Wall clock time and date at job start Mon Mar 30 2020 07:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 C 1.50698 * 109.47592 * 179.97438 * 11 10 9 13 13 O 1.21286 * 119.99758 * 0.02562 * 12 11 10 14 14 N 1.34779 * 120.00201 * 179.97438 * 12 11 10 15 15 C 1.46499 * 119.99872 * 179.97438 * 14 12 11 16 16 C 1.52997 * 109.47012 * 180.02562 * 15 14 12 17 17 C 1.53010 * 109.47191 * 180.02562 * 16 15 14 18 18 H 1.09000 * 109.63669 * 304.57676 * 17 16 15 19 19 C 1.53018 * 109.64040 * 64.99680 * 17 16 15 20 20 C 1.50071 * 110.14627 * 169.12349 * 19 17 16 21 21 C 1.29443 * 124.07229 * 342.86676 * 20 19 17 22 22 C 1.50068 * 124.08001 * 0.45079 * 21 20 19 23 23 C 1.53019 * 110.14968 * 342.90126 * 22 21 20 24 24 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 26 26 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 27 27 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 28 28 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 29 29 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 30 30 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 31 31 H 0.96992 * 120.00336 * 0.02562 * 14 12 11 32 32 H 1.09002 * 109.47391 * 300.00314 * 15 14 12 33 33 H 1.09001 * 109.47271 * 60.00533 * 15 14 12 34 34 H 1.09001 * 109.47230 * 299.99452 * 16 15 14 35 35 H 1.08988 * 109.47529 * 60.00003 * 16 15 14 36 36 H 1.09001 * 109.36338 * 289.32516 * 19 17 16 37 37 H 1.09004 * 109.36183 * 48.92008 * 19 17 16 38 38 H 1.07995 * 117.96980 * 162.84619 * 20 19 17 39 39 H 1.08003 * 117.96356 * 180.47004 * 21 20 19 40 40 H 1.08993 * 109.36007 * 103.09149 * 22 21 20 41 41 H 1.09002 * 109.35950 * 222.82510 * 22 21 20 42 42 H 1.08996 * 109.62901 * 289.72537 * 23 22 21 43 43 H 1.09003 * 109.64550 * 169.09937 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 6 2.4593 -6.1326 0.0005 13 8 3.6518 -5.9110 0.0001 14 7 2.0100 -7.4033 0.0015 15 6 2.9620 -8.5168 0.0003 16 6 2.1970 -9.8418 0.0011 17 6 3.1912 -11.0048 0.0005 18 1 3.8714 -10.9048 -0.8453 19 6 3.9894 -10.9998 1.3060 20 6 4.7730 -12.2729 1.4376 21 6 4.5350 -13.3450 0.7526 22 6 3.4485 -13.4619 -0.2760 23 6 2.4306 -12.3332 -0.0981 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5567 0.8903 26 1 0.6246 -2.5571 -0.8897 27 1 2.8718 -3.6044 -0.8895 28 1 2.8718 -3.6044 0.8904 29 1 0.8537 -5.0445 0.8914 30 1 0.8532 -5.0451 -0.8886 31 1 1.0564 -7.5805 0.0022 32 1 3.5874 -8.4593 -0.8906 33 1 3.5899 -8.4590 0.8894 34 1 1.5714 -9.8996 0.8918 35 1 1.5693 -9.8995 -0.8881 36 1 4.6747 -10.1521 1.3073 37 1 3.3037 -10.9088 2.1484 38 1 5.5862 -12.2959 2.1478 39 1 5.1568 -14.2095 0.9326 40 1 3.8859 -13.3997 -1.2723 41 1 2.9445 -14.4216 -0.1618 42 1 1.8587 -12.4966 0.8153 43 1 1.7581 -12.3077 -0.9555 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600390539.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:49:11 Heat of formation + Delta-G solvation = -69.239864 kcal Electronic energy + Delta-G solvation = -19084.649957 eV Core-core repulsion = 16128.088385 eV Total energy + Delta-G solvation = -2956.561572 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.65185 -38.96143 -35.45736 -34.12078 -32.83815 -31.95255 -31.15409 -28.86581 -27.37621 -24.54865 -23.62643 -22.55870 -21.19638 -20.48850 -19.62531 -18.29902 -16.78451 -16.48548 -15.98310 -15.69490 -15.60699 -14.84286 -14.48393 -14.40602 -14.08111 -13.59348 -13.30297 -13.14008 -12.80639 -12.60787 -12.39517 -12.23306 -12.04835 -11.76246 -11.53093 -11.25078 -10.97496 -10.78020 -10.66953 -10.55804 -10.51137 -10.46459 -9.64323 -9.63934 -9.31213 -9.22964 -8.98216 -8.94965 -8.29694 -5.95432 -3.96594 1.97676 2.98529 3.34049 3.36487 3.42133 3.47353 4.29031 4.35533 4.40985 4.51419 4.77493 4.87376 4.97049 5.00558 5.10263 5.18699 5.22821 5.29407 5.40579 5.41549 5.48654 5.53312 5.63369 5.67330 5.73781 5.76308 5.81133 5.83612 5.93514 6.07946 6.30599 6.34119 6.54102 6.63485 6.76749 6.97281 7.20005 7.65720 7.74157 7.86930 8.05587 8.49399 8.51966 9.10543 9.67142 11.16078 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.062672 B = 0.002352 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.662068 B =11902.163786 C =12184.327699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.020 3.980 10 C -0.095 4.095 11 C -0.139 4.139 12 C 0.511 3.489 13 O -0.539 6.539 14 N -0.742 5.742 15 C 0.117 3.883 16 C -0.126 4.126 17 C -0.084 4.084 18 H 0.076 0.924 19 C -0.092 4.092 20 C -0.152 4.152 21 C -0.162 4.162 22 C -0.091 4.091 23 C -0.115 4.115 24 H 0.259 0.741 25 H 0.016 0.984 26 H 0.015 0.985 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.399 0.601 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.065 0.935 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.913 -28.274 0.625 28.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.555 4.555 8 H 0.074 0.926 9 C -0.017 4.017 10 C -0.133 4.133 11 C -0.179 4.179 12 C 0.299 3.701 13 O -0.415 6.415 14 N -0.395 5.395 15 C -0.007 4.007 16 C -0.164 4.164 17 C -0.103 4.103 18 H 0.094 0.906 19 C -0.129 4.129 20 C -0.170 4.170 21 C -0.180 4.180 22 C -0.128 4.128 23 C -0.152 4.152 24 H 0.069 0.931 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.232 0.768 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.120 0.880 39 H 0.118 0.882 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.083 0.917 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.655 -27.988 0.634 28.233 hybrid contribution 0.023 0.724 0.059 0.727 sum 3.678 -27.265 0.693 27.520 Atomic orbital electron populations 1.69963 1.06026 1.26500 1.51275 1.25028 0.94872 0.99259 0.95441 0.86586 0.79895 0.83411 0.78085 1.20691 1.21283 1.19845 1.21281 0.93197 0.91027 1.50033 0.92580 1.19137 0.93983 0.91486 0.97107 1.21440 0.98626 0.91587 1.01664 1.21840 0.98159 0.94167 1.03691 1.21267 0.90372 0.83798 0.74678 1.90674 1.17398 1.84783 1.48681 1.46151 1.10049 1.05920 1.77406 1.21337 0.92251 0.84836 1.02259 1.21858 0.98347 0.93291 1.02878 1.21146 0.96811 0.93947 0.98387 0.90566 1.20606 0.98513 0.96107 0.97638 1.22093 0.99900 0.95013 0.99950 1.22039 0.99351 0.98082 0.98540 1.20448 0.95274 0.98920 0.98191 1.21653 0.97486 0.93939 1.02134 0.93097 0.96602 0.96625 0.92736 0.92738 0.89407 0.89421 0.76757 0.91868 0.91604 0.91150 0.91085 0.90579 0.90656 0.88048 0.88214 0.90930 0.91189 0.91656 0.91506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.31 13.29 55.43 0.74 -26.57 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 22.23 29.54 -169.99 -5.02 17.21 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.52 -15.15 9.11 -34.44 -0.31 -15.47 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 10 C -0.10 -2.10 4.44 -26.74 -0.12 -2.22 16 11 C -0.14 -2.33 5.70 -27.89 -0.16 -2.49 16 12 C 0.51 8.39 7.83 -10.99 -0.09 8.30 16 13 O -0.54 -11.11 15.98 5.55 0.09 -11.02 16 14 N -0.74 -8.75 5.56 -60.29 -0.33 -9.08 16 15 C 0.12 1.22 5.44 -4.04 -0.02 1.20 16 16 C -0.13 -0.90 4.80 -26.73 -0.13 -1.03 16 17 C -0.08 -0.59 2.24 -90.40 -0.20 -0.79 16 18 H 0.08 0.58 8.13 -51.93 -0.42 0.16 16 19 C -0.09 -0.69 4.91 -28.18 -0.14 -0.83 16 20 C -0.15 -1.14 9.80 -35.90 -0.35 -1.49 16 21 C -0.16 -1.14 9.80 -35.90 -0.35 -1.49 16 22 C -0.09 -0.56 6.12 -28.18 -0.17 -0.73 16 23 C -0.11 -0.71 5.31 -26.52 -0.14 -0.85 16 24 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 28 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 29 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.40 3.52 8.47 -40.82 -0.35 3.17 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.75 6.83 -51.93 -0.35 0.40 16 34 H 0.07 0.47 8.11 -51.93 -0.42 0.05 16 35 H 0.07 0.47 8.14 -51.94 -0.42 0.04 16 36 H 0.08 0.62 7.13 -51.93 -0.37 0.25 16 37 H 0.08 0.55 8.08 -51.93 -0.42 0.13 16 38 H 0.10 0.70 8.06 -52.49 -0.42 0.28 16 39 H 0.10 0.61 8.06 -52.48 -0.42 0.19 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.06 0.41 8.12 -51.93 -0.42 -0.01 16 43 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 348.13 15.07 5.25 5.25 Total: -1.00 -33.50 348.13 -9.49 -42.99 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -7.79 Total: -2.78 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: -2.42 Total: -15.99 kcal Atomic # 7 Polarization: -36.06 SS G_CDS: 0.40 Total: -35.66 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.09 Total: -11.02 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.50 -9.49 -42.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600390539.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.250 kcal (2) G-P(sol) polarization free energy of solvation -33.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds