559 1.02472 0.92516 0.95207 0.95066 0.94640 0.94631 0.86391 0.86491 0.74627 0.92782 0.92816 0.91834 0.91207 0.90677 0.91186 0.88668 0.88600 0.91149 0.91253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.25 13.96 21.45 0.30 -61.95 16 2 C 0.00 -0.29 5.47 84.66 0.46 0.18 16 3 Si 0.96 44.04 27.47 68.60 1.88 45.92 16 4 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 5 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 6 H -0.23 -9.53 6.54 99.48 0.65 -8.88 16 7 C -0.54 -32.78 9.66 25.60 0.25 -32.54 16 8 H 0.02 1.26 7.99 -2.92 -0.02 1.24 16 9 C -0.01 -0.43 4.04 29.85 0.12 -0.31 16 10 C -0.08 -3.44 4.44 30.59 0.14 -3.30 16 11 C -0.13 -3.73 5.70 29.85 0.17 -3.56 16 12 C 0.51 15.27 7.83 87.66 0.69 15.95 16 13 O -0.59 -24.11 15.98 -3.05 -0.05 -24.16 16 14 N -0.72 -14.30 5.15 -463.03 -2.38 -16.68 16 15 C 0.12 2.36 5.07 86.38 0.44 2.79 16 16 C -0.09 -1.11 1.96 -10.74 -0.02 -1.13 16 17 H 0.09 0.98 7.10 -2.39 -0.02 0.97 16 18 C -0.11 -1.32 5.26 30.96 0.16 -1.16 16 19 C -0.09 -0.86 5.83 30.76 0.18 -0.68 16 20 C -0.15 -1.58 6.22 -10.98 -0.07 -1.65 16 21 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 22 C -0.19 -1.90 9.61 30.58 0.29 -1.61 16 23 C -0.14 -1.59 6.00 -11.64 -0.07 -1.66 16 24 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 25 C -0.08 -1.00 5.22 30.25 0.16 -0.85 16 26 H 0.27 15.99 8.31 -92.71 -0.77 15.22 16 27 H 0.03 1.29 7.58 -2.39 -0.02 1.28 16 28 H 0.03 1.37 7.19 -2.39 -0.02 1.36 16 29 H 0.03 1.63 8.10 -2.39 -0.02 1.61 16 30 H 0.03 1.63 8.10 -2.38 -0.02 1.61 16 31 H 0.12 2.69 8.14 -2.39 -0.02 2.68 16 32 H 0.12 2.70 8.14 -2.39 -0.02 2.68 16 33 H 0.42 5.37 7.79 -92.71 -0.72 4.65 16 34 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.06 0.84 8.04 -2.39 -0.02 0.82 16 37 H 0.07 0.78 7.05 -2.38 -0.02 0.76 16 38 H 0.07 0.66 8.03 -2.39 -0.02 0.64 16 39 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.09 0.98 7.27 -2.39 -0.02 0.96 16 41 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -77.09 339.60 2.84 -74.25 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: 0.19 Total: 12.13 kcal Atomic # 6 Polarization: -32.41 SS G_CDS: 2.90 Total: -29.52 kcal Atomic # 7 Polarization: -76.54 SS G_CDS: -2.08 Total: -78.63 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: -0.05 Total: -24.16 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 1.88 Total: 45.92 kcal Total: -77.09 2.84 -74.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600162309.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.832 kcal (2) G-P(sol) polarization free energy of solvation -77.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds