Wall clock time and date at job start Mon Mar 30 2020 07:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 120.00178 * 2 1 4 4 H 1.48500 * 109.46927 * 270.00207 * 3 2 1 5 5 H 1.48498 * 109.47123 * 30.00281 * 3 2 1 6 6 H 1.48498 * 109.46827 * 149.99982 * 3 2 1 7 7 C 1.37882 * 119.99900 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99759 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00151 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47242 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47303 * 179.97438 * 10 9 7 12 12 C 1.50698 * 109.47004 * 179.97438 * 11 10 9 13 13 O 1.21283 * 120.00472 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99538 * 179.97438 * 12 11 10 15 15 C 1.46499 * 119.99665 * 179.72653 * 14 12 11 16 16 C 1.53004 * 109.47198 * 180.27868 * 15 14 12 17 17 H 1.08992 * 110.05072 * 304.96822 * 16 15 14 18 18 C 1.54389 * 110.06941 * 66.45489 * 16 15 14 19 19 C 1.54920 * 104.22406 * 142.78242 * 18 16 15 20 20 C 1.54989 * 102.82040 * 322.27994 * 19 18 16 21 21 C 1.53482 * 110.06981 * 183.42133 * 16 15 14 22 22 C 1.52572 * 121.04620 * 96.57000 * 21 16 15 23 23 C 1.52553 * 121.08968 * 24.85893 * 21 16 15 24 24 H 0.96998 * 119.99307 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.47079 * 59.99497 * 9 7 2 26 26 H 1.09001 * 109.46874 * 299.99485 * 9 7 2 27 27 H 1.09000 * 109.47250 * 59.99058 * 10 9 7 28 28 H 1.09007 * 109.46897 * 299.99936 * 10 9 7 29 29 H 1.09003 * 109.46690 * 59.99829 * 11 10 9 30 30 H 1.08993 * 109.46773 * 300.00165 * 11 10 9 31 31 H 0.97001 * 120.00485 * 0.02562 * 14 12 11 32 32 H 1.09009 * 109.47454 * 300.27637 * 15 14 12 33 33 H 1.08998 * 109.47492 * 60.27932 * 15 14 12 34 34 H 1.08999 * 110.47821 * 261.47016 * 18 16 15 35 35 H 1.08998 * 110.47877 * 23.96305 * 18 16 15 36 36 H 1.08999 * 110.74172 * 80.61107 * 19 18 16 37 37 H 1.08994 * 110.74574 * 203.94623 * 19 18 16 38 38 H 1.09005 * 110.51103 * 156.21546 * 20 19 18 39 39 H 1.08999 * 110.51513 * 278.79114 * 20 19 18 40 40 H 1.08997 * 117.51488 * 356.96687 * 22 21 16 41 41 H 1.08998 * 117.50872 * 142.06092 * 22 21 16 42 42 H 1.08996 * 117.50832 * 217.88106 * 23 21 16 43 43 H 1.09000 * 117.50330 * 2.92344 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0215 -2.6367 -0.0014 11 6 5.5515 -2.6367 -0.0014 12 6 6.0537 -4.0576 -0.0022 13 8 5.2656 -4.9794 -0.0031 14 7 7.3788 -4.3038 -0.0029 15 6 7.8671 -5.6851 0.0024 16 6 9.3971 -5.6851 0.0074 17 1 9.7735 -5.1006 -0.8319 18 6 9.9226 -5.1023 1.3370 19 6 11.1754 -5.9553 1.6578 20 6 10.7520 -7.3741 1.1997 21 6 9.9240 -7.1244 -0.0730 22 6 10.3388 -7.7371 -1.4073 23 6 9.0829 -8.2379 -0.6894 24 1 -0.4849 0.8401 0.0004 25 1 3.8745 -0.6809 0.8904 26 1 3.8752 -0.6798 -0.8895 27 1 3.6584 -3.1496 -0.8920 28 1 3.6578 -3.1515 0.8880 29 1 5.9148 -2.1237 0.8891 30 1 5.9147 -2.1221 -0.8909 31 1 8.0092 -3.5666 -0.0025 32 1 7.5008 -6.1966 0.8927 33 1 7.5067 -6.2013 -0.8873 34 1 10.1962 -4.0546 1.2124 35 1 9.1745 -5.2093 2.1224 36 1 12.0363 -5.6064 1.0875 37 1 11.3880 -5.9422 2.7267 38 1 11.6293 -7.9796 0.9719 39 1 10.1440 -7.8569 1.9647 40 1 10.1992 -7.1331 -2.3038 41 1 11.2108 -8.3911 -1.4116 42 1 9.1287 -9.2213 -0.2215 43 1 8.1169 -7.9633 -1.1131 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600801051.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:34 Heat of formation + Delta-G solvation = -68.325059 kcal Electronic energy + Delta-G solvation = -19640.429311 eV Core-core repulsion = 16683.907408 eV Total energy + Delta-G solvation = -2956.521904 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.07104 -40.08665 -36.29398 -35.88602 -34.77668 -34.12470 -31.34605 -29.82123 -27.16232 -25.85055 -24.47231 -23.25039 -22.18708 -21.49973 -21.26788 -19.44673 -18.87190 -17.77259 -17.25631 -16.86982 -16.28320 -16.15505 -15.98419 -15.61840 -15.22631 -14.82821 -14.57642 -14.47368 -13.82828 -13.64010 -13.45882 -13.22301 -12.99880 -12.70077 -12.47445 -12.37144 -11.94988 -11.82170 -11.78021 -11.73737 -11.71546 -11.49181 -11.47468 -11.32352 -11.12226 -10.80095 -10.74553 -10.53183 -10.07573 -8.27360 -6.33123 1.39027 1.42840 1.55004 1.67791 2.22127 2.39806 2.82048 3.07735 3.45907 3.65105 3.83820 3.90827 3.96795 4.14916 4.19700 4.23485 4.27448 4.39538 4.45557 4.47461 4.75520 4.78958 4.82112 4.90714 4.91519 4.93445 4.97101 4.98115 5.04765 5.06831 5.11840 5.21094 5.25579 5.28492 5.33810 5.45314 5.50776 5.58331 5.60961 5.68762 6.31302 6.59178 6.75757 7.30374 7.31941 8.90462 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.040709 B = 0.002945 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.639402 B = 9505.570816 C = 9884.745822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.005 4.005 3 Si 0.964 3.036 4 H -0.264 1.264 5 H -0.286 1.286 6 H -0.235 1.235 7 C -0.541 4.541 8 H 0.018 0.982 9 C -0.009 4.009 10 C -0.082 4.082 11 C -0.130 4.130 12 C 0.510 3.490 13 O -0.591 6.591 14 N -0.716 5.716 15 C 0.129 3.871 16 C -0.060 4.060 17 H 0.091 0.909 18 C -0.120 4.120 19 C -0.118 4.118 20 C -0.089 4.089 21 C -0.128 4.128 22 C -0.158 4.158 23 C -0.187 4.187 24 H 0.266 0.734 25 H 0.031 0.969 26 H 0.030 0.970 27 H 0.034 0.966 28 H 0.034 0.966 29 H 0.118 0.882 30 H 0.118 0.882 31 H 0.417 0.583 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.083 0.917 35 H 0.059 0.941 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.095 0.905 41 H 0.106 0.894 42 H 0.099 0.901 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.215 -10.626 0.760 32.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.200 4.200 3 Si 0.785 3.215 4 H -0.189 1.189 5 H -0.212 1.212 6 H -0.158 1.158 7 C -0.579 4.579 8 H 0.036 0.964 9 C -0.046 4.046 10 C -0.120 4.120 11 C -0.170 4.170 12 C 0.298 3.702 13 O -0.472 6.472 14 N -0.369 5.369 15 C 0.006 3.994 16 C -0.079 4.079 17 H 0.109 0.891 18 C -0.157 4.157 19 C -0.155 4.155 20 C -0.127 4.127 21 C -0.128 4.128 22 C -0.195 4.195 23 C -0.223 4.223 24 H 0.075 0.925 25 H 0.050 0.950 26 H 0.048 0.952 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.136 0.864 30 H 0.136 0.864 31 H 0.254 0.746 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.102 0.898 35 H 0.078 0.922 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.114 0.886 41 H 0.124 0.876 42 H 0.117 0.883 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 30.531 -11.193 0.764 32.527 hybrid contribution -0.668 0.503 -0.100 0.842 sum 29.863 -10.690 0.663 31.726 Atomic orbital electron populations 1.70115 1.08735 1.28298 1.52724 1.26227 0.95765 1.04207 0.93831 0.85470 0.79674 0.76913 0.79404 1.18877 1.21233 1.15754 1.21576 0.92789 0.92819 1.50723 0.96366 1.19544 0.93404 0.94290 0.97365 1.21047 0.93648 0.97131 1.00164 1.21720 0.96186 0.92530 1.06558 1.21209 0.82436 0.92105 0.74442 1.90686 1.56910 1.48204 1.51356 1.45894 1.06382 1.09476 1.75145 1.21413 0.94499 0.82703 1.00814 1.21437 0.91574 0.94964 0.99930 0.89067 1.22474 0.97616 1.00222 0.95436 1.22447 0.97468 0.94161 1.01453 1.21907 0.98517 0.97847 0.94386 1.21735 1.02485 0.93067 0.95535 1.23057 0.98526 1.03175 0.94769 1.23024 0.95796 0.98756 1.04765 0.92501 0.95035 0.95191 0.94673 0.94660 0.86402 0.86374 0.74581 0.93219 0.93089 0.89805 0.92223 0.90470 0.90800 0.90707 0.91741 0.88615 0.87553 0.88290 0.89713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.39 13.96 21.45 0.30 -62.09 16 2 C 0.00 -0.27 5.47 84.66 0.46 0.19 16 3 Si 0.96 44.10 27.47 68.60 1.88 45.99 16 4 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 5 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 6 H -0.23 -9.52 6.54 99.48 0.65 -8.87 16 7 C -0.54 -32.91 9.66 25.60 0.25 -32.67 16 8 H 0.02 1.24 7.99 -2.91 -0.02 1.22 16 9 C -0.01 -0.41 4.04 29.85 0.12 -0.29 16 10 C -0.08 -3.46 4.44 30.59 0.14 -3.33 16 11 C -0.13 -3.75 5.70 29.85 0.17 -3.58 16 12 C 0.51 15.56 7.83 87.66 0.69 16.25 16 13 O -0.59 -24.53 15.98 -3.04 -0.05 -24.58 16 14 N -0.72 -14.84 5.39 -463.05 -2.49 -17.34 16 15 C 0.13 2.65 4.41 86.38 0.38 3.03 16 16 C -0.06 -0.82 2.84 -10.16 -0.03 -0.85 16 17 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 18 C -0.12 -1.38 6.03 31.72 0.19 -1.19 16 19 C -0.12 -1.16 6.91 31.93 0.22 -0.93 16 20 C -0.09 -1.02 6.58 31.57 0.21 -0.81 16 21 C -0.13 -1.72 2.26 -52.02 -0.12 -1.84 16 22 C -0.16 -1.94 10.23 30.48 0.31 -1.63 16 23 C -0.19 -2.85 9.62 30.48 0.29 -2.56 16 24 H 0.27 16.03 8.31 -92.71 -0.77 15.26 16 25 H 0.03 1.39 7.20 -2.39 -0.02 1.37 16 26 H 0.03 1.30 7.57 -2.39 -0.02 1.29 16 27 H 0.03 1.62 8.10 -2.39 -0.02 1.60 16 28 H 0.03 1.63 8.10 -2.38 -0.02 1.61 16 29 H 0.12 2.74 8.14 -2.39 -0.02 2.72 16 30 H 0.12 2.74 8.14 -2.39 -0.02 2.72 16 31 H 0.42 5.54 8.31 -92.71 -0.77 4.77 16 32 H 0.05 1.21 8.04 -2.38 -0.02 1.19 16 33 H 0.05 1.21 6.54 -2.39 -0.02 1.19 16 34 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.06 0.85 7.78 -2.39 -0.02 0.83 16 36 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.07 0.72 8.11 -2.38 -0.02 0.70 16 39 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.11 1.04 8.14 -2.39 -0.02 1.03 16 42 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.08 1.55 6.44 -2.39 -0.02 1.53 16 Total: -1.00 -77.82 343.49 3.07 -74.75 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: 0.14 Total: 13.49 kcal Atomic # 6 Polarization: -33.50 SS G_CDS: 3.28 Total: -30.22 kcal Atomic # 7 Polarization: -77.24 SS G_CDS: -2.19 Total: -79.43 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: -0.05 Total: -24.58 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 1.88 Total: 45.99 kcal Total: -77.82 3.07 -74.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600801051.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.424 kcal (2) G-P(sol) polarization free energy of solvation -77.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds