Wall clock time and date at job start Mon Mar 30 2020 07:49:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31510 * 1
3 3 Si 1.86797 * 120.00353 * 2 1
4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1
5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1
6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1
7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3
8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1
9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1
10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2
11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7
12 12 C 1.50698 * 109.47592 * 179.97438 * 11 10 9
13 13 O 1.21286 * 119.99758 * 0.02562 * 12 11 10
14 14 N 1.34779 * 120.00201 * 179.97438 * 12 11 10
15 15 C 1.46499 * 119.99872 * 179.97438 * 14 12 11
16 16 C 1.52997 * 109.47012 * 180.02562 * 15 14 12
17 17 C 1.53010 * 109.47191 * 180.02562 * 16 15 14
18 18 H 1.09000 * 109.63669 * 304.57676 * 17 16 15
19 19 C 1.53018 * 109.64040 * 64.99680 * 17 16 15
20 20 C 1.50071 * 110.14627 * 169.12349 * 19 17 16
21 21 C 1.29443 * 124.07229 * 342.86676 * 20 19 17
22 22 C 1.50068 * 124.08001 * 0.45079 * 21 20 19
23 23 C 1.53019 * 110.14968 * 342.90126 * 22 21 20
24 24 H 0.97002 * 119.99768 * 359.97438 * 1 2 3
25 25 H 1.09002 * 109.47060 * 299.99817 * 9 7 2
26 26 H 1.09001 * 109.47380 * 59.99905 * 9 7 2
27 27 H 1.09002 * 109.47153 * 299.99998 * 10 9 7
28 28 H 1.08998 * 109.47533 * 59.99628 * 10 9 7
29 29 H 1.09002 * 109.47103 * 300.00247 * 11 10 9
30 30 H 1.09001 * 109.47066 * 60.00169 * 11 10 9
31 31 H 0.96992 * 120.00336 * 0.02562 * 14 12 11
32 32 H 1.09002 * 109.47391 * 300.00314 * 15 14 12
33 33 H 1.09001 * 109.47271 * 60.00533 * 15 14 12
34 34 H 1.09001 * 109.47230 * 299.99452 * 16 15 14
35 35 H 1.08988 * 109.47529 * 60.00003 * 16 15 14
36 36 H 1.09001 * 109.36338 * 289.32516 * 19 17 16
37 37 H 1.09004 * 109.36183 * 48.92008 * 19 17 16
38 38 H 1.07995 * 117.96980 * 162.84619 * 20 19 17
39 39 H 1.08003 * 117.96356 * 180.47004 * 21 20 19
40 40 H 1.08993 * 109.36007 * 103.09149 * 22 21 20
41 41 H 1.09002 * 109.35950 * 222.82510 * 22 21 20
42 42 H 1.08996 * 109.62901 * 289.72537 * 23 22 21
43 43 H 1.09003 * 109.64550 * 169.09937 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6176 0.0000
4 1 2.4967 2.0463 -1.4001
5 1 1.4467 2.6527 0.7000
6 1 3.5467 1.4401 0.7000
7 6 2.0045 -1.1941 0.0005
8 1 3.0845 -1.1941 0.0001
9 6 1.2509 -2.4992 0.0005
10 6 2.2451 -3.6621 0.0005
11 6 1.4801 -4.9871 0.0012
12 6 2.4593 -6.1326 0.0005
13 8 3.6518 -5.9110 0.0001
14 7 2.0100 -7.4033 0.0015
15 6 2.9620 -8.5168 0.0003
16 6 2.1970 -9.8418 0.0011
17 6 3.1912 -11.0048 0.0005
18 1 3.8714 -10.9048 -0.8453
19 6 3.9894 -10.9998 1.3060
20 6 4.7730 -12.2729 1.4376
21 6 4.5350 -13.3450 0.7526
22 6 3.4485 -13.4619 -0.2760
23 6 2.4306 -12.3332 -0.0981
24 1 -0.4850 0.8401 0.0004
25 1 0.6239 -2.5567 0.8903
26 1 0.6246 -2.5571 -0.8897
27 1 2.8718 -3.6044 -0.8895
28 1 2.8718 -3.6044 0.8904
29 1 0.8537 -5.0445 0.8914
30 1 0.8532 -5.0451 -0.8886
31 1 1.0564 -7.5805 0.0022
32 1 3.5874 -8.4593 -0.8906
33 1 3.5899 -8.4590 0.8894
34 1 1.5714 -9.8996 0.8918
35 1 1.5693 -9.8995 -0.8881
36 1 4.6747 -10.1521 1.3073
37 1 3.3037 -10.9088 2.1484
38 1 5.5862 -12.2959 2.1478
39 1 5.1568 -14.2095 0.9326
40 1 3.8859 -13.3997 -1.2723
41 1 2.9445 -14.4216 -0.1618
42 1 1.8587 -12.4966 0.8153
43 1 1.7581 -12.3077 -0.9555
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000600390539.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:49:11
Heat of formation + Delta-G solvation = -69.239864 kcal
Electronic energy + Delta-G solvation = -19084.649957 eV
Core-core repulsion = 16128.088385 eV
Total energy + Delta-G solvation = -2956.561572 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 265.178 amu
Computer time = 0.53 seconds
Orbital eigenvalues (eV)
-39.65185 -38.96143 -35.45736 -34.12078 -32.83815 -31.95255 -31.15409 -28.86581
-27.37621 -24.54865 -23.62643 -22.55870 -21.19638 -20.48850 -19.62531 -18.29902
-16.78451 -16.48548 -15.98310 -15.69490 -15.60699 -14.84286 -14.48393 -14.40602
-14.08111 -13.59348 -13.30297 -13.14008 -12.80639 -12.60787 -12.39517 -12.23306
-12.04835 -11.76246 -11.53093 -11.25078 -10.97496 -10.78020 -10.66953 -10.55804
-10.51137 -10.46459 -9.64323 -9.63934 -9.31213 -9.22964 -8.98216 -8.94965
-8.29694 -5.95432 -3.96594 1.97676 2.98529 3.34049 3.36487 3.42133
3.47353 4.29031 4.35533 4.40985 4.51419 4.77493 4.87376 4.97049
5.00558 5.10263 5.18699 5.22821 5.29407 5.40579 5.41549 5.48654
5.53312 5.63369 5.67330 5.73781 5.76308 5.81133 5.83612 5.93514
6.07946 6.30599 6.34119 6.54102 6.63485 6.76749 6.97281 7.20005
7.65720 7.74157 7.86930 8.05587 8.49399 8.51966 9.10543 9.67142
11.16078
Molecular weight = 265.18amu
Principal moments of inertia in cm(-1)
A = 0.062672 B = 0.002352 C = 0.002297
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 446.662068 B =11902.163786 C =12184.327699
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.898 5.898
2 C 0.055 3.945
3 Si 0.892 3.108
4 H -0.281 1.281
5 H -0.287 1.287
6 H -0.274 1.274
7 C -0.517 4.517
8 H 0.056 0.944
9 C 0.020 3.980
10 C -0.095 4.095
11 C -0.139 4.139
12 C 0.511 3.489
13 O -0.539 6.539
14 N -0.742 5.742
15 C 0.117 3.883
16 C -0.126 4.126
17 C -0.084 4.084
18 H 0.076 0.924
19 C -0.092 4.092
20 C -0.152 4.152
21 C -0.162 4.162
22 C -0.091 4.091
23 C -0.115 4.115
24 H 0.259 0.741
25 H 0.016 0.984
26 H 0.015 0.985
27 H 0.054 0.946
28 H 0.054 0.946
29 H 0.088 0.912
30 H 0.087 0.913
31 H 0.399 0.601
32 H 0.063 0.937
33 H 0.066 0.934
34 H 0.070 0.930
35 H 0.070 0.930
36 H 0.076 0.924
37 H 0.075 0.925
38 H 0.101 0.899
39 H 0.100 0.900
40 H 0.072 0.928
41 H 0.070 0.930
42 H 0.065 0.935
43 H 0.066 0.934
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.913 -28.274 0.625 28.431
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.538 5.538
2 C -0.146 4.146
3 Si 0.720 3.280
4 H -0.207 1.207
5 H -0.213 1.213
6 H -0.198 1.198
7 C -0.555 4.555
8 H 0.074 0.926
9 C -0.017 4.017
10 C -0.133 4.133
11 C -0.179 4.179
12 C 0.299 3.701
13 O -0.415 6.415
14 N -0.395 5.395
15 C -0.007 4.007
16 C -0.164 4.164
17 C -0.103 4.103
18 H 0.094 0.906
19 C -0.129 4.129
20 C -0.170 4.170
21 C -0.180 4.180
22 C -0.128 4.128
23 C -0.152 4.152
24 H 0.069 0.931
25 H 0.034 0.966
26 H 0.034 0.966
27 H 0.073 0.927
28 H 0.073 0.927
29 H 0.106 0.894
30 H 0.106 0.894
31 H 0.232 0.768
32 H 0.081 0.919
33 H 0.084 0.916
34 H 0.088 0.912
35 H 0.089 0.911
36 H 0.094 0.906
37 H 0.093 0.907
38 H 0.120 0.880
39 H 0.118 0.882
40 H 0.091 0.909
41 H 0.088 0.912
42 H 0.083 0.917
43 H 0.085 0.915
Dipole moment (debyes) X Y Z Total
from point charges 3.655 -27.988 0.634 28.233
hybrid contribution 0.023 0.724 0.059 0.727
sum 3.678 -27.265 0.693 27.520
Atomic orbital electron populations
1.69963 1.06026 1.26500 1.51275 1.25028 0.94872 0.99259 0.95441
0.86586 0.79895 0.83411 0.78085 1.20691 1.21283 1.19845 1.21281
0.93197 0.91027 1.50033 0.92580 1.19137 0.93983 0.91486 0.97107
1.21440 0.98626 0.91587 1.01664 1.21840 0.98159 0.94167 1.03691
1.21267 0.90372 0.83798 0.74678 1.90674 1.17398 1.84783 1.48681
1.46151 1.10049 1.05920 1.77406 1.21337 0.92251 0.84836 1.02259
1.21858 0.98347 0.93291 1.02878 1.21146 0.96811 0.93947 0.98387
0.90566 1.20606 0.98513 0.96107 0.97638 1.22093 0.99900 0.95013
0.99950 1.22039 0.99351 0.98082 0.98540 1.20448 0.95274 0.98920
0.98191 1.21653 0.97486 0.93939 1.02134 0.93097 0.96602 0.96625
0.92736 0.92738 0.89407 0.89421 0.76757 0.91868 0.91604 0.91150
0.91085 0.90579 0.90656 0.88048 0.88214 0.90930 0.91189 0.91656
0.91506
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -27.31 13.29 55.43 0.74 -26.57 16
2 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16
3 Si 0.89 22.23 29.54 -169.99 -5.02 17.21 16
4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16
5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16
6 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16
7 C -0.52 -15.15 9.11 -34.44 -0.31 -15.47 16
8 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16
9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16
10 C -0.10 -2.10 4.44 -26.74 -0.12 -2.22 16
11 C -0.14 -2.33 5.70 -27.89 -0.16 -2.49 16
12 C 0.51 8.39 7.83 -10.99 -0.09 8.30 16
13 O -0.54 -11.11 15.98 5.55 0.09 -11.02 16
14 N -0.74 -8.75 5.56 -60.29 -0.33 -9.08 16
15 C 0.12 1.22 5.44 -4.04 -0.02 1.20 16
16 C -0.13 -0.90 4.80 -26.73 -0.13 -1.03 16
17 C -0.08 -0.59 2.24 -90.40 -0.20 -0.79 16
18 H 0.08 0.58 8.13 -51.93 -0.42 0.16 16
19 C -0.09 -0.69 4.91 -28.18 -0.14 -0.83 16
20 C -0.15 -1.14 9.80 -35.90 -0.35 -1.49 16
21 C -0.16 -1.14 9.80 -35.90 -0.35 -1.49 16
22 C -0.09 -0.56 6.12 -28.18 -0.17 -0.73 16
23 C -0.11 -0.71 5.31 -26.52 -0.14 -0.85 16
24 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16
25 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16
26 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16
27 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16
28 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16
29 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16
30 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16
31 H 0.40 3.52 8.47 -40.82 -0.35 3.17 16
32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16
33 H 0.07 0.75 6.83 -51.93 -0.35 0.40 16
34 H 0.07 0.47 8.11 -51.93 -0.42 0.05 16
35 H 0.07 0.47 8.14 -51.94 -0.42 0.04 16
36 H 0.08 0.62 7.13 -51.93 -0.37 0.25 16
37 H 0.08 0.55 8.08 -51.93 -0.42 0.13 16
38 H 0.10 0.70 8.06 -52.49 -0.42 0.28 16
39 H 0.10 0.61 8.06 -52.48 -0.42 0.19 16
40 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16
41 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16
42 H 0.06 0.41 8.12 -51.93 -0.42 -0.01 16
43 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16
LS Contribution 348.13 15.07 5.25 5.25
Total: -1.00 -33.50 348.13 -9.49 -42.99
By element:
Atomic # 1 Polarization: 5.01 SS G_CDS: -7.79 Total: -2.78 kcal
Atomic # 6 Polarization: -13.57 SS G_CDS: -2.42 Total: -15.99 kcal
Atomic # 7 Polarization: -36.06 SS G_CDS: 0.40 Total: -35.66 kcal
Atomic # 8 Polarization: -11.11 SS G_CDS: 0.09 Total: -11.02 kcal
Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal
Total LS contribution 5.25 Total: 5.25 kcal
Total: -33.50 -9.49 -42.99 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000600390539.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -26.250 kcal
(2) G-P(sol) polarization free energy of solvation -33.495 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.745 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.495 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.990 kcal
(6) G-S(sol) free energy of system = (1) + (5) -69.240 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.53 seconds