Wall clock time and date at job start Mon Mar 30 2020 07:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99688 * 2 1 4 4 H 1.48501 * 109.47334 * 240.00444 * 3 2 1 5 5 H 1.48504 * 109.47488 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47044 * 120.00197 * 3 2 1 7 7 C 1.37876 * 120.00556 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00053 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99239 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46724 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47211 * 179.97438 * 10 9 7 12 12 C 1.50704 * 109.46732 * 179.97438 * 11 10 9 13 13 O 1.21273 * 120.00537 * 0.02562 * 12 11 10 14 14 N 1.34775 * 119.99204 * 180.02562 * 12 11 10 15 15 C 1.46502 * 119.99595 * 179.97438 * 14 12 11 16 16 C 1.53004 * 109.47123 * 179.97438 * 15 14 12 17 17 H 1.09002 * 110.45783 * 54.29855 * 16 15 14 18 18 C 1.54993 * 110.51294 * 291.69239 * 16 15 14 19 19 C 1.54923 * 102.81802 * 203.64341 * 18 16 15 20 20 C 1.54377 * 104.22347 * 37.72544 * 19 18 16 21 21 C 1.53485 * 106.40265 * 336.44595 * 20 19 18 22 22 C 1.52563 * 121.05350 * 144.21105 * 21 20 19 23 23 C 1.52544 * 121.08685 * 215.92581 * 21 20 19 24 24 H 0.96996 * 120.00196 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47593 * 60.00350 * 9 7 2 26 26 H 1.09003 * 109.47298 * 299.99468 * 9 7 2 27 27 H 1.09006 * 109.47002 * 59.99736 * 10 9 7 28 28 H 1.09002 * 109.47353 * 299.99842 * 10 9 7 29 29 H 1.08997 * 109.46531 * 60.00203 * 11 10 9 30 30 H 1.08995 * 109.46584 * 299.99632 * 11 10 9 31 31 H 0.97003 * 120.00679 * 359.97438 * 14 12 11 32 32 H 1.08996 * 109.47436 * 60.00063 * 15 14 12 33 33 H 1.09002 * 109.47441 * 299.99842 * 15 14 12 34 34 H 1.09003 * 110.73897 * 321.97802 * 18 16 15 35 35 H 1.09005 * 110.73957 * 85.12386 * 18 16 15 36 36 H 1.08997 * 110.48005 * 156.41803 * 19 18 16 37 37 H 1.08999 * 110.47802 * 279.04281 * 19 18 16 38 38 H 1.09004 * 110.07211 * 95.67818 * 20 19 18 39 39 H 1.09002 * 110.07466 * 217.15224 * 20 19 18 40 40 H 1.09009 * 117.50637 * 217.93307 * 22 21 20 41 41 H 1.08996 * 117.51698 * 3.02340 * 22 21 20 42 42 H 1.09005 * 117.51161 * 357.02578 * 23 21 20 43 43 H 1.09002 * 117.51176 * 142.07388 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1027 1.6966 -1.2125 5 1 1.2840 2.7466 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9871 0.0001 12 6 2.4599 -6.1324 -0.0005 13 8 3.6522 -5.9108 -0.0009 14 7 2.0106 -7.4031 -0.0006 15 6 2.9627 -8.5166 -0.0018 16 6 2.1977 -9.8417 -0.0010 17 1 1.4901 -9.8736 -0.8296 18 6 1.4630 -10.0439 1.3486 19 6 1.2946 -11.5822 1.4212 20 6 2.6057 -12.1360 0.8232 21 6 3.1721 -11.0301 -0.0780 22 6 4.6761 -10.8010 -0.1919 23 6 3.8931 -11.3667 -1.3795 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6248 -2.5571 0.8897 27 1 2.8721 -3.6042 0.8895 28 1 2.8720 -3.6043 -0.8905 29 1 0.8535 -5.0450 -0.8897 30 1 0.8542 -5.0445 0.8903 31 1 1.0569 -7.5804 0.0001 32 1 3.5900 -8.4592 0.8876 33 1 3.5886 -8.4585 -0.8923 34 1 2.0719 -9.6826 2.1774 35 1 0.4931 -9.5465 1.3385 36 1 1.1811 -11.9051 2.4560 37 1 0.4393 -11.9007 0.8253 38 1 3.3122 -12.3672 1.6204 39 1 2.4002 -13.0304 0.2350 40 1 5.0243 -9.7705 -0.2635 41 1 5.3318 -11.4827 0.3497 42 1 4.0338 -12.4208 -1.6190 43 1 3.7259 -10.7089 -2.2324 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600801052.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:39 Heat of formation + Delta-G solvation = -51.285082 kcal Electronic energy + Delta-G solvation = -19591.081364 eV Core-core repulsion = 16635.298370 eV Total energy + Delta-G solvation = -2955.782995 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.16104 -39.02645 -35.02160 -34.22491 -34.02131 -32.02480 -30.23505 -27.80845 -26.32453 -24.54622 -23.34832 -22.65635 -21.01292 -20.46422 -19.82374 -18.64838 -16.78673 -16.42366 -16.00599 -15.62772 -15.30045 -15.01456 -14.84314 -14.40148 -14.27729 -13.41118 -13.27446 -13.00329 -12.71561 -12.23582 -12.16765 -11.82453 -11.73092 -11.43831 -11.30622 -11.19969 -11.03044 -10.90641 -10.75795 -10.58560 -10.52696 -10.51851 -9.91705 -9.64323 -9.63961 -9.23011 -8.99194 -8.95211 -8.29361 -5.95264 -3.96621 2.98762 3.31094 3.38358 3.41536 3.44802 3.46099 4.08000 4.26613 4.49826 4.51276 4.54962 4.78824 4.86555 4.93581 5.10034 5.17224 5.26732 5.38663 5.40656 5.42743 5.50705 5.55668 5.61724 5.65703 5.74111 5.74586 5.77308 5.80894 5.85338 5.90900 5.92516 6.05352 6.30548 6.54495 6.76747 6.97252 7.19963 7.65835 7.73980 7.87030 8.05677 8.49421 8.52052 9.10374 9.67151 11.16267 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.045560 B = 0.002784 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.429889 B =10056.109541 C =10442.036375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.095 4.095 11 C -0.139 4.139 12 C 0.511 3.489 13 O -0.539 6.539 14 N -0.740 5.740 15 C 0.126 3.874 16 C -0.069 4.069 17 H 0.084 0.916 18 C -0.118 4.118 19 C -0.123 4.123 20 C -0.087 4.087 21 C -0.123 4.123 22 C -0.172 4.172 23 C -0.170 4.170 24 H 0.260 0.740 25 H 0.015 0.985 26 H 0.015 0.985 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.398 0.602 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.101 0.899 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.788 -26.843 0.680 26.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.557 4.557 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.133 4.133 11 C -0.179 4.179 12 C 0.299 3.701 13 O -0.415 6.415 14 N -0.393 5.393 15 C 0.003 3.997 16 C -0.088 4.088 17 H 0.102 0.898 18 C -0.156 4.156 19 C -0.160 4.160 20 C -0.125 4.125 21 C -0.123 4.123 22 C -0.209 4.209 23 C -0.207 4.207 24 H 0.070 0.930 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.232 0.768 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.119 0.881 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.519 -26.555 0.684 26.683 hybrid contribution -0.022 0.767 -0.059 0.770 sum 2.496 -25.788 0.624 25.916 Atomic orbital electron populations 1.69951 1.06035 1.26632 1.51195 1.25018 0.94857 0.99230 0.95402 0.86652 0.79571 0.83071 0.78685 1.20228 1.21338 1.20232 1.21247 0.93167 0.91056 1.50190 0.92631 1.19128 0.93966 0.91456 0.97092 1.21444 0.98624 0.91582 1.01650 1.21842 0.98162 0.94171 1.03683 1.21257 0.90368 0.83759 0.74682 1.90669 1.17398 1.84768 1.48711 1.46135 1.10009 1.05824 1.77346 1.21357 0.91926 0.84393 1.02058 1.21705 0.96329 0.92064 0.98714 0.89787 1.22569 1.00346 0.95936 0.96728 1.22324 0.97309 0.95568 1.00804 1.21631 0.96734 0.96386 0.97724 1.21652 0.93474 0.97292 0.99923 1.23091 0.93125 1.02763 1.01950 1.22966 1.04103 1.01691 0.91971 0.93025 0.96623 0.96626 0.92741 0.92749 0.89436 0.89407 0.76790 0.91507 0.91890 0.90985 0.91201 0.91480 0.91508 0.91537 0.91629 0.88094 0.88768 0.88808 0.88690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.37 13.29 55.43 0.74 -26.63 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.24 29.54 -169.99 -5.02 17.22 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.52 -15.21 9.11 -34.44 -0.31 -15.52 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 9 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 10 C -0.09 -2.10 4.44 -26.73 -0.12 -2.21 16 11 C -0.14 -2.34 5.70 -27.88 -0.16 -2.50 16 12 C 0.51 8.41 7.83 -10.98 -0.09 8.33 16 13 O -0.54 -11.11 15.98 5.56 0.09 -11.02 16 14 N -0.74 -8.85 5.42 -60.29 -0.33 -9.17 16 15 C 0.13 1.38 3.86 -4.04 -0.02 1.37 16 16 C -0.07 -0.57 2.77 -89.11 -0.25 -0.82 16 17 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 18 C -0.12 -0.88 6.11 -24.66 -0.15 -1.03 16 19 C -0.12 -0.79 6.84 -24.99 -0.17 -0.96 16 20 C -0.09 -0.59 6.54 -25.76 -0.17 -0.76 16 21 C -0.12 -0.96 2.40 -154.26 -0.37 -1.33 16 22 C -0.17 -1.40 9.56 -26.91 -0.26 -1.66 16 23 C -0.17 -1.28 10.26 -26.92 -0.28 -1.56 16 24 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 25 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 28 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 29 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 30 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 31 H 0.40 3.65 8.39 -40.82 -0.34 3.30 16 32 H 0.07 0.82 7.93 -51.93 -0.41 0.40 16 33 H 0.06 0.76 7.37 -51.93 -0.38 0.38 16 34 H 0.07 0.60 7.99 -51.93 -0.42 0.19 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.10 0.93 6.44 -51.92 -0.33 0.60 16 41 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 347.63 15.07 5.24 5.24 Total: -1.00 -33.17 347.63 -9.62 -42.78 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -7.77 Total: -1.71 kcal Atomic # 6 Polarization: -14.14 SS G_CDS: -2.57 Total: -16.71 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: 0.41 Total: -35.80 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.09 Total: -11.02 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.17 -9.62 -42.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600801052.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.500 kcal (2) G-P(sol) polarization free energy of solvation -33.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds