Wall clock time and date at job start Mon Mar 30 2020 07:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99688 * 2 1 4 4 H 1.48501 * 109.47334 * 240.00444 * 3 2 1 5 5 H 1.48504 * 109.47488 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47044 * 120.00197 * 3 2 1 7 7 C 1.37876 * 120.00556 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00053 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99239 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46724 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47211 * 179.97438 * 10 9 7 12 12 C 1.50704 * 109.46732 * 179.97438 * 11 10 9 13 13 O 1.21273 * 120.00537 * 0.02562 * 12 11 10 14 14 N 1.34775 * 119.99204 * 180.02562 * 12 11 10 15 15 C 1.46502 * 119.99595 * 179.97438 * 14 12 11 16 16 C 1.53004 * 109.47123 * 179.97438 * 15 14 12 17 17 H 1.09002 * 110.45783 * 54.29855 * 16 15 14 18 18 C 1.54993 * 110.51294 * 291.69239 * 16 15 14 19 19 C 1.54923 * 102.81802 * 203.64341 * 18 16 15 20 20 C 1.54377 * 104.22347 * 37.72544 * 19 18 16 21 21 C 1.53485 * 106.40265 * 336.44595 * 20 19 18 22 22 C 1.52563 * 121.05350 * 144.21105 * 21 20 19 23 23 C 1.52544 * 121.08685 * 215.92581 * 21 20 19 24 24 H 0.96996 * 120.00196 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47593 * 60.00350 * 9 7 2 26 26 H 1.09003 * 109.47298 * 299.99468 * 9 7 2 27 27 H 1.09006 * 109.47002 * 59.99736 * 10 9 7 28 28 H 1.09002 * 109.47353 * 299.99842 * 10 9 7 29 29 H 1.08997 * 109.46531 * 60.00203 * 11 10 9 30 30 H 1.08995 * 109.46584 * 299.99632 * 11 10 9 31 31 H 0.97003 * 120.00679 * 359.97438 * 14 12 11 32 32 H 1.08996 * 109.47436 * 60.00063 * 15 14 12 33 33 H 1.09002 * 109.47441 * 299.99842 * 15 14 12 34 34 H 1.09003 * 110.73897 * 321.97802 * 18 16 15 35 35 H 1.09005 * 110.73957 * 85.12386 * 18 16 15 36 36 H 1.08997 * 110.48005 * 156.41803 * 19 18 16 37 37 H 1.08999 * 110.47802 * 279.04281 * 19 18 16 38 38 H 1.09004 * 110.07211 * 95.67818 * 20 19 18 39 39 H 1.09002 * 110.07466 * 217.15224 * 20 19 18 40 40 H 1.09009 * 117.50637 * 217.93307 * 22 21 20 41 41 H 1.08996 * 117.51698 * 3.02340 * 22 21 20 42 42 H 1.09005 * 117.51161 * 357.02578 * 23 21 20 43 43 H 1.09002 * 117.51176 * 142.07388 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1027 1.6966 -1.2125 5 1 1.2840 2.7466 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9871 0.0001 12 6 2.4599 -6.1324 -0.0005 13 8 3.6522 -5.9108 -0.0009 14 7 2.0106 -7.4031 -0.0006 15 6 2.9627 -8.5166 -0.0018 16 6 2.1977 -9.8417 -0.0010 17 1 1.4901 -9.8736 -0.8296 18 6 1.4630 -10.0439 1.3486 19 6 1.2946 -11.5822 1.4212 20 6 2.6057 -12.1360 0.8232 21 6 3.1721 -11.0301 -0.0780 22 6 4.6761 -10.8010 -0.1919 23 6 3.8931 -11.3667 -1.3795 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6248 -2.5571 0.8897 27 1 2.8721 -3.6042 0.8895 28 1 2.8720 -3.6043 -0.8905 29 1 0.8535 -5.0450 -0.8897 30 1 0.8542 -5.0445 0.8903 31 1 1.0569 -7.5804 0.0001 32 1 3.5900 -8.4592 0.8876 33 1 3.5886 -8.4585 -0.8923 34 1 2.0719 -9.6826 2.1774 35 1 0.4931 -9.5465 1.3385 36 1 1.1811 -11.9051 2.4560 37 1 0.4393 -11.9007 0.8253 38 1 3.3122 -12.3672 1.6204 39 1 2.4002 -13.0304 0.2350 40 1 5.0243 -9.7705 -0.2635 41 1 5.3318 -11.4827 0.3497 42 1 4.0338 -12.4208 -1.6190 43 1 3.7259 -10.7089 -2.2324 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600801052.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:38 Heat of formation + Delta-G solvation = -70.728645 kcal Electronic energy + Delta-G solvation = -19591.924501 eV Core-core repulsion = 16635.298370 eV Total energy + Delta-G solvation = -2956.626131 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.07356 -40.09385 -36.25941 -35.84934 -34.82839 -34.02348 -31.25591 -29.48344 -27.06775 -25.96232 -24.63808 -23.33085 -22.34536 -21.40782 -21.26574 -19.42019 -18.54382 -17.69710 -17.29911 -16.85431 -16.48618 -16.11844 -15.80174 -15.62614 -15.35059 -14.75876 -14.51671 -14.21744 -13.77649 -13.63133 -13.51494 -13.12091 -12.92416 -12.59343 -12.51178 -12.43733 -12.36800 -11.95995 -11.90223 -11.69411 -11.55404 -11.46542 -11.45562 -11.27785 -11.13212 -10.74796 -10.54147 -10.51537 -10.08867 -8.20247 -6.30331 1.39355 1.42361 1.50462 1.66391 2.21599 2.42158 2.81864 3.12562 3.45805 3.64578 3.84444 3.90517 3.95834 4.15083 4.21907 4.24565 4.28063 4.39546 4.43149 4.51853 4.76056 4.78880 4.80685 4.90519 4.92142 4.96763 4.97840 5.07054 5.10892 5.11787 5.19047 5.21911 5.24843 5.29853 5.33783 5.44272 5.51546 5.55277 5.75765 5.86992 6.27669 6.57294 6.84972 7.28821 7.38282 8.91143 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.045560 B = 0.002784 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.429889 B =10056.109541 C =10442.036375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.961 3.039 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.550 4.550 8 H 0.051 0.949 9 C 0.027 3.973 10 C -0.083 4.083 11 C -0.130 4.130 12 C 0.514 3.486 13 O -0.588 6.588 14 N -0.717 5.717 15 C 0.130 3.870 16 C -0.063 4.063 17 H 0.094 0.906 18 C -0.119 4.119 19 C -0.119 4.119 20 C -0.086 4.086 21 C -0.125 4.125 22 C -0.183 4.183 23 C -0.166 4.166 24 H 0.265 0.735 25 H 0.001 0.999 26 H 0.001 0.999 27 H 0.039 0.961 28 H 0.039 0.961 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.416 0.584 32 H 0.053 0.947 33 H 0.051 0.949 34 H 0.060 0.940 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.102 0.898 42 H 0.107 0.893 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.132 -28.017 0.688 28.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.786 3.214 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.194 1.194 7 C -0.588 4.588 8 H 0.069 0.931 9 C -0.010 4.010 10 C -0.121 4.121 11 C -0.170 4.170 12 C 0.302 3.698 13 O -0.468 6.468 14 N -0.370 5.370 15 C 0.006 3.994 16 C -0.081 4.081 17 H 0.113 0.887 18 C -0.157 4.157 19 C -0.156 4.156 20 C -0.124 4.124 21 C -0.125 4.125 22 C -0.220 4.220 23 C -0.203 4.203 24 H 0.074 0.926 25 H 0.020 0.980 26 H 0.020 0.980 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.127 0.873 30 H 0.127 0.873 31 H 0.253 0.747 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.102 0.898 41 H 0.120 0.880 42 H 0.125 0.875 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.825 -27.775 0.692 27.843 hybrid contribution 0.170 1.099 -0.064 1.114 sum 1.995 -26.675 0.628 26.757 Atomic orbital electron populations 1.70054 1.07489 1.27886 1.51506 1.25905 0.95837 1.03056 0.94653 0.85560 0.78406 0.78393 0.79057 1.19441 1.20271 1.19443 1.21676 0.93340 0.92887 1.50875 0.93117 1.19013 0.94174 0.92309 0.95553 1.21165 0.97645 0.93117 1.00182 1.21681 0.97898 0.91617 1.05790 1.21095 0.89363 0.84948 0.74415 1.90658 1.19188 1.85579 1.51344 1.45909 1.11269 1.04645 1.75153 1.21385 0.91868 0.85300 1.00817 1.21680 0.96344 0.90385 0.99735 0.88746 1.22582 1.00440 0.97048 0.95584 1.22321 0.97409 0.94479 1.01426 1.21652 0.96854 0.96263 0.97615 1.21738 0.92966 0.97481 1.00337 1.23082 0.93797 1.02117 1.03040 1.23017 1.03379 1.02317 0.91569 0.92617 0.98024 0.98014 0.94216 0.94231 0.87330 0.87281 0.74705 0.92905 0.93114 0.92153 0.90152 0.90824 0.90581 0.91507 0.90638 0.89796 0.87984 0.87466 0.89124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.80 13.29 21.45 0.28 -56.51 16 2 C 0.00 0.21 5.46 84.65 0.46 0.67 16 3 Si 0.96 45.55 29.54 68.60 2.03 47.58 16 4 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 6 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 7 C -0.55 -32.76 9.11 25.60 0.23 -32.53 16 8 H 0.05 2.99 7.74 -2.91 -0.02 2.96 16 9 C 0.03 1.43 4.97 29.85 0.15 1.57 16 10 C -0.08 -3.72 4.44 30.60 0.14 -3.58 16 11 C -0.13 -4.27 5.70 29.85 0.17 -4.10 16 12 C 0.51 16.63 7.83 87.66 0.69 17.31 16 13 O -0.59 -24.62 15.98 -3.01 -0.05 -24.67 16 14 N -0.72 -16.18 5.42 -463.06 -2.51 -18.69 16 15 C 0.13 2.77 3.86 86.38 0.33 3.11 16 16 C -0.06 -0.92 2.77 -9.82 -0.03 -0.95 16 17 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 18 C -0.12 -1.53 6.11 31.93 0.20 -1.33 16 19 C -0.12 -1.23 6.84 31.72 0.22 -1.01 16 20 C -0.09 -0.98 6.54 31.22 0.20 -0.77 16 21 C -0.12 -1.76 2.40 -52.02 -0.12 -1.88 16 22 C -0.18 -2.91 9.56 30.48 0.29 -2.61 16 23 C -0.17 -2.28 10.26 30.47 0.31 -1.97 16 24 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 25 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 26 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 27 H 0.04 1.86 8.10 -2.38 -0.02 1.84 16 28 H 0.04 1.86 8.10 -2.39 -0.02 1.84 16 29 H 0.11 3.12 8.14 -2.39 -0.02 3.10 16 30 H 0.11 3.13 8.14 -2.39 -0.02 3.11 16 31 H 0.42 6.56 8.39 -92.71 -0.78 5.79 16 32 H 0.05 1.30 7.93 -2.39 -0.02 1.29 16 33 H 0.05 1.23 7.37 -2.39 -0.02 1.22 16 34 H 0.06 0.93 7.99 -2.39 -0.02 0.91 16 35 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 36 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.08 1.61 6.44 -2.38 -0.02 1.60 16 41 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.11 1.18 8.14 -2.38 -0.02 1.16 16 43 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -71.93 347.63 3.18 -68.75 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: 0.19 Total: 11.62 kcal Atomic # 6 Polarization: -31.32 SS G_CDS: 3.24 Total: -28.08 kcal Atomic # 7 Polarization: -72.98 SS G_CDS: -2.23 Total: -75.20 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -0.05 Total: -24.67 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -71.93 3.18 -68.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600801052.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.976 kcal (2) G-P(sol) polarization free energy of solvation -71.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds