Wall clock time and date at job start Mon Mar 30 2020 06:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99682 * 2 1 4 4 H 1.48507 * 109.46991 * 239.99833 * 3 2 1 5 5 H 1.48498 * 109.47276 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47240 * 120.00269 * 3 2 1 7 7 C 1.37875 * 120.00116 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99744 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00213 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46940 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47000 * 179.97438 * 10 9 7 12 12 C 1.50700 * 109.47208 * 179.97438 * 11 10 9 13 13 O 1.21283 * 119.99803 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99675 * 180.27843 * 12 11 10 15 15 C 1.48733 * 120.18822 * 359.72294 * 14 12 11 16 16 C 1.46524 * 109.86042 * 102.73825 * 15 14 12 17 17 C 1.53247 * 112.50054 * 58.40470 * 16 15 14 18 18 C 1.50169 * 107.63690 * 278.81063 * 17 16 15 19 19 C 1.53432 * 118.46413 * 308.37087 * 18 17 16 20 20 C 1.52923 * 60.13628 * 251.99369 * 19 18 17 21 21 C 1.55410 * 117.24772 * 94.07671 * 18 17 16 22 22 C 1.43356 * 120.18035 * 179.45341 * 14 12 11 23 23 H 0.97000 * 120.00572 * 359.97438 * 1 2 3 24 24 H 1.08995 * 109.46839 * 59.99740 * 9 7 2 25 25 H 1.09001 * 109.46310 * 299.99503 * 9 7 2 26 26 H 1.09000 * 109.47849 * 59.99708 * 10 9 7 27 27 H 1.08998 * 109.47443 * 299.99576 * 10 9 7 28 28 H 1.09009 * 109.46730 * 59.99606 * 11 10 9 29 29 H 1.08998 * 109.46846 * 300.00150 * 11 10 9 30 30 H 1.09003 * 109.40431 * 222.86132 * 15 14 12 31 31 H 1.09007 * 109.40640 * 342.69491 * 15 14 12 32 32 H 1.09002 * 108.87704 * 179.18542 * 16 15 14 33 33 H 1.09003 * 108.87365 * 297.72552 * 16 15 14 34 34 H 1.08999 * 109.82602 * 38.34489 * 17 16 15 35 35 H 1.09001 * 109.82780 * 159.27506 * 17 16 15 36 36 H 1.09002 * 117.48064 * 359.52323 * 19 18 17 37 37 H 1.08991 * 117.48357 * 144.46224 * 19 18 17 38 38 H 1.08993 * 117.48867 * 252.48240 * 20 19 18 39 39 H 1.09000 * 117.49203 * 107.51518 * 20 19 18 40 40 H 1.09000 * 109.50801 * 81.14813 * 21 18 17 41 41 H 1.09001 * 109.51167 * 201.23832 * 21 18 17 42 42 H 1.08998 * 108.67873 * 34.21108 * 22 14 12 43 43 H 1.09000 * 108.67183 * 152.12584 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2454 -3.6620 -0.0015 11 6 1.4805 -4.9871 -0.0020 12 6 2.4598 -6.1325 -0.0024 13 8 3.6522 -5.9108 -0.0027 14 7 2.0106 -7.4032 -0.0086 15 6 0.5492 -7.6798 -0.0088 16 6 0.1155 -8.0640 -1.3546 17 6 0.8565 -9.2985 -1.8795 18 6 2.1857 -8.8409 -2.4075 19 6 2.2137 -7.6815 -3.4121 20 6 2.5135 -9.1050 -3.8836 21 6 3.3983 -8.9092 -1.4379 22 6 2.9387 -8.4957 -0.0208 23 1 -0.4851 0.8400 0.0004 24 1 0.6248 -2.5563 -0.8919 25 1 0.6242 -2.5575 0.8881 26 1 2.8715 -3.6047 0.8890 27 1 2.8727 -3.6039 -0.8909 28 1 0.8541 -5.0447 -0.8923 29 1 0.8534 -5.0450 0.8877 30 1 0.3341 -8.4912 0.6866 31 1 0.0110 -6.7842 0.3021 32 1 -0.9533 -8.2768 -1.3334 33 1 0.2954 -7.2310 -2.0343 34 1 1.0063 -10.0119 -1.0692 35 1 0.2806 -9.7627 -2.6800 36 1 1.2581 -7.2456 -3.7039 37 1 3.0496 -6.9846 -3.3528 38 1 3.5467 -9.3447 -4.1344 39 1 1.7553 -9.6058 -4.4856 40 1 3.7878 -9.9269 -1.4133 41 1 4.1779 -8.2292 -1.7814 42 1 3.8185 -8.2127 0.5571 43 1 2.4715 -9.3558 0.4587 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600768817.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:14 Heat of formation + Delta-G solvation = -33.177191 kcal Electronic energy + Delta-G solvation = -20788.280301 eV Core-core repulsion = 17833.282524 eV Total energy + Delta-G solvation = -2954.997778 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.48524 -38.45690 -35.74263 -34.25904 -32.98925 -32.00750 -30.50013 -27.78774 -26.63509 -24.54570 -23.32615 -22.67221 -21.91830 -20.14402 -18.86380 -18.33567 -16.86567 -16.59609 -16.05738 -15.58724 -14.97649 -14.77981 -14.39692 -14.18439 -13.90816 -13.66813 -13.41260 -12.96991 -12.61066 -12.27348 -12.00020 -11.86118 -11.72494 -11.39104 -11.31074 -11.29322 -10.97176 -10.78740 -10.73424 -10.54667 -10.49844 -10.16912 -9.64641 -9.62029 -9.55795 -9.21071 -8.97998 -8.55433 -8.29066 -5.95032 -3.96260 2.97259 3.18199 3.38391 3.41613 3.45693 3.62072 4.45416 4.50917 4.56613 4.71761 4.80609 4.84691 4.94171 4.99264 5.16786 5.25708 5.40952 5.41835 5.49685 5.56294 5.61341 5.69170 5.71985 5.76556 5.80027 5.80193 5.85292 5.89314 5.99219 6.08476 6.13810 6.26310 6.33029 6.75662 6.77459 6.98717 7.20337 7.54712 7.73983 7.87338 8.05835 8.50038 8.53775 9.10561 9.67491 11.16461 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.029526 B = 0.003911 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.104741 B = 7157.334732 C = 7169.201722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.094 4.094 11 C -0.137 4.137 12 C 0.516 3.484 13 O -0.538 6.538 14 N -0.609 5.609 15 C 0.113 3.887 16 C -0.146 4.146 17 C -0.075 4.075 18 C -0.116 4.116 19 C -0.169 4.169 20 C -0.181 4.181 21 C -0.101 4.101 22 C 0.119 3.881 23 H 0.260 0.740 24 H 0.015 0.985 25 H 0.015 0.985 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.565 -22.369 -3.318 22.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.556 4.556 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.133 4.133 11 C -0.177 4.177 12 C 0.306 3.694 13 O -0.414 6.414 14 N -0.343 5.343 15 C -0.009 4.009 16 C -0.184 4.184 17 C -0.112 4.112 18 C -0.116 4.116 19 C -0.206 4.206 20 C -0.218 4.218 21 C -0.140 4.140 22 C -0.006 4.006 23 H 0.070 0.930 24 H 0.033 0.967 25 H 0.033 0.967 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.089 0.911 31 H 0.108 0.892 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.068 -22.114 -3.298 22.359 hybrid contribution 0.354 0.871 -0.175 0.956 sum 0.286 -21.243 -3.473 21.527 Atomic orbital electron populations 1.69950 1.06023 1.26605 1.51217 1.25007 0.94842 0.99186 0.95401 0.86664 0.79585 0.83119 0.78682 1.20244 1.21336 1.20238 1.21241 0.93143 0.91050 1.50162 0.92674 1.19119 0.93956 0.91469 0.97033 1.21442 0.98604 0.91644 1.01567 1.21852 0.98239 0.94258 1.03313 1.21194 0.90086 0.83624 0.74519 1.90657 1.17412 1.84305 1.49020 1.47723 1.06426 1.05674 1.74512 1.20806 0.80468 1.02356 0.97253 1.20993 1.00065 0.99178 0.98146 1.20558 0.93263 0.96986 1.00388 1.21574 0.96417 1.03486 0.90146 1.23139 1.03106 0.91217 1.03159 1.23183 1.02043 0.99869 0.96733 1.22353 0.95786 1.01145 0.94668 1.20824 0.94130 0.89371 0.96238 0.93046 0.96675 0.96664 0.92802 0.92832 0.89620 0.89589 0.91063 0.89184 0.90904 0.90765 0.91250 0.91584 0.88886 0.88905 0.89252 0.89185 0.91037 0.91355 0.90786 0.91552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.25 13.29 55.43 0.74 -26.51 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 22.20 29.54 -169.99 -5.02 17.18 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.52 -15.15 9.11 -34.44 -0.31 -15.46 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.09 -2.09 4.44 -26.73 -0.12 -2.21 16 11 C -0.14 -2.34 4.09 -27.88 -0.11 -2.46 16 12 C 0.52 8.61 7.67 -10.98 -0.08 8.52 16 13 O -0.54 -11.03 15.58 5.55 0.09 -10.94 16 14 N -0.61 -7.64 2.36 -176.90 -0.42 -8.06 16 15 C 0.11 1.07 5.57 -5.90 -0.03 1.03 16 16 C -0.15 -1.26 5.41 -29.69 -0.16 -1.42 16 17 C -0.07 -0.62 5.37 -28.01 -0.15 -0.77 16 18 C -0.12 -1.15 1.67 -154.16 -0.26 -1.41 16 19 C -0.17 -1.92 8.93 -26.55 -0.24 -2.16 16 20 C -0.18 -1.72 9.83 -26.51 -0.26 -1.98 16 21 C -0.10 -1.07 6.05 -24.61 -0.15 -1.22 16 22 C 0.12 1.34 5.04 -4.86 -0.02 1.31 16 23 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 24 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 1.24 8.10 -51.93 -0.42 0.82 16 27 H 0.05 1.24 8.10 -51.93 -0.42 0.82 16 28 H 0.09 1.35 8.10 -51.92 -0.42 0.93 16 29 H 0.09 1.34 7.51 -51.93 -0.39 0.95 16 30 H 0.07 0.54 8.04 -51.93 -0.42 0.12 16 31 H 0.09 0.85 6.13 -51.92 -0.32 0.54 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.77 5.96 -51.93 -0.31 0.46 16 34 H 0.07 0.52 7.25 -51.93 -0.38 0.14 16 35 H 0.07 0.50 7.90 -51.93 -0.41 0.09 16 36 H 0.09 1.03 7.07 -51.93 -0.37 0.66 16 37 H 0.09 1.23 7.98 -51.93 -0.41 0.82 16 38 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.09 0.76 8.06 -51.93 -0.42 0.34 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.87 7.82 -51.93 -0.41 0.46 16 42 H 0.07 0.96 7.45 -51.93 -0.39 0.57 16 43 H 0.07 0.58 7.44 -51.93 -0.39 0.20 16 LS Contribution 335.38 15.07 5.05 5.05 Total: -1.00 -32.82 335.38 -9.22 -42.04 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -7.52 Total: -2.52 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: -2.14 Total: -16.24 kcal Atomic # 7 Polarization: -34.89 SS G_CDS: 0.32 Total: -34.57 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.09 Total: -10.94 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.82 -9.22 -42.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600768817.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.861 kcal (2) G-P(sol) polarization free energy of solvation -32.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds