Wall clock time and date at job start Mon Mar 30 2020 08:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.51578 * 135.78490 * 2 1 4 4 C 1.53845 * 86.75501 * 154.84906 * 3 2 1 5 5 C 1.52998 * 113.65916 * 270.22223 * 4 3 2 6 6 C 1.50703 * 113.65585 * 139.27283 * 4 3 2 7 7 O 1.21279 * 119.99926 * 0.02562 * 6 4 3 8 8 N 1.34775 * 119.99773 * 179.97438 * 6 4 3 9 9 C 1.46496 * 119.99642 * 180.02562 * 8 6 4 10 10 C 1.53006 * 109.46995 * 180.02562 * 9 8 6 11 11 C 1.52999 * 109.46626 * 299.99666 * 10 9 8 12 12 C 1.52997 * 109.47164 * 59.99963 * 10 9 8 13 13 C 1.52997 * 109.47127 * 180.02562 * 10 9 8 14 14 C 1.50696 * 109.47055 * 179.97438 * 13 10 9 15 15 H 1.08000 * 120.00290 * 0.02562 * 14 13 10 16 16 C 1.37887 * 120.00079 * 179.97438 * 14 13 10 17 17 N 1.31516 * 119.99685 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00129 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47011 * 90.00204 * 18 16 14 20 20 H 1.48498 * 109.47112 * 210.00472 * 18 16 14 21 21 H 1.48499 * 109.47134 * 330.00583 * 18 16 14 22 22 C 1.51581 * 135.77909 * 180.02562 * 2 1 3 23 23 H 1.07999 * 120.00005 * 359.97438 * 1 2 3 24 24 H 1.08004 * 120.00281 * 179.97438 * 1 2 3 25 25 H 1.08998 * 113.65909 * 40.38753 * 3 2 1 26 26 H 1.08993 * 113.75538 * 269.32801 * 3 2 1 27 27 H 1.08995 * 109.47342 * 298.34015 * 5 4 3 28 28 H 1.09009 * 109.47101 * 58.33463 * 5 4 3 29 29 H 1.09004 * 109.47107 * 178.33497 * 5 4 3 30 30 H 0.96998 * 120.00166 * 0.02562 * 8 6 4 31 31 H 1.09001 * 109.47464 * 60.00642 * 9 8 6 32 32 H 1.09001 * 109.47459 * 300.00357 * 9 8 6 33 33 H 1.09000 * 109.47160 * 60.00369 * 11 10 9 34 34 H 1.09002 * 109.46719 * 180.02562 * 11 10 9 35 35 H 1.08993 * 109.47839 * 299.99931 * 11 10 9 36 36 H 1.09001 * 109.47375 * 59.99966 * 12 10 9 37 37 H 1.09002 * 109.46777 * 180.02562 * 12 10 9 38 38 H 1.09000 * 109.47140 * 299.99948 * 12 10 9 39 39 H 1.09001 * 109.47289 * 299.99953 * 13 10 9 40 40 H 1.09004 * 109.47261 * 59.99697 * 13 10 9 41 41 H 0.96999 * 119.99910 * 179.97438 * 17 16 14 42 42 H 1.08998 * 113.67179 * 90.68226 * 22 2 1 43 43 H 1.09006 * 113.66685 * 319.60794 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.3964 1.0570 0.0000 4 6 3.3036 -0.0002 0.6528 5 6 3.2462 0.0012 2.1817 6 6 4.7130 -0.0002 0.1193 7 8 5.0344 0.7881 -0.7445 8 7 5.6165 -0.8755 0.6028 9 6 6.9868 -0.8751 0.0846 10 6 7.8014 -1.9575 0.7959 11 6 7.8245 -1.6730 2.2990 12 6 7.1617 -3.3245 0.5453 13 6 9.2326 -1.9566 0.2551 14 6 10.0351 -3.0222 0.9562 15 1 9.5706 -3.6388 1.7116 16 6 11.3620 -3.2109 0.6325 17 7 11.9275 -2.4605 -0.2877 18 14 12.3566 -4.5323 1.5010 19 1 12.2488 -5.8078 0.7483 20 1 13.7804 -4.1160 1.5684 21 1 11.8310 -4.7235 2.8766 22 6 2.3963 -1.0572 -0.0005 23 1 -0.5400 0.9353 0.0004 24 1 -0.5401 -0.9353 -0.0004 25 1 2.1796 1.9071 0.6469 26 1 2.7192 1.3548 -0.9975 27 1 3.5890 0.9652 2.5573 28 1 2.2202 -0.1715 2.5070 29 1 3.8883 -0.7894 2.5701 30 1 5.3596 -1.5058 1.2939 31 1 7.4424 0.0989 0.2628 32 1 6.9703 -1.0781 -0.9862 33 1 6.8050 -1.6733 2.6846 34 1 8.4052 -2.4438 2.8057 35 1 8.2802 -0.6991 2.4776 36 1 7.1452 -3.5272 -0.5256 37 1 7.7418 -4.0955 1.0524 38 1 6.1422 -3.3248 0.9309 39 1 9.2165 -2.1590 -0.8158 40 1 9.6880 -0.9826 0.4340 41 1 12.8611 -2.5929 -0.5152 42 1 2.7182 -1.3534 -0.9988 43 1 2.1796 -1.9076 0.6461 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601579134.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:08:52 Heat of formation + Delta-G solvation = -37.844083 kcal Electronic energy + Delta-G solvation = -20481.796074 eV Core-core repulsion = 17526.595925 eV Total energy + Delta-G solvation = -2955.200149 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.68834 -39.49074 -38.24817 -35.28157 -34.00058 -32.31666 -29.15266 -28.63260 -27.96476 -27.74239 -26.85979 -25.25449 -23.56803 -20.86382 -19.64256 -18.66899 -18.37874 -17.83980 -17.02027 -16.50590 -16.44486 -15.70821 -15.51536 -15.34702 -14.93241 -14.75543 -14.43907 -14.29066 -13.94382 -13.77544 -13.38411 -13.14353 -12.88928 -12.83592 -12.71879 -12.59809 -12.35728 -12.33908 -12.23100 -11.98848 -11.82483 -11.54241 -11.14784 -11.11369 -10.89071 -10.62794 -10.51616 -10.08059 -9.98292 -8.14149 -6.22153 1.32511 1.42789 1.43234 1.53639 1.60608 2.25693 2.45370 3.20382 3.35132 3.49017 3.58947 3.89720 3.97258 4.04709 4.07907 4.22025 4.45915 4.67670 4.69030 4.71408 4.76029 4.79977 4.81309 4.91441 4.95909 4.96708 5.02292 5.10529 5.12193 5.21522 5.29426 5.39622 5.46947 5.49828 5.53283 5.57147 5.58413 5.79834 5.89661 6.01862 6.29942 6.59224 6.93228 7.26016 7.45771 8.98508 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.044924 B = 0.003632 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.122582 B = 7707.840946 C = 7888.545422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.159 4.159 3 C -0.088 4.088 4 C -0.101 4.101 5 C -0.123 4.123 6 C 0.520 3.480 7 O -0.591 6.591 8 N -0.704 5.704 9 C 0.140 3.860 10 C -0.065 4.065 11 C -0.121 4.121 12 C -0.121 4.121 13 C 0.040 3.960 14 C -0.513 4.513 15 H 0.074 0.926 16 C -0.006 4.006 17 N -0.940 5.940 18 Si 0.959 3.041 19 H -0.276 1.276 20 H -0.290 1.290 21 H -0.258 1.258 22 C -0.084 4.084 23 H 0.116 0.884 24 H 0.122 0.878 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.062 0.938 28 H 0.087 0.913 29 H 0.075 0.925 30 H 0.413 0.587 31 H 0.044 0.956 32 H 0.043 0.957 33 H 0.070 0.930 34 H 0.056 0.944 35 H 0.036 0.964 36 H 0.036 0.964 37 H 0.057 0.943 38 H 0.070 0.930 39 H -0.016 1.016 40 H -0.015 1.015 41 H 0.259 0.741 42 H 0.082 0.918 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.871 1.192 6.511 23.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.160 4.160 3 C -0.126 4.126 4 C -0.105 4.105 5 C -0.180 4.180 6 C 0.307 3.693 7 O -0.472 6.472 8 N -0.356 5.356 9 C 0.016 3.984 10 C -0.065 4.065 11 C -0.178 4.178 12 C -0.178 4.178 13 C 0.002 3.998 14 C -0.551 4.551 15 H 0.092 0.908 16 C -0.203 4.203 17 N -0.581 5.581 18 Si 0.784 3.216 19 H -0.202 1.202 20 H -0.216 1.216 21 H -0.182 1.182 22 C -0.121 4.121 23 H 0.134 0.866 24 H 0.140 0.860 25 H 0.103 0.897 26 H 0.098 0.902 27 H 0.081 0.919 28 H 0.106 0.894 29 H 0.094 0.906 30 H 0.251 0.749 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.003 0.997 40 H 0.003 0.997 41 H 0.068 0.932 42 H 0.100 0.900 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -22.460 1.760 5.841 23.274 hybrid contribution 1.396 -0.463 -0.076 1.472 sum -21.065 1.297 5.765 21.878 Atomic orbital electron populations 1.23141 0.92761 1.03448 0.99905 1.22669 0.94086 0.96936 1.02260 1.22202 0.92984 0.96303 1.01091 1.22048 0.88656 1.01034 0.98713 1.21608 1.04258 1.03146 0.89033 1.21025 0.87740 0.79336 0.81176 1.90662 1.81174 1.41372 1.33973 1.45997 1.10239 1.37446 1.41966 1.21220 0.81535 0.98530 0.97164 1.20711 0.95057 0.94455 0.96296 1.21691 1.01180 1.00997 0.93970 1.21692 0.99645 0.95834 1.00678 1.18968 0.91061 0.95305 0.94418 1.21598 0.95191 1.17425 1.20894 0.90796 1.25970 0.99587 0.98626 0.96099 1.70128 1.12875 1.41562 1.33529 0.85529 0.77492 0.79057 0.79475 1.20152 1.21640 1.18205 1.22252 0.92504 0.96292 1.01045 0.86576 0.85986 0.89688 0.90153 0.91890 0.89410 0.90643 0.74880 0.93793 0.93844 0.91088 0.92464 0.94495 0.94516 0.92424 0.91110 0.99738 0.99707 0.93187 0.89963 0.87725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.95 14.71 67.78 1.00 -0.95 16 2 C -0.16 -2.64 6.60 -15.98 -0.11 -2.74 16 3 C -0.09 -1.84 6.98 30.41 0.21 -1.63 16 4 C -0.10 -2.07 1.27 -52.41 -0.07 -2.14 16 5 C -0.12 -1.81 8.98 71.98 0.65 -1.17 16 6 C 0.52 15.31 6.93 87.66 0.61 15.91 16 7 O -0.59 -23.13 15.90 -3.03 -0.05 -23.18 16 8 N -0.70 -19.56 4.84 -463.06 -2.24 -21.80 16 9 C 0.14 5.07 4.56 86.38 0.39 5.46 16 10 C -0.06 -2.44 0.54 -52.18 -0.03 -2.47 16 11 C -0.12 -4.01 8.05 71.98 0.58 -3.43 16 12 C -0.12 -4.01 8.05 71.98 0.58 -3.43 16 13 C 0.04 2.05 4.04 29.85 0.12 2.17 16 14 C -0.51 -27.42 7.65 25.60 0.20 -27.23 16 15 H 0.07 3.67 5.68 -2.91 -0.02 3.66 16 16 C -0.01 -0.34 5.46 84.66 0.46 0.12 16 17 N -0.94 -57.39 13.29 21.45 0.28 -57.10 16 18 Si 0.96 43.45 29.54 68.60 2.03 45.48 16 19 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 20 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 21 H -0.26 -10.92 7.11 99.48 0.71 -10.22 16 22 C -0.08 -1.44 7.18 30.42 0.22 -1.22 16 23 H 0.12 1.21 8.06 -2.91 -0.02 1.19 16 24 H 0.12 1.14 8.06 -2.91 -0.02 1.12 16 25 H 0.08 1.57 8.10 -2.39 -0.02 1.55 16 26 H 0.08 2.08 7.42 -2.39 -0.02 2.06 16 27 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.09 0.99 7.70 -2.38 -0.02 0.98 16 29 H 0.07 0.94 7.04 -2.38 -0.02 0.92 16 30 H 0.41 8.84 5.06 -92.71 -0.47 8.37 16 31 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.07 1.74 6.86 -2.39 -0.02 1.72 16 34 H 0.06 2.03 6.62 -2.39 -0.02 2.01 16 35 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.06 2.03 6.62 -2.39 -0.02 2.02 16 38 H 0.07 1.74 6.86 -2.39 -0.02 1.73 16 39 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 40 H -0.02 -0.88 8.14 -2.38 -0.02 -0.90 16 41 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 42 H 0.08 1.65 8.09 -2.39 -0.02 1.63 16 43 H 0.10 1.31 8.10 -2.38 -0.02 1.29 16 Total: -1.00 -69.24 341.46 5.34 -63.90 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: 0.51 Total: 15.46 kcal Atomic # 6 Polarization: -27.56 SS G_CDS: 4.81 Total: -22.75 kcal Atomic # 7 Polarization: -76.95 SS G_CDS: -1.96 Total: -78.91 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: -0.05 Total: -23.18 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -69.24 5.34 -63.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601579134.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.054 kcal (2) G-P(sol) polarization free energy of solvation -69.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds