Wall clock time and date at job start Mon Mar 30 2020 07:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 C 1.50698 * 109.47592 * 179.97438 * 11 10 9 13 13 O 1.21286 * 119.99758 * 0.02562 * 12 11 10 14 14 N 1.34779 * 120.00201 * 179.97438 * 12 11 10 15 15 C 1.46499 * 119.99872 * 179.97438 * 14 12 11 16 16 C 1.52997 * 109.47012 * 180.02562 * 15 14 12 17 17 C 1.53010 * 109.47191 * 180.02562 * 16 15 14 18 18 H 1.09000 * 109.63669 * 304.57676 * 17 16 15 19 19 C 1.53018 * 109.64040 * 64.99680 * 17 16 15 20 20 C 1.50071 * 110.14627 * 169.12349 * 19 17 16 21 21 C 1.29443 * 124.07229 * 342.86676 * 20 19 17 22 22 C 1.50068 * 124.08001 * 0.45079 * 21 20 19 23 23 C 1.53019 * 110.14968 * 342.90126 * 22 21 20 24 24 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 26 26 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 27 27 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 28 28 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 29 29 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 30 30 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 31 31 H 0.96992 * 120.00336 * 0.02562 * 14 12 11 32 32 H 1.09002 * 109.47391 * 300.00314 * 15 14 12 33 33 H 1.09001 * 109.47271 * 60.00533 * 15 14 12 34 34 H 1.09001 * 109.47230 * 299.99452 * 16 15 14 35 35 H 1.08988 * 109.47529 * 60.00003 * 16 15 14 36 36 H 1.09001 * 109.36338 * 289.32516 * 19 17 16 37 37 H 1.09004 * 109.36183 * 48.92008 * 19 17 16 38 38 H 1.07995 * 117.96980 * 162.84619 * 20 19 17 39 39 H 1.08003 * 117.96356 * 180.47004 * 21 20 19 40 40 H 1.08993 * 109.36007 * 103.09149 * 22 21 20 41 41 H 1.09002 * 109.35950 * 222.82510 * 22 21 20 42 42 H 1.08996 * 109.62901 * 289.72537 * 23 22 21 43 43 H 1.09003 * 109.64550 * 169.09937 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 6 2.4593 -6.1326 0.0005 13 8 3.6518 -5.9110 0.0001 14 7 2.0100 -7.4033 0.0015 15 6 2.9620 -8.5168 0.0003 16 6 2.1970 -9.8418 0.0011 17 6 3.1912 -11.0048 0.0005 18 1 3.8714 -10.9048 -0.8453 19 6 3.9894 -10.9998 1.3060 20 6 4.7730 -12.2729 1.4376 21 6 4.5350 -13.3450 0.7526 22 6 3.4485 -13.4619 -0.2760 23 6 2.4306 -12.3332 -0.0981 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5567 0.8903 26 1 0.6246 -2.5571 -0.8897 27 1 2.8718 -3.6044 -0.8895 28 1 2.8718 -3.6044 0.8904 29 1 0.8537 -5.0445 0.8914 30 1 0.8532 -5.0451 -0.8886 31 1 1.0564 -7.5805 0.0022 32 1 3.5874 -8.4593 -0.8906 33 1 3.5899 -8.4590 0.8894 34 1 1.5714 -9.8996 0.8918 35 1 1.5693 -9.8995 -0.8881 36 1 4.6747 -10.1521 1.3073 37 1 3.3037 -10.9088 2.1484 38 1 5.5862 -12.2959 2.1478 39 1 5.1568 -14.2095 0.9326 40 1 3.8859 -13.3997 -1.2723 41 1 2.9445 -14.4216 -0.1618 42 1 1.8587 -12.4966 0.8153 43 1 1.7581 -12.3077 -0.9555 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600390539.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:49:10 Heat of formation + Delta-G solvation = -89.009006 kcal Electronic energy + Delta-G solvation = -19085.507211 eV Core-core repulsion = 16128.088385 eV Total energy + Delta-G solvation = -2957.418827 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.78804 -39.69089 -36.51411 -35.99386 -34.07345 -33.53975 -31.67649 -30.19595 -28.70497 -25.94900 -24.74050 -23.36364 -22.20676 -21.85541 -20.96738 -18.84442 -18.58718 -17.72311 -17.13812 -16.88253 -16.56232 -16.46730 -15.82134 -15.17671 -14.97515 -14.70154 -14.46859 -14.19698 -13.98009 -13.78316 -13.41355 -13.32066 -13.06626 -12.96108 -12.69136 -12.61167 -12.50873 -12.39035 -12.11071 -11.54859 -11.53154 -11.46085 -11.29443 -11.23152 -11.00169 -10.68877 -10.54053 -10.05375 -9.84785 -8.20033 -6.29849 1.39602 1.40792 1.42737 1.52391 1.68115 2.25923 2.42546 3.12712 3.71391 3.79306 3.84221 3.95533 4.19331 4.21790 4.28236 4.30954 4.42418 4.44700 4.51358 4.62171 4.72639 4.74484 4.83404 4.92814 4.98459 5.02284 5.07554 5.09544 5.12298 5.14797 5.20122 5.25317 5.36291 5.50121 5.53439 5.56135 5.76270 5.80563 5.87501 6.09276 6.28123 6.60492 6.85499 7.31544 7.38645 8.91415 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.062672 B = 0.002352 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.662068 B =11902.163786 C =12184.327699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.002 3.998 3 Si 0.962 3.038 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.548 4.548 8 H 0.050 0.950 9 C 0.026 3.974 10 C -0.083 4.083 11 C -0.130 4.130 12 C 0.512 3.488 13 O -0.589 6.589 14 N -0.719 5.719 15 C 0.116 3.884 16 C -0.113 4.113 17 C -0.082 4.082 18 H 0.068 0.932 19 C -0.092 4.092 20 C -0.168 4.168 21 C -0.163 4.163 22 C -0.094 4.094 23 C -0.111 4.111 24 H 0.265 0.735 25 H 0.002 0.998 26 H 0.002 0.998 27 H 0.039 0.961 28 H 0.039 0.961 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.417 0.583 32 H 0.051 0.949 33 H 0.055 0.945 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.063 0.937 37 H 0.077 0.923 38 H 0.102 0.898 39 H 0.107 0.893 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.066 0.934 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.240 -29.357 0.427 29.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.787 3.213 4 H -0.197 1.197 5 H -0.203 1.203 6 H -0.193 1.193 7 C -0.586 4.586 8 H 0.069 0.931 9 C -0.012 4.012 10 C -0.122 4.122 11 C -0.170 4.170 12 C 0.300 3.700 13 O -0.469 6.469 14 N -0.372 5.372 15 C -0.008 4.008 16 C -0.151 4.151 17 C -0.101 4.101 18 H 0.087 0.913 19 C -0.129 4.129 20 C -0.186 4.186 21 C -0.181 4.181 22 C -0.131 4.131 23 C -0.149 4.149 24 H 0.073 0.927 25 H 0.020 0.980 26 H 0.020 0.980 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.127 0.873 30 H 0.127 0.873 31 H 0.254 0.746 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.120 0.880 39 H 0.125 0.875 40 H 0.094 0.906 41 H 0.100 0.900 42 H 0.085 0.915 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.941 -29.119 0.434 29.271 hybrid contribution 0.223 1.000 0.123 1.032 sum 3.164 -28.119 0.557 28.302 Atomic orbital electron populations 1.70064 1.07454 1.27777 1.51572 1.25919 0.95872 1.03091 0.94730 0.85489 0.78601 0.78673 0.78546 1.19697 1.20255 1.19345 1.21695 0.93319 0.92856 1.50705 0.93142 1.19026 0.94203 0.92348 0.95574 1.21163 0.97647 0.93161 1.00183 1.21677 0.97908 0.91631 1.05787 1.21100 0.89341 0.85065 0.74454 1.90662 1.19208 1.85626 1.51387 1.45939 1.11424 1.04728 1.75119 1.21439 0.92298 0.85804 1.01213 1.21781 0.98095 0.91065 1.04140 1.21115 0.96706 0.94555 0.97695 0.91335 1.20594 0.98457 0.95751 0.98126 1.22178 1.00423 0.95312 1.00705 1.22252 0.99502 0.98075 0.98244 1.20510 0.95096 0.99540 0.97961 1.21637 0.97466 0.93085 1.02700 0.92656 0.97992 0.98008 0.94217 0.94242 0.87307 0.87310 0.74574 0.93091 0.92663 0.89953 0.89651 0.91809 0.90455 0.88012 0.87488 0.90639 0.90023 0.91510 0.90382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.64 13.29 21.45 0.28 -56.36 16 2 C 0.00 0.11 5.46 84.66 0.46 0.57 16 3 Si 0.96 45.58 29.54 68.60 2.03 47.60 16 4 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 7 C -0.55 -32.60 9.11 25.60 0.23 -32.36 16 8 H 0.05 2.98 7.74 -2.91 -0.02 2.95 16 9 C 0.03 1.37 4.97 29.85 0.15 1.52 16 10 C -0.08 -3.73 4.44 30.59 0.14 -3.59 16 11 C -0.13 -4.24 5.70 29.84 0.17 -4.07 16 12 C 0.51 16.41 7.83 87.66 0.69 17.09 16 13 O -0.59 -24.53 15.98 -3.05 -0.05 -24.58 16 14 N -0.72 -15.64 5.56 -463.06 -2.57 -18.21 16 15 C 0.12 2.29 5.44 86.38 0.47 2.76 16 16 C -0.11 -1.36 4.80 30.60 0.15 -1.22 16 17 C -0.08 -1.02 2.24 -10.65 -0.02 -1.05 16 18 H 0.07 0.98 8.13 -2.39 -0.02 0.96 16 19 C -0.09 -1.33 4.91 29.66 0.15 -1.19 16 20 C -0.17 -2.43 9.80 27.04 0.27 -2.16 16 21 C -0.16 -2.08 9.80 27.04 0.27 -1.82 16 22 C -0.09 -0.97 6.12 29.66 0.18 -0.79 16 23 C -0.11 -1.12 5.31 30.73 0.16 -0.96 16 24 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 25 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 26 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 27 H 0.04 1.86 8.10 -2.39 -0.02 1.84 16 28 H 0.04 1.85 8.10 -2.39 -0.02 1.83 16 29 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 30 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 31 H 0.42 6.09 8.47 -92.71 -0.79 5.31 16 32 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.06 1.24 6.83 -2.39 -0.02 1.23 16 34 H 0.08 0.85 8.11 -2.39 -0.02 0.83 16 35 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.06 1.06 7.13 -2.39 -0.02 1.04 16 37 H 0.08 1.06 8.08 -2.38 -0.02 1.04 16 38 H 0.10 1.39 8.06 -2.91 -0.02 1.37 16 39 H 0.11 1.17 8.06 -2.91 -0.02 1.15 16 40 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.07 0.67 8.12 -2.39 -0.02 0.65 16 43 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -72.70 348.13 3.31 -69.39 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: 0.17 Total: 9.42 kcal Atomic # 6 Polarization: -30.72 SS G_CDS: 3.45 Total: -27.27 kcal Atomic # 7 Polarization: -72.28 SS G_CDS: -2.29 Total: -74.57 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: -0.05 Total: -24.58 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.60 kcal Total: -72.70 3.31 -69.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600390539.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.620 kcal (2) G-P(sol) polarization free energy of solvation -72.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds