Wall clock time and date at job start Mon Mar 30 2020 08:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.51600 * 111.51639 * 2 1 4 4 C 1.52595 * 111.34277 * 190.55356 * 3 2 1 5 5 C 1.53067 * 108.99675 * 57.10115 * 4 3 2 6 6 C 1.52556 * 109.06853 * 292.48589 * 5 4 3 7 7 C 1.51836 * 111.37617 * 226.85104 * 2 1 3 8 8 H 1.08998 * 113.65097 * 27.00584 * 7 2 1 9 9 C 1.53793 * 83.27007 * 273.40182 * 7 2 1 10 10 N 1.46826 * 111.81010 * 129.45317 * 2 1 3 11 11 C 1.34770 * 136.31655 * 265.11819 * 10 2 1 12 12 O 1.21280 * 120.00128 * 359.97438 * 11 10 2 13 13 C 1.50702 * 120.00102 * 179.97438 * 11 10 2 14 14 C 1.52997 * 109.47269 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47117 * 179.97438 * 14 13 11 16 16 C 1.50705 * 109.47429 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99218 * 0.02562 * 16 15 14 18 18 C 1.37872 * 120.00254 * 180.02562 * 16 15 14 19 19 N 1.31517 * 120.00123 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00117 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.46856 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47508 * 119.99218 * 20 18 16 23 23 H 1.48501 * 109.47058 * 239.99784 * 20 18 16 24 24 H 1.08999 * 109.47489 * 69.67019 * 1 2 3 25 25 H 1.09005 * 109.46789 * 189.66419 * 1 2 3 26 26 H 1.08997 * 109.47485 * 309.66411 * 1 2 3 27 27 H 1.09004 * 109.10565 * 70.07308 * 3 2 1 28 28 H 1.08999 * 109.10730 * 311.03554 * 3 2 1 29 29 H 1.09005 * 109.55108 * 297.24939 * 4 3 2 30 30 H 1.09001 * 109.63052 * 177.00835 * 4 3 2 31 31 H 1.09003 * 109.53960 * 172.61042 * 5 4 3 32 32 H 1.08999 * 109.60636 * 52.40265 * 5 4 3 33 33 H 1.08997 * 109.12875 * 177.98245 * 6 5 4 34 34 H 1.09007 * 109.12951 * 297.08604 * 6 5 4 35 35 H 1.08997 * 113.50659 * 218.99961 * 9 7 2 36 36 H 1.08998 * 113.56226 * 88.44796 * 9 7 2 37 37 H 1.09004 * 109.46992 * 299.99840 * 13 11 10 38 38 H 1.09006 * 109.47213 * 59.99876 * 13 11 10 39 39 H 1.09004 * 109.47167 * 299.99958 * 14 13 11 40 40 H 1.08996 * 109.47065 * 59.99866 * 14 13 11 41 41 H 1.08998 * 109.47523 * 300.00459 * 15 14 13 42 42 H 1.09006 * 109.47137 * 60.00240 * 15 14 13 43 43 H 0.96993 * 120.00187 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0859 1.4104 0.0000 4 6 3.5895 1.4145 -0.2603 5 6 3.8665 0.7132 -1.5924 6 6 3.5299 -0.7684 -1.4550 7 6 2.0834 -0.9670 -1.0316 8 1 1.4144 -1.1364 -1.8752 9 6 1.9333 -1.9871 0.1095 10 7 2.0754 -0.8662 1.0526 11 6 2.5111 -0.7064 2.3178 12 8 2.4980 0.3932 2.8294 13 6 3.0144 -1.8940 3.0972 14 6 3.4456 -1.4419 4.4938 15 6 3.9561 -2.6477 5.2852 16 6 4.3802 -2.2027 6.6611 17 1 4.2939 -1.1637 6.9430 18 6 4.8784 -3.1218 7.5599 19 7 4.9831 -4.3871 7.2168 20 14 5.4035 -2.5702 9.2656 21 1 5.1862 -1.1074 9.4015 22 1 4.5992 -3.2875 10.2874 23 1 6.8429 -2.8769 9.4638 24 1 -0.3634 0.3570 -0.9636 25 1 -0.3633 -1.0131 0.1725 26 1 -0.3634 0.6559 0.7911 27 1 1.8902 1.8710 0.9683 28 1 1.5877 1.9903 -0.7769 29 1 4.1004 0.8850 0.5439 30 1 3.9502 2.4421 -0.3071 31 1 4.9194 0.8253 -1.8514 32 1 3.2496 1.1562 -2.3742 33 1 3.6927 -1.2620 -2.4131 34 1 4.1855 -1.2159 -0.7079 35 1 2.7517 -2.7051 0.1611 36 1 0.9527 -2.4620 0.1432 37 1 2.2197 -2.6349 3.1839 38 1 3.8665 -2.3340 2.5789 39 1 4.2405 -0.7011 4.4067 40 1 2.5939 -1.0017 5.0122 41 1 3.1610 -3.3882 5.3723 42 1 4.8077 -3.0884 4.7669 43 1 5.3332 -5.0337 7.8493 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600758228.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:02:26 Heat of formation + Delta-G solvation = -32.604680 kcal Electronic energy + Delta-G solvation = -20748.006887 eV Core-core repulsion = 17793.033936 eV Total energy + Delta-G solvation = -2954.972952 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.59520 -38.19553 -35.10120 -34.13550 -32.22004 -31.85920 -30.57602 -27.89425 -26.95485 -25.50850 -23.95151 -22.39194 -21.52070 -20.41670 -19.60943 -17.63270 -16.54085 -16.27222 -16.00845 -15.47817 -14.96326 -14.61626 -14.41370 -14.21995 -13.98278 -13.48239 -13.12555 -12.70388 -12.54710 -12.24377 -12.06377 -11.98419 -11.88747 -11.70991 -11.48475 -11.31422 -11.18878 -10.79829 -10.69812 -10.55686 -10.53940 -10.49204 -10.00894 -9.64087 -9.50051 -9.18318 -8.94106 -8.54136 -8.30113 -5.95574 -3.96787 2.88763 3.04682 3.35131 3.42249 3.48349 4.00142 4.42196 4.51247 4.61800 4.72756 4.85345 4.92219 5.08136 5.12257 5.18313 5.30340 5.33040 5.40549 5.43891 5.46630 5.59374 5.62180 5.71065 5.74781 5.78363 5.80904 5.86734 5.98567 6.05124 6.08335 6.17341 6.27679 6.31688 6.41447 6.76813 6.97660 7.19276 7.73465 7.86662 7.94417 8.05785 8.49584 8.53446 9.10547 9.67123 11.16046 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.033005 B = 0.003742 C = 0.003712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.152907 B = 7481.627208 C = 7541.507274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.165 3.835 3 C -0.115 4.115 4 C -0.114 4.114 5 C -0.116 4.116 6 C -0.098 4.098 7 C -0.115 4.115 8 H 0.093 0.907 9 C 0.099 3.901 10 N -0.642 5.642 11 C 0.543 3.457 12 O -0.535 6.535 13 C -0.131 4.131 14 C -0.094 4.094 15 C 0.020 3.980 16 C -0.516 4.516 17 H 0.056 0.944 18 C 0.055 3.945 19 N -0.898 5.898 20 Si 0.891 3.109 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.079 0.921 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.054 0.946 40 H 0.053 0.947 41 H 0.015 0.985 42 H 0.015 0.985 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.166 6.279 -22.257 24.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.080 3.920 3 C -0.153 4.153 4 C -0.152 4.152 5 C -0.153 4.153 6 C -0.136 4.136 7 C -0.134 4.134 8 H 0.111 0.889 9 C -0.024 4.024 10 N -0.380 5.380 11 C 0.335 3.665 12 O -0.410 6.410 13 C -0.171 4.171 14 C -0.132 4.132 15 C -0.017 4.017 16 C -0.554 4.554 17 H 0.075 0.925 18 C -0.145 4.145 19 N -0.538 5.538 20 Si 0.719 3.281 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.210 1.210 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.097 0.903 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.033 0.967 42 H 0.034 0.966 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.029 6.737 -21.635 23.725 hybrid contribution 0.172 0.000 1.019 1.033 sum -6.857 6.737 -20.616 22.748 Atomic orbital electron populations 1.22109 0.93896 1.02797 1.02476 1.21209 0.93597 0.92455 0.84719 1.21227 0.96135 0.94940 1.02991 1.21368 0.95968 1.00388 0.97441 1.21412 1.01047 0.95225 0.97664 1.21035 0.94131 0.97071 1.01353 1.22458 0.98074 0.96510 0.96329 0.88885 1.23196 1.01980 0.91416 0.85849 1.49953 1.64112 1.11725 1.12164 1.20817 0.76180 0.91354 0.78196 1.90660 1.55434 1.27492 1.67464 1.21790 1.01727 0.95393 0.98187 1.21445 1.00477 1.00260 0.91013 1.19133 0.96034 0.92176 0.94316 1.21315 1.41405 0.94596 0.98130 0.92534 1.25018 0.95920 0.94928 0.98657 1.69974 1.46709 1.01618 1.35488 0.86542 0.78180 0.78896 0.84457 1.19680 1.21042 1.21041 0.91306 0.91819 0.91879 0.90261 0.91522 0.91650 0.92044 0.91904 0.92037 0.91571 0.91550 0.90148 0.89919 0.89719 0.89722 0.92735 0.92782 0.96660 0.96644 0.93150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 8.95 37.15 0.33 -1.10 16 2 C 0.16 1.77 1.37 -139.67 -0.19 1.58 16 3 C -0.12 -1.32 4.75 -27.65 -0.13 -1.45 16 4 C -0.11 -1.29 5.81 -26.90 -0.16 -1.45 16 5 C -0.12 -1.02 5.90 -26.92 -0.16 -1.18 16 6 C -0.10 -0.83 5.60 -27.45 -0.15 -0.99 16 7 C -0.11 -0.96 3.92 -91.29 -0.36 -1.32 16 8 H 0.09 0.59 8.03 -51.93 -0.42 0.17 16 9 C 0.10 0.94 7.42 -9.99 -0.07 0.87 16 10 N -0.64 -8.51 3.11 -175.77 -0.55 -9.06 16 11 C 0.54 9.46 7.84 -10.99 -0.09 9.37 16 12 O -0.53 -11.18 15.45 5.56 0.09 -11.10 16 13 C -0.13 -2.34 5.54 -27.88 -0.15 -2.50 16 14 C -0.09 -2.12 4.44 -26.73 -0.12 -2.24 16 15 C 0.02 0.54 4.97 -27.88 -0.14 0.41 16 16 C -0.52 -15.23 9.11 -34.44 -0.31 -15.55 16 17 H 0.06 1.65 7.74 -52.49 -0.41 1.25 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.90 -27.46 13.29 55.43 0.74 -26.72 16 20 Si 0.89 22.31 29.54 -169.99 -5.02 17.29 16 21 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 24 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.55 6.68 -51.93 -0.35 0.21 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.08 1.14 7.20 -51.93 -0.37 0.77 16 28 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 29 H 0.06 0.93 7.92 -51.93 -0.41 0.52 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.67 7.63 -51.93 -0.40 0.27 16 35 H 0.08 0.72 7.90 -51.93 -0.41 0.31 16 36 H 0.08 0.66 7.01 -51.93 -0.36 0.30 16 37 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 38 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 39 H 0.05 1.27 8.10 -51.93 -0.42 0.85 16 40 H 0.05 1.27 8.10 -51.93 -0.42 0.85 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 337.92 15.07 5.09 5.09 Total: -1.00 -33.34 337.92 -9.20 -42.54 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -7.75 Total: -4.05 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: -1.80 Total: -14.00 kcal Atomic # 7 Polarization: -35.97 SS G_CDS: 0.19 Total: -35.78 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.09 Total: -11.10 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.34 -9.20 -42.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600758228.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.935 kcal (2) G-P(sol) polarization free energy of solvation -33.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds