Wall clock time and date at job start Mon Mar 30 2020 08:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.51578 * 135.78490 * 2 1 4 4 C 1.53845 * 86.75501 * 154.84906 * 3 2 1 5 5 C 1.52998 * 113.65916 * 270.22223 * 4 3 2 6 6 C 1.50703 * 113.65585 * 139.27283 * 4 3 2 7 7 O 1.21279 * 119.99926 * 0.02562 * 6 4 3 8 8 N 1.34775 * 119.99773 * 179.97438 * 6 4 3 9 9 C 1.46496 * 119.99642 * 180.02562 * 8 6 4 10 10 C 1.53006 * 109.46995 * 180.02562 * 9 8 6 11 11 C 1.52999 * 109.46626 * 299.99666 * 10 9 8 12 12 C 1.52997 * 109.47164 * 59.99963 * 10 9 8 13 13 C 1.52997 * 109.47127 * 180.02562 * 10 9 8 14 14 C 1.50696 * 109.47055 * 179.97438 * 13 10 9 15 15 H 1.08000 * 120.00290 * 0.02562 * 14 13 10 16 16 C 1.37887 * 120.00079 * 179.97438 * 14 13 10 17 17 N 1.31516 * 119.99685 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00129 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47011 * 90.00204 * 18 16 14 20 20 H 1.48498 * 109.47112 * 210.00472 * 18 16 14 21 21 H 1.48499 * 109.47134 * 330.00583 * 18 16 14 22 22 C 1.51581 * 135.77909 * 180.02562 * 2 1 3 23 23 H 1.07999 * 120.00005 * 359.97438 * 1 2 3 24 24 H 1.08004 * 120.00281 * 179.97438 * 1 2 3 25 25 H 1.08998 * 113.65909 * 40.38753 * 3 2 1 26 26 H 1.08993 * 113.75538 * 269.32801 * 3 2 1 27 27 H 1.08995 * 109.47342 * 298.34015 * 5 4 3 28 28 H 1.09009 * 109.47101 * 58.33463 * 5 4 3 29 29 H 1.09004 * 109.47107 * 178.33497 * 5 4 3 30 30 H 0.96998 * 120.00166 * 0.02562 * 8 6 4 31 31 H 1.09001 * 109.47464 * 60.00642 * 9 8 6 32 32 H 1.09001 * 109.47459 * 300.00357 * 9 8 6 33 33 H 1.09000 * 109.47160 * 60.00369 * 11 10 9 34 34 H 1.09002 * 109.46719 * 180.02562 * 11 10 9 35 35 H 1.08993 * 109.47839 * 299.99931 * 11 10 9 36 36 H 1.09001 * 109.47375 * 59.99966 * 12 10 9 37 37 H 1.09002 * 109.46777 * 180.02562 * 12 10 9 38 38 H 1.09000 * 109.47140 * 299.99948 * 12 10 9 39 39 H 1.09001 * 109.47289 * 299.99953 * 13 10 9 40 40 H 1.09004 * 109.47261 * 59.99697 * 13 10 9 41 41 H 0.96999 * 119.99910 * 179.97438 * 17 16 14 42 42 H 1.08998 * 113.67179 * 90.68226 * 22 2 1 43 43 H 1.09006 * 113.66685 * 319.60794 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.3964 1.0570 0.0000 4 6 3.3036 -0.0002 0.6528 5 6 3.2462 0.0012 2.1817 6 6 4.7130 -0.0002 0.1193 7 8 5.0344 0.7881 -0.7445 8 7 5.6165 -0.8755 0.6028 9 6 6.9868 -0.8751 0.0846 10 6 7.8014 -1.9575 0.7959 11 6 7.8245 -1.6730 2.2990 12 6 7.1617 -3.3245 0.5453 13 6 9.2326 -1.9566 0.2551 14 6 10.0351 -3.0222 0.9562 15 1 9.5706 -3.6388 1.7116 16 6 11.3620 -3.2109 0.6325 17 7 11.9275 -2.4605 -0.2877 18 14 12.3566 -4.5323 1.5010 19 1 12.2488 -5.8078 0.7483 20 1 13.7804 -4.1160 1.5684 21 1 11.8310 -4.7235 2.8766 22 6 2.3963 -1.0572 -0.0005 23 1 -0.5400 0.9353 0.0004 24 1 -0.5401 -0.9353 -0.0004 25 1 2.1796 1.9071 0.6469 26 1 2.7192 1.3548 -0.9975 27 1 3.5890 0.9652 2.5573 28 1 2.2202 -0.1715 2.5070 29 1 3.8883 -0.7894 2.5701 30 1 5.3596 -1.5058 1.2939 31 1 7.4424 0.0989 0.2628 32 1 6.9703 -1.0781 -0.9862 33 1 6.8050 -1.6733 2.6846 34 1 8.4052 -2.4438 2.8057 35 1 8.2802 -0.6991 2.4776 36 1 7.1452 -3.5272 -0.5256 37 1 7.7418 -4.0955 1.0524 38 1 6.1422 -3.3248 0.9309 39 1 9.2165 -2.1590 -0.8158 40 1 9.6880 -0.9826 0.4340 41 1 12.8611 -2.5929 -0.5152 42 1 2.7182 -1.3534 -0.9988 43 1 2.1796 -1.9076 0.6461 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601579134.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:08:53 Heat of formation + Delta-G solvation = -20.179127 kcal Electronic energy + Delta-G solvation = -20481.030064 eV Core-core repulsion = 17526.595925 eV Total energy + Delta-G solvation = -2954.434139 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.65006 -38.27771 -36.83131 -33.66062 -32.23129 -31.45789 -27.95740 -27.16095 -26.52750 -26.41674 -26.00743 -23.59760 -22.15123 -19.65221 -18.20578 -17.86798 -16.79136 -16.33362 -15.69269 -15.39883 -14.80745 -14.55241 -14.47135 -14.17973 -13.70010 -13.43325 -13.15657 -12.79909 -12.61699 -12.32166 -12.17027 -12.08555 -11.96274 -11.55994 -11.18024 -11.08369 -11.01932 -10.86055 -10.64930 -10.43178 -10.39093 -10.26117 -9.88790 -9.66243 -9.32211 -9.12751 -8.92714 -8.70985 -8.36757 -6.00772 -4.02142 1.99574 2.78429 3.30135 3.37157 3.38614 3.47963 4.13881 4.29908 4.33797 4.44443 4.74230 4.95831 5.14324 5.34706 5.41894 5.47473 5.48601 5.53601 5.60780 5.61837 5.69588 5.74156 5.74702 5.93790 6.01795 6.15814 6.19143 6.21754 6.28713 6.38313 6.56907 6.61584 6.69696 6.76936 7.05018 7.06136 7.11851 7.63122 7.75446 7.77019 7.97944 8.39045 8.45229 9.02689 9.61003 11.10711 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.044924 B = 0.003632 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.122582 B = 7707.840946 C = 7888.545422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.144 4.144 3 C -0.082 4.082 4 C -0.106 4.106 5 C -0.126 4.126 6 C 0.523 3.477 7 O -0.545 6.545 8 N -0.718 5.718 9 C 0.127 3.873 10 C -0.073 4.073 11 C -0.127 4.127 12 C -0.127 4.127 13 C 0.036 3.964 14 C -0.511 4.511 15 H 0.059 0.941 16 C 0.056 3.944 17 N -0.895 5.895 18 Si 0.889 3.111 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.089 4.089 23 H 0.105 0.895 24 H 0.105 0.895 25 H 0.077 0.923 26 H 0.106 0.894 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.398 0.602 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.028 0.972 34 H 0.067 0.933 35 H 0.047 0.953 36 H 0.047 0.953 37 H 0.067 0.933 38 H 0.028 0.972 39 H 0.018 0.982 40 H 0.018 0.982 41 H 0.260 0.740 42 H 0.097 0.903 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.194 2.801 4.144 20.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.144 4.144 3 C -0.119 4.119 4 C -0.109 4.109 5 C -0.184 4.184 6 C 0.308 3.692 7 O -0.422 6.422 8 N -0.369 5.369 9 C 0.004 3.996 10 C -0.073 4.073 11 C -0.184 4.184 12 C -0.184 4.184 13 C -0.001 4.001 14 C -0.550 4.550 15 H 0.077 0.923 16 C -0.145 4.145 17 N -0.534 5.534 18 Si 0.717 3.283 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.126 4.126 23 H 0.123 0.877 24 H 0.123 0.877 25 H 0.095 0.905 26 H 0.124 0.876 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.234 0.766 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.047 0.953 34 H 0.086 0.914 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.086 0.914 38 H 0.047 0.953 39 H 0.036 0.964 40 H 0.036 0.964 41 H 0.070 0.930 42 H 0.115 0.885 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -19.748 3.393 3.438 20.331 hybrid contribution 0.635 -1.038 0.728 1.418 sum -19.113 2.356 4.166 19.704 Atomic orbital electron populations 1.22842 0.93350 1.02077 1.03003 1.22826 0.93830 0.98205 0.99564 1.22241 0.91955 0.95442 1.02253 1.21967 0.91827 1.00005 0.97148 1.21574 1.02710 1.02835 0.91233 1.20211 0.86311 0.80553 0.82113 1.90679 1.80110 1.39589 1.31864 1.46214 1.11801 1.37033 1.41818 1.21639 0.79741 0.99980 0.98250 1.20905 0.98384 0.92841 0.95183 1.21758 0.98815 1.02089 0.95732 1.21757 0.97637 0.97766 1.01236 1.19086 0.87339 0.97472 0.96227 1.21184 0.94997 1.17557 1.21217 0.92261 1.25019 0.98002 0.96214 0.95274 1.69966 1.12577 1.39345 1.31498 0.86647 0.79535 0.82110 0.80011 1.20775 1.21333 1.19941 1.22294 0.93020 0.95792 1.01488 0.87664 0.87714 0.90474 0.87554 0.91558 0.91374 0.91749 0.76648 0.91835 0.91876 0.95302 0.91420 0.93363 0.93372 0.91435 0.95279 0.96371 0.96352 0.93031 0.88520 0.90027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.41 14.71 29.01 0.43 -0.98 16 2 C -0.14 -1.37 6.60 -100.29 -0.66 -2.03 16 3 C -0.08 -0.89 6.98 -27.01 -0.19 -1.08 16 4 C -0.11 -1.18 1.27 -154.86 -0.20 -1.37 16 5 C -0.13 -1.14 8.98 37.16 0.33 -0.80 16 6 C 0.52 7.81 6.93 -10.98 -0.08 7.73 16 7 O -0.54 -10.30 15.90 5.56 0.09 -10.21 16 8 N -0.72 -10.41 4.84 -60.29 -0.29 -10.70 16 9 C 0.13 2.25 4.56 -4.04 -0.02 2.23 16 10 C -0.07 -1.37 0.54 -154.51 -0.08 -1.45 16 11 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 12 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 13 C 0.04 0.89 4.04 -27.89 -0.11 0.77 16 14 C -0.51 -13.51 7.65 -34.44 -0.26 -13.78 16 15 H 0.06 1.50 5.68 -52.49 -0.30 1.21 16 16 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 17 N -0.89 -26.41 13.29 55.43 0.74 -25.67 16 18 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 21 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 22 C -0.09 -0.87 7.18 -27.01 -0.19 -1.07 16 23 H 0.11 0.73 8.06 -52.49 -0.42 0.31 16 24 H 0.10 0.71 8.06 -52.48 -0.42 0.29 16 25 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 26 H 0.11 1.32 7.42 -51.93 -0.39 0.94 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.53 7.70 -51.92 -0.40 0.13 16 29 H 0.06 0.54 7.04 -51.93 -0.37 0.17 16 30 H 0.40 4.91 5.06 -40.82 -0.21 4.71 16 31 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.03 0.40 6.86 -51.93 -0.36 0.05 16 34 H 0.07 1.27 6.62 -51.93 -0.34 0.92 16 35 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 38 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 39 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 42 H 0.10 1.03 8.09 -51.93 -0.42 0.61 16 43 H 0.08 0.68 8.10 -51.93 -0.42 0.26 16 LS Contribution 341.46 15.07 5.15 5.15 Total: -1.00 -30.43 341.46 -7.13 -37.56 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -7.26 Total: 1.94 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: -0.53 Total: -14.18 kcal Atomic # 7 Polarization: -36.81 SS G_CDS: 0.44 Total: -36.37 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.09 Total: -10.21 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.43 -7.13 -37.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601579134.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.383 kcal (2) G-P(sol) polarization free energy of solvation -30.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds