Wall clock time and date at job start Mon Mar 30 2020 06:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99682 * 2 1 4 4 H 1.48507 * 109.46991 * 239.99833 * 3 2 1 5 5 H 1.48498 * 109.47276 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47240 * 120.00269 * 3 2 1 7 7 C 1.37875 * 120.00116 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99744 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00213 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46940 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47000 * 179.97438 * 10 9 7 12 12 C 1.50700 * 109.47208 * 179.97438 * 11 10 9 13 13 O 1.21283 * 119.99803 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99675 * 180.27843 * 12 11 10 15 15 C 1.48733 * 120.18822 * 359.72294 * 14 12 11 16 16 C 1.46524 * 109.86042 * 102.73825 * 15 14 12 17 17 C 1.53247 * 112.50054 * 58.40470 * 16 15 14 18 18 C 1.50169 * 107.63690 * 278.81063 * 17 16 15 19 19 C 1.53432 * 118.46413 * 308.37087 * 18 17 16 20 20 C 1.52923 * 60.13628 * 251.99369 * 19 18 17 21 21 C 1.55410 * 117.24772 * 94.07671 * 18 17 16 22 22 C 1.43356 * 120.18035 * 179.45341 * 14 12 11 23 23 H 0.97000 * 120.00572 * 359.97438 * 1 2 3 24 24 H 1.08995 * 109.46839 * 59.99740 * 9 7 2 25 25 H 1.09001 * 109.46310 * 299.99503 * 9 7 2 26 26 H 1.09000 * 109.47849 * 59.99708 * 10 9 7 27 27 H 1.08998 * 109.47443 * 299.99576 * 10 9 7 28 28 H 1.09009 * 109.46730 * 59.99606 * 11 10 9 29 29 H 1.08998 * 109.46846 * 300.00150 * 11 10 9 30 30 H 1.09003 * 109.40431 * 222.86132 * 15 14 12 31 31 H 1.09007 * 109.40640 * 342.69491 * 15 14 12 32 32 H 1.09002 * 108.87704 * 179.18542 * 16 15 14 33 33 H 1.09003 * 108.87365 * 297.72552 * 16 15 14 34 34 H 1.08999 * 109.82602 * 38.34489 * 17 16 15 35 35 H 1.09001 * 109.82780 * 159.27506 * 17 16 15 36 36 H 1.09002 * 117.48064 * 359.52323 * 19 18 17 37 37 H 1.08991 * 117.48357 * 144.46224 * 19 18 17 38 38 H 1.08993 * 117.48867 * 252.48240 * 20 19 18 39 39 H 1.09000 * 117.49203 * 107.51518 * 20 19 18 40 40 H 1.09000 * 109.50801 * 81.14813 * 21 18 17 41 41 H 1.09001 * 109.51167 * 201.23832 * 21 18 17 42 42 H 1.08998 * 108.67873 * 34.21108 * 22 14 12 43 43 H 1.09000 * 108.67183 * 152.12584 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2454 -3.6620 -0.0015 11 6 1.4805 -4.9871 -0.0020 12 6 2.4598 -6.1325 -0.0024 13 8 3.6522 -5.9108 -0.0027 14 7 2.0106 -7.4032 -0.0086 15 6 0.5492 -7.6798 -0.0088 16 6 0.1155 -8.0640 -1.3546 17 6 0.8565 -9.2985 -1.8795 18 6 2.1857 -8.8409 -2.4075 19 6 2.2137 -7.6815 -3.4121 20 6 2.5135 -9.1050 -3.8836 21 6 3.3983 -8.9092 -1.4379 22 6 2.9387 -8.4957 -0.0208 23 1 -0.4851 0.8400 0.0004 24 1 0.6248 -2.5563 -0.8919 25 1 0.6242 -2.5575 0.8881 26 1 2.8715 -3.6047 0.8890 27 1 2.8727 -3.6039 -0.8909 28 1 0.8541 -5.0447 -0.8923 29 1 0.8534 -5.0450 0.8877 30 1 0.3341 -8.4912 0.6866 31 1 0.0110 -6.7842 0.3021 32 1 -0.9533 -8.2768 -1.3334 33 1 0.2954 -7.2310 -2.0343 34 1 1.0063 -10.0119 -1.0692 35 1 0.2806 -9.7627 -2.6800 36 1 1.2581 -7.2456 -3.7039 37 1 3.0496 -6.9846 -3.3528 38 1 3.5467 -9.3447 -4.1344 39 1 1.7553 -9.6058 -4.4856 40 1 3.7878 -9.9269 -1.4133 41 1 4.1779 -8.2292 -1.7814 42 1 3.8185 -8.2127 0.5571 43 1 2.4715 -9.3558 0.4587 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600768817.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:14 Heat of formation + Delta-G solvation = -51.340891 kcal Electronic energy + Delta-G solvation = -20789.067939 eV Core-core repulsion = 17833.282524 eV Total energy + Delta-G solvation = -2955.785415 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.52245 -39.53194 -36.76691 -36.17188 -34.21123 -33.65141 -31.59397 -29.53892 -27.45514 -26.17961 -24.49588 -23.73277 -22.86340 -21.91189 -19.88256 -19.31669 -18.49046 -17.93944 -17.37616 -16.83450 -16.48203 -16.00281 -15.82547 -15.26406 -14.83162 -14.70452 -14.64010 -14.23953 -13.87054 -13.84575 -13.62143 -13.07757 -12.79905 -12.71575 -12.60833 -12.49914 -12.43780 -12.15349 -12.11171 -11.70627 -11.59687 -11.54665 -11.42432 -11.25323 -10.98145 -10.64135 -10.54587 -10.42155 -9.60475 -8.20484 -6.30604 1.38821 1.41801 1.49962 1.67717 2.13012 2.41424 2.81757 3.12250 3.56890 3.71212 3.84070 3.97591 4.05214 4.15384 4.17174 4.20976 4.24489 4.31077 4.50362 4.64725 4.69946 4.74892 4.76664 4.83204 4.95031 4.96062 4.99918 5.03172 5.05774 5.07548 5.10904 5.17486 5.23932 5.29674 5.47575 5.50669 5.52228 5.73981 5.80469 5.85394 6.26495 6.42145 6.83873 7.28030 7.37931 8.90862 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.029526 B = 0.003911 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.104741 B = 7157.334732 C = 7169.201722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.006 3.994 3 Si 0.961 3.039 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.550 4.550 8 H 0.049 0.951 9 C 0.029 3.971 10 C -0.081 4.081 11 C -0.127 4.127 12 C 0.514 3.486 13 O -0.588 6.588 14 N -0.597 5.597 15 C 0.105 3.895 16 C -0.145 4.145 17 C -0.072 4.072 18 C -0.110 4.110 19 C -0.192 4.192 20 C -0.167 4.167 21 C -0.099 4.099 22 C 0.114 3.886 23 H 0.265 0.735 24 H 0.000 1.000 25 H 0.002 0.998 26 H 0.039 0.961 27 H 0.035 0.965 28 H 0.099 0.901 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.051 0.949 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.060 0.940 38 H 0.089 0.911 39 H 0.108 0.892 40 H 0.096 0.904 41 H 0.035 0.965 42 H 0.051 0.949 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.716 -24.247 -3.111 24.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.193 4.193 3 Si 0.785 3.215 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.588 4.588 8 H 0.067 0.933 9 C -0.008 4.008 10 C -0.119 4.119 11 C -0.167 4.167 12 C 0.304 3.696 13 O -0.468 6.468 14 N -0.329 5.329 15 C -0.015 4.015 16 C -0.183 4.183 17 C -0.109 4.109 18 C -0.110 4.110 19 C -0.229 4.229 20 C -0.204 4.204 21 C -0.138 4.138 22 C -0.010 4.010 23 H 0.074 0.926 24 H 0.018 0.982 25 H 0.021 0.979 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.118 0.882 29 H 0.124 0.876 30 H 0.123 0.877 31 H 0.108 0.892 32 H 0.117 0.883 33 H 0.070 0.930 34 H 0.106 0.894 35 H 0.098 0.902 36 H 0.111 0.889 37 H 0.079 0.921 38 H 0.107 0.893 39 H 0.126 0.874 40 H 0.115 0.885 41 H 0.054 0.946 42 H 0.069 0.931 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.253 -24.038 -3.093 24.268 hybrid contribution 0.684 1.414 -0.254 1.591 sum -0.569 -22.624 -3.347 22.878 Atomic orbital electron populations 1.70052 1.07451 1.27875 1.51415 1.25880 0.95825 1.02961 0.94589 0.85572 0.78434 0.78457 0.79023 1.19551 1.20160 1.19433 1.21648 0.93256 0.92864 1.51008 0.93266 1.18992 0.94104 0.92274 0.95476 1.21151 0.97608 0.93219 0.99917 1.21668 0.98016 0.91995 1.04982 1.21013 0.89042 0.85013 0.74536 1.90638 1.19159 1.85246 1.51772 1.47751 1.08406 1.04448 1.72297 1.21153 0.77915 1.03651 0.98773 1.20975 1.01718 0.98667 0.96907 1.20618 0.91840 0.97024 1.01404 1.21704 0.97207 1.01938 0.90148 1.23038 1.02002 0.91883 1.06022 1.23247 1.02622 0.97829 0.96706 1.22328 0.95425 1.01653 0.94369 1.20997 0.93537 0.89803 0.96633 0.92608 0.98190 0.97948 0.94258 0.94652 0.88232 0.87551 0.87729 0.89231 0.88292 0.92981 0.89400 0.90179 0.88867 0.92127 0.89293 0.87371 0.88529 0.94624 0.93055 0.87704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.74 13.29 21.45 0.28 -56.45 16 2 C 0.01 0.33 5.46 84.65 0.46 0.79 16 3 Si 0.96 45.72 29.54 68.60 2.03 47.75 16 4 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 7 C -0.55 -33.00 9.11 25.60 0.23 -32.77 16 8 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 9 C 0.03 1.55 4.97 29.85 0.15 1.70 16 10 C -0.08 -3.73 4.44 30.59 0.14 -3.59 16 11 C -0.13 -4.39 4.09 29.85 0.12 -4.26 16 12 C 0.51 17.40 7.67 87.66 0.67 18.07 16 13 O -0.59 -25.25 15.58 -3.04 -0.05 -25.30 16 14 N -0.60 -14.19 2.36 -831.97 -1.96 -16.14 16 15 C 0.11 1.65 5.57 83.95 0.47 2.12 16 16 C -0.14 -2.04 5.41 28.68 0.16 -1.89 16 17 C -0.07 -0.91 5.37 29.76 0.16 -0.75 16 18 C -0.11 -1.99 1.67 -51.95 -0.09 -2.08 16 19 C -0.19 -4.43 8.93 30.71 0.27 -4.15 16 20 C -0.17 -2.92 9.83 30.73 0.30 -2.62 16 21 C -0.10 -2.00 6.05 31.97 0.19 -1.80 16 22 C 0.11 2.38 5.04 87.51 0.44 2.82 16 23 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 24 H 0.00 -0.02 8.14 -2.39 -0.02 -0.03 16 25 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 26 H 0.04 1.89 8.10 -2.39 -0.02 1.87 16 27 H 0.03 1.72 8.10 -2.39 -0.02 1.70 16 28 H 0.10 3.15 8.10 -2.38 -0.02 3.13 16 29 H 0.11 3.23 7.51 -2.39 -0.02 3.21 16 30 H 0.10 1.04 8.04 -2.39 -0.02 1.02 16 31 H 0.09 1.45 6.13 -2.38 -0.01 1.44 16 32 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.05 1.00 5.96 -2.39 -0.01 0.98 16 34 H 0.09 0.85 7.25 -2.39 -0.02 0.83 16 35 H 0.08 0.85 7.90 -2.39 -0.02 0.84 16 36 H 0.09 2.09 7.07 -2.39 -0.02 2.08 16 37 H 0.06 1.76 7.98 -2.39 -0.02 1.74 16 38 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.11 1.52 8.06 -2.39 -0.02 1.50 16 40 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.03 0.95 7.82 -2.39 -0.02 0.93 16 42 H 0.05 1.33 7.45 -2.39 -0.02 1.31 16 43 H 0.10 1.41 7.44 -2.39 -0.02 1.40 16 Total: -1.00 -73.66 335.38 4.95 -68.71 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: 0.96 Total: 9.84 kcal Atomic # 6 Polarization: -32.08 SS G_CDS: 3.68 Total: -28.40 kcal Atomic # 7 Polarization: -70.92 SS G_CDS: -1.67 Total: -72.60 kcal Atomic # 8 Polarization: -25.25 SS G_CDS: -0.05 Total: -25.30 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -73.66 4.95 -68.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600768817.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.373 kcal (2) G-P(sol) polarization free energy of solvation -73.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds