Wall clock time and date at job start Mon Mar 30 2020 07:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 120.00178 * 2 1 4 4 H 1.48500 * 109.46927 * 270.00207 * 3 2 1 5 5 H 1.48498 * 109.47123 * 30.00281 * 3 2 1 6 6 H 1.48498 * 109.46827 * 149.99982 * 3 2 1 7 7 C 1.37882 * 119.99900 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99759 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00151 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47242 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47303 * 179.97438 * 10 9 7 12 12 C 1.50698 * 109.47004 * 179.97438 * 11 10 9 13 13 O 1.21283 * 120.00472 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99538 * 179.97438 * 12 11 10 15 15 C 1.46499 * 119.99665 * 179.72653 * 14 12 11 16 16 C 1.53004 * 109.47198 * 180.27868 * 15 14 12 17 17 H 1.08992 * 110.05072 * 304.96822 * 16 15 14 18 18 C 1.54389 * 110.06941 * 66.45489 * 16 15 14 19 19 C 1.54920 * 104.22406 * 142.78242 * 18 16 15 20 20 C 1.54989 * 102.82040 * 322.27994 * 19 18 16 21 21 C 1.53482 * 110.06981 * 183.42133 * 16 15 14 22 22 C 1.52572 * 121.04620 * 96.57000 * 21 16 15 23 23 C 1.52553 * 121.08968 * 24.85893 * 21 16 15 24 24 H 0.96998 * 119.99307 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.47079 * 59.99497 * 9 7 2 26 26 H 1.09001 * 109.46874 * 299.99485 * 9 7 2 27 27 H 1.09000 * 109.47250 * 59.99058 * 10 9 7 28 28 H 1.09007 * 109.46897 * 299.99936 * 10 9 7 29 29 H 1.09003 * 109.46690 * 59.99829 * 11 10 9 30 30 H 1.08993 * 109.46773 * 300.00165 * 11 10 9 31 31 H 0.97001 * 120.00485 * 0.02562 * 14 12 11 32 32 H 1.09009 * 109.47454 * 300.27637 * 15 14 12 33 33 H 1.08998 * 109.47492 * 60.27932 * 15 14 12 34 34 H 1.08999 * 110.47821 * 261.47016 * 18 16 15 35 35 H 1.08998 * 110.47877 * 23.96305 * 18 16 15 36 36 H 1.08999 * 110.74172 * 80.61107 * 19 18 16 37 37 H 1.08994 * 110.74574 * 203.94623 * 19 18 16 38 38 H 1.09005 * 110.51103 * 156.21546 * 20 19 18 39 39 H 1.08999 * 110.51513 * 278.79114 * 20 19 18 40 40 H 1.08997 * 117.51488 * 356.96687 * 22 21 16 41 41 H 1.08998 * 117.50872 * 142.06092 * 22 21 16 42 42 H 1.08996 * 117.50832 * 217.88106 * 23 21 16 43 43 H 1.09000 * 117.50330 * 2.92344 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0215 -2.6367 -0.0014 11 6 5.5515 -2.6367 -0.0014 12 6 6.0537 -4.0576 -0.0022 13 8 5.2656 -4.9794 -0.0031 14 7 7.3788 -4.3038 -0.0029 15 6 7.8671 -5.6851 0.0024 16 6 9.3971 -5.6851 0.0074 17 1 9.7735 -5.1006 -0.8319 18 6 9.9226 -5.1023 1.3370 19 6 11.1754 -5.9553 1.6578 20 6 10.7520 -7.3741 1.1997 21 6 9.9240 -7.1244 -0.0730 22 6 10.3388 -7.7371 -1.4073 23 6 9.0829 -8.2379 -0.6894 24 1 -0.4849 0.8401 0.0004 25 1 3.8745 -0.6809 0.8904 26 1 3.8752 -0.6798 -0.8895 27 1 3.6584 -3.1496 -0.8920 28 1 3.6578 -3.1515 0.8880 29 1 5.9148 -2.1237 0.8891 30 1 5.9147 -2.1221 -0.8909 31 1 8.0092 -3.5666 -0.0025 32 1 7.5008 -6.1966 0.8927 33 1 7.5067 -6.2013 -0.8873 34 1 10.1962 -4.0546 1.2124 35 1 9.1745 -5.2093 2.1224 36 1 12.0363 -5.6064 1.0875 37 1 11.3880 -5.9422 2.7267 38 1 11.6293 -7.9796 0.9719 39 1 10.1440 -7.8569 1.9647 40 1 10.1992 -7.1331 -2.3038 41 1 11.2108 -8.3911 -1.4116 42 1 9.1287 -9.2213 -0.2215 43 1 8.1169 -7.9633 -1.1131 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600801051.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:35 Heat of formation + Delta-G solvation = -46.899785 kcal Electronic energy + Delta-G solvation = -19639.500242 eV Core-core repulsion = 16683.907408 eV Total energy + Delta-G solvation = -2955.592834 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.19897 -39.08315 -35.14774 -34.29393 -34.03450 -32.07330 -30.30827 -28.26377 -26.47176 -24.54750 -23.26778 -22.57579 -21.07367 -20.42587 -19.86483 -18.69984 -16.88875 -16.48530 -16.34752 -15.75945 -15.35501 -15.20219 -14.85464 -14.24954 -14.15376 -13.42723 -13.37623 -12.93546 -12.81710 -12.60039 -12.29845 -11.97266 -11.78192 -11.57774 -11.43613 -11.20257 -11.07257 -10.95241 -10.94112 -10.75992 -10.55300 -9.97858 -9.97205 -9.81117 -9.67247 -9.37449 -9.10311 -8.99754 -8.48938 -5.98665 -3.96234 2.91931 3.22687 3.33075 3.40039 3.43141 3.44348 4.04823 4.23089 4.46188 4.48982 4.52308 4.75194 4.83906 4.91284 5.09423 5.11754 5.19314 5.33824 5.34674 5.41291 5.47781 5.51338 5.57771 5.59099 5.62874 5.64637 5.70119 5.76148 5.82435 5.89352 5.91286 6.03018 6.15207 6.48703 6.59770 6.72823 6.95571 7.40832 7.48799 7.59976 7.85203 8.45180 8.61820 9.08352 9.63462 11.15110 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.040709 B = 0.002945 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.639402 B = 9505.570816 C = 9884.745822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.064 3.936 3 Si 0.882 3.118 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.518 4.518 8 H 0.072 0.928 9 C -0.014 4.014 10 C -0.087 4.087 11 C -0.142 4.142 12 C 0.511 3.489 13 O -0.536 6.536 14 N -0.740 5.740 15 C 0.127 3.873 16 C -0.068 4.068 17 H 0.079 0.921 18 C -0.120 4.120 19 C -0.122 4.122 20 C -0.088 4.088 21 C -0.123 4.123 22 C -0.168 4.168 23 C -0.172 4.172 24 H 0.262 0.738 25 H 0.015 0.985 26 H 0.010 0.990 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.398 0.602 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.138 -12.584 0.759 29.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.137 4.137 3 Si 0.709 3.291 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.556 4.556 8 H 0.091 0.909 9 C -0.052 4.052 10 C -0.125 4.125 11 C -0.181 4.181 12 C 0.299 3.701 13 O -0.412 6.412 14 N -0.393 5.393 15 C 0.003 3.997 16 C -0.087 4.087 17 H 0.098 0.902 18 C -0.158 4.158 19 C -0.159 4.159 20 C -0.126 4.126 21 C -0.124 4.124 22 C -0.205 4.205 23 C -0.209 4.209 24 H 0.072 0.928 25 H 0.033 0.967 26 H 0.029 0.971 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.232 0.768 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.113 0.887 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 26.386 -13.146 0.762 29.489 hybrid contribution 0.688 1.240 -0.095 1.422 sum 27.074 -11.906 0.668 29.584 Atomic orbital electron populations 1.69928 1.06311 1.26766 1.51421 1.25060 0.94747 0.99158 0.94728 0.86752 0.80318 0.83628 0.78400 1.20361 1.21468 1.19040 1.21177 0.89566 0.94543 1.50349 0.90939 1.19606 0.97292 0.92214 0.96068 1.21261 0.89286 0.99479 1.02516 1.21864 1.00681 0.91988 1.03617 1.21162 0.81461 0.92600 0.74902 1.90693 1.55227 1.46787 1.48470 1.46130 1.07548 1.08313 1.77342 1.21402 0.92412 0.83622 1.02256 1.21469 0.94094 0.94312 0.98826 0.90227 1.22465 0.97571 0.99173 0.96561 1.22450 0.97670 0.94917 1.00891 1.21884 0.98422 0.97214 0.95061 1.21645 1.02521 0.93491 0.94736 1.22999 0.98887 1.03511 0.95121 1.23034 0.95921 0.98209 1.03741 0.92812 0.96674 0.97125 0.92139 0.92099 0.89430 0.89448 0.76850 0.91496 0.91733 0.91360 0.90967 0.91414 0.91395 0.91672 0.91088 0.88775 0.88801 0.88666 0.88176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.63 13.96 55.43 0.77 -27.85 16 2 C 0.06 1.90 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 21.93 27.47 -169.99 -4.67 17.26 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 6 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 7 C -0.52 -15.32 9.66 -34.44 -0.33 -15.66 16 8 H 0.07 2.33 7.99 -52.49 -0.42 1.91 16 9 C -0.01 -0.35 4.04 -27.88 -0.11 -0.46 16 10 C -0.09 -1.85 4.44 -26.73 -0.12 -1.97 16 11 C -0.14 -2.22 5.70 -27.88 -0.16 -2.38 16 12 C 0.51 8.06 7.83 -10.99 -0.09 7.98 16 13 O -0.54 -10.81 15.98 5.55 0.09 -10.72 16 14 N -0.74 -8.41 5.39 -60.29 -0.32 -8.73 16 15 C 0.13 1.34 4.41 -4.04 -0.02 1.32 16 16 C -0.07 -0.53 2.84 -89.64 -0.25 -0.79 16 17 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 18 C -0.12 -0.85 6.03 -24.99 -0.15 -1.00 16 19 C -0.12 -0.76 6.91 -24.67 -0.17 -0.93 16 20 C -0.09 -0.59 6.58 -25.23 -0.17 -0.76 16 21 C -0.12 -0.92 2.26 -154.25 -0.35 -1.27 16 22 C -0.17 -1.18 10.23 -26.90 -0.28 -1.45 16 23 C -0.17 -1.34 9.62 -26.91 -0.26 -1.60 16 24 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 25 H 0.01 0.36 7.20 -51.93 -0.37 -0.02 16 26 H 0.01 0.25 7.57 -51.93 -0.39 -0.15 16 27 H 0.06 1.35 8.10 -51.93 -0.42 0.93 16 28 H 0.06 1.36 8.10 -51.93 -0.42 0.94 16 29 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 31 H 0.40 3.37 8.31 -40.82 -0.34 3.03 16 32 H 0.07 0.80 8.04 -51.92 -0.42 0.38 16 33 H 0.06 0.76 6.54 -51.93 -0.34 0.42 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.58 7.78 -51.93 -0.40 0.18 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.06 0.39 8.11 -51.93 -0.42 -0.03 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.10 0.87 6.44 -51.93 -0.33 0.54 16 LS Contribution 343.49 15.07 5.18 5.18 Total: -1.00 -33.91 343.49 -9.18 -43.09 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -7.68 Total: -1.06 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: -2.55 Total: -17.16 kcal Atomic # 7 Polarization: -37.03 SS G_CDS: 0.45 Total: -36.59 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.09 Total: -10.72 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.67 Total: 17.26 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.91 -9.18 -43.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600801051.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.811 kcal (2) G-P(sol) polarization free energy of solvation -33.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds